BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482040
Length=1288
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31110.2 | Symbols: | Plant protein of unknown function (DU... 1997 0.0
AT5G19160.1 | Symbols: TBL11 | TRICHOME BIREFRINGENCE-LIKE 11 |... 65.8 1e-09
> AT2G31110.2 | Symbols: | Plant protein of unknown function (DUF828)
| chr2:13258329-13262099 REVERSE LENGTH=1316
Length=1316
Score = 1997 bits (1081), Expect = 0.0
Identities = 1225/1294 (95%), Gaps = 12/1294 (1%)
Strand=Plus/Plus
Query 2 TTTCTTAGTGACCCCAAAAACAAAATGGGACTCTGTTTCCAACTCAACTTAGCCTCTCTG 61
|||||| | |||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 5 TTTCTTGGCGACCTTAAATACAAAATGGGACTCTGTTTCCAACTCAACTTAGCCTCTCTG 64
Query 62 TCTCTCATACTCTTCTCTTCATTTCCTGAACTATTAGCACAATCTCAACAACATTTTTTG 121
||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||| |||
Sbjct 65 TCTCTCATACTCTTCTCTTCATTCCCTGGACTTTTAGCACAATCTCAACAACATTTCTTG 124
Query 122 GGACAAAACAACACAAGCTTGTTGAGTGGAGGAAGATGCAATTTGGCTAGAGGAAAATGG 181
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 125 GGACAAAACAACACAAGCTTGTTGAGTGGAGGGAGATGCAATTTGGCTAGAGGCAAATGG 184
Query 182 GTCTATGATTCTACATATCCTCTCTATAGTGCTTTTAATTGTCCCTTCATCGACTCCGAA 241
|||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 185 GTCTATGATTCTTCATATCCTCTCTATAGTGCTTTTAGTTGTCCCTTCATCGATTCCGAA 244
Query 242 TTCAACTGCCAGAAAGCGGGTCGACCCGACACTAACTATCAACACTTCCGATGGCAACCT 301
||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| |||
Sbjct 245 TTCAACTGCCAGAAAGCGGGTCGTCCGGACACTAACTATCAACACTTCCGTTGGCAGCCT 304
Query 302 TTCTCCTGTCCTCTCCCCAGATTCGATGGGGTGAATTTTATGAGGAGAATGAGAGGGAAG 361
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 305 TTCTCCTGTCCTCTCCCTAGATTCGATGGGGCGAATTTTATGAGGAGAATGAGAGGGAAG 364
Query 362 AAGATAATGATGGTAGGTGACTCACTGAGTCTTAACATGTTCGAATCGTTGGCCTGCTTG 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 AAGATAATGATGGTAGGTGACTCACTGAGTCTTAACATGTTCGAATCGTTGGCCTGCTTG 424
Query 422 CTTCATGCTTCTCTCCCTAATGCTAAGTACTCTCTTCGTCGAAGCCAACCTCTCACTTCC 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 CTTCATGCTTCTCTCCCTAATGCTAAGTACTCTCTTCGTCGAAGCCAACCTCTCACTTCC 484
Query 482 CTCACTTTCCAGGATTATGGAGTGACGATACATTTGTATAGAACACAGTTTCTAGTAGAC 541
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 485 CTCACTTTCCAGGATTATGGAGTGACGATAAATTTGTATAGAACACAGTTTCTAGTAGAT 544
Query 542 GTGGTTCAAGAAAAGGCAGGAAGAGTGCTTATGCTTGACTCCATCAAACAAGCCGATGCT 601
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 545 GTGGTTCAAGAAAAGGCAGGACGAGTGCTTGTGCTTGACTCCATCAAACAAGCCGATGCT 604
Query 602 TGGCTTGGCATGGACGTTCTAATCTTCAACTCGTGGCACTGGTGGACTCACACCTCCGGA 661
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 605 TGGCTTGGCATGGATGTTCTTATCTTCAACTCGTGGCACTGGTGGACTCACACCTCCGGA 664
Query 662 CTCCAGCCGTGGGATTATATGAGGGAAGGAAACCAATTGTACAAAGACATGAACAGGCTT 721
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 CTTCAGCCCTGGGATTATATGAGGGAAGGAAACCAATTGTACAAAGACATGAACAGGCTT 724
Query 722 GTGGCTTATTACAAAGGACTTAACACATGGGCTCGTTGGATTAACAATAACATTGTCCCT 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 GTGGCTTATTACAAAGGACTTAACACATGGGCTCGTTGGATTAACAATAACATTGTCCCT 784
Query 782 TCACGCACTCAAGTCTTCTTTCAAGGTGTTTCTCCTGTCCACTATGATGGAAGAGAGTGG 841
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 785 TCACGTACTCAAGTCTTCTTTCAAGGTGTTTCTCCTGTCCACTATGACGGAAGAGAGTGG 844
Query 842 AACGAACCATTGAAGTCGTGCAATGGTCAAACTCAGCCGTTCATGGGACAAAGATATCCC 901
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 AACGAACCATTGAAGTCGTGCAATGGTCAAACTCAGCCGTTCATGGGACAAAGATATCCA 904
Query 902 GGAGGATTGCCCTTAGGTTGGGTTGTGGTTAACAAAGTGTTGAGCCGAATCAAGAAA-CC 960
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||
Sbjct 905 GGAGGATTGCCCTTAGGTTGGGTTGTGGTTAACAAAGTGTTGAGCCGAATTA-GAAAACC 963
Query 961 GGTCCGTCTTCTCGATCTCACTACTCTCTCGGAGTATCGCAAAGACGCACATCCAAGTCT 1020
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 GGTCCATCTTCTCGATCTCACTACTCTCTCGGAGTATCGCAAAGACGCACATCCAAGTCT 1023
Query 1021 CTATAATGGTCTCTCAAAGGGTCTAGACTGCAGCCATTGGTGTCTCCCTGGACTCCCTGA 1080
||| |||||| ||||||||| ||||||||| ||||||||||| |||||||||||||||||
Sbjct 1024 CTACAATGGTATCTCAAAGGATCTAGACTGTAGCCATTGGTGCCTCCCTGGACTCCCTGA 1083
Query 1081 TACTTGGAACTCACTTCTCTACGCATCACTCACTTCCTAGTTCTCGTTTTACACATATAA 1140
||||||||||| |||||||||| |||| || |||||||||| || |||||||| || |
Sbjct 1084 TACTTGGAACTTACTTCTCTACTCATCTCTTACTTCCTAGTCCTTGTTTTACATATTTGT 1143
Query 1141 TTCTTTTCTACTATTTTATAAATAGTTCGTGA-GATTCCTGTGTGATTGTGATTGATATT 1199
|| ||| |||| ||||||||||||||| |||| ||| |||||||||||||||||||||||
Sbjct 1144 TTGTTT-CTACCATTTTATAAATAGTTTGTGATGAT-CCTGTGTGATTGTGATTGATATT 1201
Query 1200 CGTCCGTT-GTTAATTTAATCTTAAAATGTAATTAACATTATTACTAGTTTACATGCA-- 1256
||| || ||||||||||||||||| ||||||||||||| |||||||||||| ||||
Sbjct 1202 TTTCC-TTCGTTAATTTAATCTTAAA-TGTAATTAACATTGTTACTAGTTTACTTGCAGC 1259
Query 1257 A-C-ATCAGCTTAAATTCTCCATAAATTTTTTAT 1288
| | |||||||||||||||||||| |||| ||||
Sbjct 1260 ATCGATCAGCTTAAATTCTCCATACATTTGTTAT 1293
> AT5G19160.1 | Symbols: TBL11 | TRICHOME BIREFRINGENCE-LIKE 11
| chr5:6430486-6432728 FORWARD LENGTH=1906
Length=1906
Score = 65.8 bits (35), Expect = 1e-09
Identities = 54/63 (86%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 1045 AGACTGCAGCCATTGGTGTCTCCCTGGACTCCCTGATACTTGGAACTCA-CTTCTCTACG 1103
|||||||||||||||||||||||||||| | |||||| | ||||| | | ||||| || |
Sbjct 1505 AGACTGCAGCCATTGGTGTCTCCCTGGAGTTCCTGATTCGTGGAA-TGAGCTTCTTTATG 1563
Query 1104 CAT 1106
|||
Sbjct 1564 CAT 1566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63353087790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5