BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482041
Length=1585
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31130.1 | Symbols: | unknown protein; Has 116 Blast hits t... 2091 0.0
> AT2G31130.1 | Symbols: | unknown protein; Has 116 Blast hits
to 113 proteins in 44 species: Archae - 0; Bacteria - 3; Metazoa
- 21; Fungi - 2; Plants - 40; Viruses - 0; Other Eukaryotes
- 50 (source: NCBI BLink). | chr2:13263579-13266560 REVERSE
LENGTH=1647
Length=1647
Score = 2091 bits (1132), Expect = 0.0
Identities = 1474/1629 (90%), Gaps = 63/1629 (4%)
Strand=Plus/Plus
Query 1 TTGCTTCATCGTAATAACTTACTCTCTTTCACGAAAACTCTCTCTCCATCGAGTGAGAAA 60
||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 20 TTGCTTCATCGTAATAACTTACTCTCTTTCACGAAAA--CTCTCTCAATCGAGTGAGAAA 77
Query 61 TCAGAATTCGTACGTTGCTTTGAGAACAAACTCAAGAACGTT-GTTGGATTTGGAGAAAC 119
|||||||||||||||||||||||| || || ||||||| || || |||| |||| |
Sbjct 78 TCAGAATTCGTACGTTGCTTTGAGGACGCACACAAGAAC-TTAATTCGATTCAGAGAGAT 136
Query 120 AATGGATTTTAAAGGTATAAAATGGGTTGGGAATGTGTATCAGAAGTTTGAAGCAATGTG 179
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 137 AATGGATTTTAAAGGTATAAAATGGGTTGGGAATGTTTATCAGAAGTTTGAAGCAATGTG 196
Query 180 TTTAGAGGTTGAAGAAATTATTGTGCAGGACACAGCAAAATATGTTGAGAATCAAGTTCA 239
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 197 CTTAGAGGTTGAAGAAATTATCGTGCAGGACACAGCAAAATATGTTGAGAATCAAGTTCA 256
Query 240 GACTGTTGGTAACAGTGTCAAGAAATTCTGTTCAGATGTGGTTCAAGACTTGCTTCCTGA 299
||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 257 GACGGTTGGTAACAGTGTCAAGAAATTCTGTTCAGATGTGGTTCACGACTTGCTGCCTGA 316
Query 300 TGACTCTGTAGATTCGGAAAAACCTTTGCCCGTTTCTATGTTACATGAATACGCTCCTGT 359
||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 317 TGAATCTGTAGATTCGGGAAAACCTTTGCCCGTTTCTATGTTACATGAATACGCCCCTGT 376
Query 360 TTGTTCCTTCAAAAAGAAAAGAGATAGTATGAACCAAAAAACTAGAGATGTGAAACAAGA 419
|| ||| |||||||| |||| |||||||||||||| ||||||| |||||||| ||||||
Sbjct 377 TTATTCTTTCAAAAAAAAAAAAGATAGTATGAACCGGAAAACTAAAGATGTGACACAAGA 436
Query 420 ACAAGAGGTAACTGAAGGGAAGAAGGATGGATGTGCAAAGAAATTCCGTGGTCTTGATGC 479
|||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 437 GCAAGAGGTAACTGAGGGGAAGAAGGATGGATTTGCAAAGAAATTACGTGGTCTTGATGC 496
Query 480 AGATGATTACGATATCTGTACGTCTCCAAGGCAGTATAGTTATGGAGGTCCATATAGAAG 539
||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 497 AGATGATTATGATATCTGTACTTCTCCAAGGCAGTATAGTTATGGAGGTCCATACAGAAG 556
Query 540 AACAAGAGTTGGCCGCAAACAGATATTTAAAAAGGAGGAGCTTTCCCAAGTCACCAGGCC 599
||||||| | ||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 557 AACAAGAATCGGCCGCAAACAGATATTTAAAAAAGAGGAGCTTTCCCAAGTCATCAGGCC 616
Query 600 GTATATCCAGAAAGACTCGAGTAGTTTATCAATGGTTCATAGTGCTCGTGTCAAAGATGA 659
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 617 TTATATCCAGAAAGACTTGACTAGTTTATCAATGGTTCATAGTGCTCGTGTCAAAGATGA 676
Query 660 TGTCGGAACTGTAAACTCAAGTAGTTTATCTATGGTTCATAGTGCTCGTATCAAAGATGA 719
| | |||||||||||||| ||||||||||| |||||||||||||||||| |||| |||||
Sbjct 677 TCTTGGAACTGTAAACTCTAGTAGTTTATCAATGGTTCATAGTGCTCGTGTCAATGATGA 736
Query 720 TGTTGGAACTGTAAACTCAAGTAGTTTATCAATGGTTCAT-AGTGCTCGTATCAAAGATG 778
|||||||||||||||||||||||||||||||||||||||| | |||| |||| |||||||
Sbjct 737 TGTTGGAACTGTAAACTCAAGTAGTTTATCAATGGTTCATCA-TGCTAGTATGAAAGATG 795
Query 779 ATGTTGGAACTGTAAAGTCAAGTGATTCTCCTCCAGGTGAAGTAGAAAAACTCATCTCTA 838
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 796 ATGTCGGAACTGTAAAGTCAAGTGATTCTCCTCCAGGTGAAGTAGAAAAACTCATCTCCA 855
Query 839 AAAAGGAATGTCAGAAAGATGATAGAA-CCAAAAATCAACAGAGTCTGACAGTGGTTAAT 897
||||| ||||||||||||| |||| || ||||||||||||||||||||||||||||||||
Sbjct 856 AAAAGAAATGTCAGAAAGACGATA-AAGCCAAAAATCAACAGAGTCTGACAGTGGTTAAT 914
Query 898 TCTGTTAAAAGCAATGTTTCAGAGATTAGAATCGACAATGAACATGGTCTTATGGGG-GA 956
||||||||||| |||| ||||||| ||| | |||| |||||||| |||||| | || ||
Sbjct 915 TCTGTTAAAAGTAATGATTCAGAGGTTATAGTCGATAATGAACACGGTCTT-TCGGCAGA 973
Query 957 TA-GT-----AG---TCAAGATTCGGAGATTCAACCATCTGTTGCCACTAGCTTAGCTGC 1007
|| || || |||||||| |||||||||||||||| | |||||||||||| ||||
Sbjct 974 TAAGTCTGTTAGAAGTCAAGATTTGGAGATTCAACCATCTCTGGCCACTAGCTTACCTGC 1033
Query 1008 AGGATCTGATGATTGCAGAAAGGAAACCAACGTGGATACAAAAACAAGTTCGAGTTCTGT 1067
|| ||||||||||||||||||||||||||| ||||| | | ||||||||||||||||
Sbjct 1034 AGAATCTGATGATTGCAGAAAGGAAACCAATGTGGA-A-A----CAAGTTCGAGTTCTGT 1087
Query 1068 CTCAGAGCAGAAGTCAGAGATTCTCCAACATCTTAGTGGAAGATCAGTCGAAGAAAGCTG 1127
|||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1088 CTCAGAGCCGAAGTCAGAGATTCTCCAACATCTTAGTGGGAGATCAGTTGAAGAAAGCTG 1147
Query 1128 TATACTCGTGGATAGAGACGAATTTCATTGTGTATTTCCTGACAAGATGGAGAATGACAA 1187
|||||| ||||||||||||||||| ||| |||| ||||||||||||||||||||||||||
Sbjct 1148 TATACTTGTGGATAGAGACGAATTCCATAGTGTGTTTCCTGACAAGATGGAGAATGACAA 1207
Query 1188 ACACAAACCTTACAAGAAGATCCGAGACGCTATATCTTCAAGAATGAAGCAAAACAGAGA 1247
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1208 ACACAAACCTTACAAGAAGATCAGAGACGCTATATCTTCAAGAATGAAGCAAAACAGAGA 1267
Query 1248 AAAAGAATACAAGCGACTTGCGCGTCAATGGTACGCAGAAGATGTTGAAAATGGAAGAGA 1307
||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 1268 AAAAGAATACAAGCGACTTGCCCGGCAATGGTACGCAGAAGATGTTGAAAATGGGAGAGA 1327
Query 1308 ATGTGGCGATGATCCGAAACC-ATTAGAGGAAAACCAATCATCAGAAGAATCTGAATGGG 1366
|||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1328 ATGTGGCGATAATCCGAAACCGAT-AGAGGAAAACCAATCATCAGAAGAATCTGAATGGG 1386
Query 1367 AGCTTCTGTAAAATGTTAAATGGTAAA-------T----CTCTC-T-T-T------GTAC 1406
||||||||||||||||||||||||||| | ||||| | | | ||||
Sbjct 1387 AGCTTCTGTAAAATGTTAAATGGTAAACAGAGAATATAGCTCTCCTCTCTCTCTTTGTAC 1446
Query 1407 ATAAAGAATGTATTAAGCAAAACATCCGATAAGAAGCAGCT--GAA---AA--GGCTTC- 1458
||||||||||||||||||||||||| |||||||||||||| ||| || ||||||
Sbjct 1447 ATAAAGAATGTATTAAGCAAAACATAAGATAAGAAGCAGCTAAGAAGTCAAAAGGCTTCT 1506
Query 1459 -C-TCTGCTTACATAATAAATAAGGCTCTTATATTTATCAAATTTTTGTCTAACtttttt 1516
| |||| |||||||||||||||||| ||||| ||||||||||||| || |||||| |||
Sbjct 1507 TCCTCTGGTTACATAATAAATAAGGCCCTTATCTTTATCAAATTTTCGTTTAACTTATTT 1566
Query 1517 ttttttttAATTTCAAGTGAAAATGTTTTTTATAAATTGTTTGCATATGTGAATATTTTT 1576
|| | ||||||||||||| ||||||| ||||||||||||||| |||||||||||||
Sbjct 1567 TTAT----AATTTCAAGTGAAGATGTTTT--ATAAATTGTTTGCATTTGTGAATATTTTT 1620
Query 1577 GTGGGAGAA 1585
|||||||||
Sbjct 1621 GTGGGAGAA 1629
Score = 185 bits (100), Expect = 9e-46
Identities = 114/121 (94%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 681 TAGTTTATCTATGGTTCATAGTGCTCGTATCAAAGATGATGTTGGAACTGTAAACTCAAG 740
||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||| ||
Sbjct 638 TAGTTTATCAATGGTTCATAGTGCTCGTGTCAAAGATGATCTTGGAACTGTAAACTCTAG 697
Query 741 TAGTTTATCAATGGTTCATAGTGCTCGTATCAAAGATGATGTTGGAACTGTAAAGTCAAG 800
|||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||
Sbjct 698 TAGTTTATCAATGGTTCATAGTGCTCGTGTCAATGATGATGTTGGAACTGTAAACTCAAG 757
Query 801 T 801
|
Sbjct 758 T 758
Score = 182 bits (98), Expect = 1e-44
Identities = 119/129 (92%), Gaps = 2/129 (2%)
Strand=Plus/Plus
Query 614 ACTCGAGTAGTTTATCAATGGTTCATAGTGCTCGTGTCAAAGATGATGTCGGAACTGTAA 673
|||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 691 ACTCTAGTAGTTTATCAATGGTTCATAGTGCTCGTGTCAATGATGATGTTGGAACTGTAA 750
Query 674 ACTCAAGTAGTTTATCTATGGTTCAT-AGTGCTCGTATCAAAGATGATGTTGGAACTGTA 732
|||||||||||||||| ||||||||| | |||| |||| ||||||||||| |||||||||
Sbjct 751 ACTCAAGTAGTTTATCAATGGTTCATCA-TGCTAGTATGAAAGATGATGTCGGAACTGTA 809
Query 733 AACTCAAGT 741
|| ||||||
Sbjct 810 AAGTCAAGT 818
Score = 91.6 bits (49), Expect = 2e-17
Identities = 57/61 (93%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 741 TAGTTTATCAATGGTTCATAGTGCTCGTATCAAAGATGATGTTGGAACTGTAAAGTCAAG 800
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||| || ||
Sbjct 638 TAGTTTATCAATGGTTCATAGTGCTCGTGTCAAAGATGATCTTGGAACTGTAAACTCTAG 697
Query 801 T 801
|
Sbjct 698 T 698
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78262649655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5