BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482042
Length=857
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31140.1 | Symbols: | Peptidase S24/S26A/S26B/S26C family p... 1088 0.0
AT1G06200.1 | Symbols: | Peptidase S24/S26A/S26B/S26C family p... 470 1e-131
> AT2G31140.1 | Symbols: | Peptidase S24/S26A/S26B/S26C family
protein | chr2:13269926-13271811 FORWARD LENGTH=972
Length=972
Score = 1088 bits (589), Expect = 0.0
Identities = 701/751 (93%), Gaps = 23/751 (3%)
Strand=Plus/Plus
Query 98 ATTTGAAGGGTTTCGGCCATGGCTTCAATCTCGACTTGGTTCCGATACATGGCTCACAAG 157
|||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 145 ATTTTAAGGGTTTTGGTCATGGCTTCAATCTCGACTTGGTTCCGATACATGGCTCACAAG 204
Query 158 CTCGAGTATTCCCTCACTCTCAGTCTCAAGAGTCATAGGAGTAAGAAACTGAGTGACCGG 217
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 205 CTCGAGTATTCCCTCACTCTCAGTCTCAAGAGTCATAGGAGTAATAAACTGAGTGACCGG 264
Query 218 GAACTTATTCAAATAATTTGCAAGAATCTATTCTATGGGAAAATAACCTACTTACACTCA 277
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 265 GAACTTATTCAAATAATCTGCAAGAATCTGTTCTATGGGAAAATAACCTACTTACACTCG 324
Query 278 GATAAAGGACCAGAAATGTCACCAACCATGACAGCAAATGAAAACACACTTCTTATCCGT 337
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 325 GATAAAGGACCAGAAATGTCACCAACCATGACAGCAAATGAAAACACACTTCTTATTCGT 384
Query 338 AAGATACCAATTGCTAATACCAGGTTTGTATTCATTGGAGATGCCGTCGTCTTAAAGGAC 397
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 385 AAGATACCAATTGCTAATACCAGGTTTGTATTCATTGGAGATGCTGTCGTCTTAAAGGAT 444
Query 398 CCAAATGATTCAGATAAGTATCTGGTAAGAAGATTAGCAGCTGTAGAAGGATTTGAAATG 457
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 445 CCAAACGATTCAGATAAGTATCTGGTAAGAAGATTAGCAGCTGTAGAAGGATTCGAAATG 504
Query 458 GTATCGGGTGATGAAAAAGAGGAGCCTTTTGTTCTCGAAAAGGATCAGTGTTGGGTAACA 517
||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||
Sbjct 505 GTATCGGGTGATGAAAAAGAGGAGCCTTTTGTTCTTGAGAAGAATCAGTGTTGGGTAACA 564
Query 518 GCTGAAAACCAGGAGCTCAAAGCTAAGGAAGCATATGATAGTAGAACATTTGGTCCAGTT 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 GCTGAAAACCAGGAGCTCAAAGCTAAGGAAGCATATGATAGTAGAACATTTGGTCCAGTT 624
Query 578 TCAACAGCAGATATTGTTGGAAGAGCTATATATTGTCTGAGAACAGCCGTCGATCACGGT 637
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 625 TCAACAGCAGACATTGTTGGAAGAGCTATATACTGTCTGAGAACAGCCGTCGATCACGGA 684
Query 638 CCTGTTCGAAACAGTCACACTGCAATGGGACAAGATTCTCCAATCCTGGCCGTAGAATTG 697
|||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 685 CCTGTTCGAAACAGCCAAACTGCAATGGGACAAGATTCTCCAATCCTGGCCGTGGAATTG 744
Query 698 GACGTGGACGAGATGGCTAAAAACCACAAGGCATAAAGAGACGCACTTTC---------- 747
|||||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 745 GACGTGGACGAGATGGCTAAGAACCATAAGGCATAGAGAGACGCACTTTCTTGTGTTTGT 804
Query 748 --A--A-----A--GCTGAAATTGCCTTCTTTGATTGAGATTTGAGTAAACAATAAAATC 796
| | | ||| |||||||||||||||||||||||||||| |||||||||| ||
Sbjct 805 TTATTATTGTCAAAGCTAAAATTGCCTTCTTTGATTGAGATTTGAGAAAACAATAAA-TC 863
Query 797 ATTACAACAATGATACTAAAAATCCTAAATT 827
||||||||||||| ||||||| |||||||||
Sbjct 864 ATTACAACAATGAAACTAAAA-TCCTAAATT 893
Score = 82.4 bits (44), Expect = 7e-15
Identities = 59/65 (91%), Gaps = 5/65 (8%)
Strand=Plus/Plus
Query 1 ATCAAAAACCAAACCAAACCCATAGGGTTGT-T-G---CTGTTCTGTTCCAATCGACCAC 55
||||||||||||||||||||||||||||||| | | |||||||||||| |||||||||
Sbjct 1 ATCAAAAACCAAACCAAACCCATAGGGTTGTGTTGTTGCTGTTCTGTTCCTATCGACCAC 60
Query 56 GGCGG 60
|||||
Sbjct 61 GGCGG 65
> AT1G06200.1 | Symbols: | Peptidase S24/S26A/S26B/S26C family
protein | chr1:1894336-1896935 REVERSE LENGTH=972
Length=972
Score = 470 bits (254), Expect = 1e-131
Identities = 503/623 (81%), Gaps = 18/623 (3%)
Strand=Plus/Plus
Query 116 ATGGCTTCAATCTCGACTTGGT-TCCGATACATGGCTCACAAGCTCGAGTATTCCCTCAC 174
|||||||| ||| ||| || | |||||||||||||||||||||||||||| || |||||
Sbjct 84 ATGGCTTCCATCACGAATT-ATGTCCGATACATGGCTCACAAGCTCGAGTACTCTCTCAC 142
Query 175 TCTCAGTCTCAAGAGTCATAGGAGTA-AGAAACTGAGTGACCGGGAACT-TATTCAAATA 232
|||||| || |||| |||| || | |||| || |||||||||||||| | || ||
Sbjct 143 TCTCAGCCTTAAGAAACATACTAG-AGAGAAGCTCAGTGACCGGGAACTCT-TTGGTGTA 200
Query 233 AT-TTGCAAGAATCTATTCTATGGGAA-AATAACCTACTTACACTCAGATAAAGGACCAG 290
| || ||||||||||||||| |||| ||||| |||||||||||| || |||||| ||
Sbjct 201 GTCATG-AAGAATCTATTCTAT-GGAAGAATAAGCTACTTACACTCGGACAAAGGAAAAG 258
Query 291 AAATGTCACCAACCATGACAGCAAATGAAAACACACTTCTTATCCGTAAGATACCAATTG 350
| ||| | ||||||||| | ||||||||| ||| || ||| |||||||| ||||| |||
Sbjct 259 AGATGGCCCCAACCATGGGAACAAATGAAAGCACGCTACTTGTCCGTAAGCTACCAGTTG 318
Query 351 CTAATACCAGGTTTGTATTCATTGGAGATGCCGTCGTCTTAAAGGACCCAAATGATTCAG 410
| |||| |||| | ||| | || ||||| || ||||| |||||||| ||||| ||
Sbjct 319 TTGATACAAGGTACATTTTCGTAGGGGATGCTGTTGTCTTGAAGGACCCGAATGAAACAA 378
Query 411 ATAAGTATCTGGTAAGAAGATTAGCAGCTGTAGAAGGATTTGAAATGGTATCGGGTGATG 470
|||||||| | || |||||| |||||||| |||| |||| |||||||||||| ||||||
Sbjct 379 ATAAGTATATAGTCAGAAGACTAGCAGCTTTAGAGGGATCTGAAATGGTATCAAGTGATG 438
Query 471 AAAAAGAGGAGCCTTTTGTTCTCGAAAAGGATCAGTGTTGGGTAACAGCTGAAAACCAGG 530
| ||||| ||||||||||||||||||||||||||||| ||||| ||||| || || |
Sbjct 439 AGAAAGATGAGCCTTTTGTTCTCGAAAAGGATCAGTGCTGGGTCGTTGCTGAGAATCAAG 498
Query 531 AGCTCAAAGCTAAGGAAGCATATGATAGTAGAACATTTGGTCCAGTTTCAACAGCAGATA 590
|| | ||| |||| ||||||||||||||| |||||||||||||| |||||| || || |
Sbjct 499 AGATGAAATCTAAAGAAGCATATGATAGTCGAACATTTGGTCCAATTTCAATGGCGGACA 558
Query 591 TTGTTGGAAGAGCTATATATTGTCTGAGAACAGCCGTCGATCACGGTCCTGTTCGAAACA 650
| || ||||||||||||||||||||||| ||||| || ||||| ||||| || | ||||
Sbjct 559 TAGTGGGAAGAGCTATATATTGTCTGAGGACAGCAGTGGATCATGGTCCAGTAAGCAACA 618
Query 651 GTCACACT-GCAATGGGACAAG-ATTCTCCAATCCTGGCCGTAGAA-TTGGACGTGGACG 707
|| | | | || |||| || || |||| ||||||||||| |||||| ||| ||||||| |
Sbjct 619 GTGA-ATTTGCCATGG-ACGAGGATTCCCCAATCCTGGCGGTAGAACTTG-ACGTGGATG 675
Query 708 AGAT-GGCTAAAAACCACAAGGC 729
| || ||||||| |||||||||
Sbjct 676 A-ATTGGCTAAAGGCCACAAGGC 697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41794810304
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5