BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482044
Length=1841
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31170.1 | Symbols: SYCO ARATH | Cysteinyl-tRNA synthetase, ... 2747 0.0
> AT2G31170.1 | Symbols: SYCO ARATH | Cysteinyl-tRNA synthetase,
class Ia family protein | chr2:13282355-13285645 REVERSE LENGTH=1925
Length=1925
Score = 2747 bits (1487), Expect = 0.0
Identities = 1645/1721 (96%), Gaps = 12/1721 (1%)
Strand=Plus/Plus
Query 1 AGCTTATCGTTCCACAGCAATGGCTTCTTCTGTTCTCAATCTCTTCAAATCATGTAGACC 60
|||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||
Sbjct 11 AGCTTATCGTTCCACACCAATGGCTTCTTCTGTCCTTAATCTCTTCAAATCATGTAGACC 70
Query 61 CTTTACTCCAATACGCTTCTCTTCTCTTCCCAAGTCTCAATTCAGAATCCAATTTCCCCT 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 71 CTTCACTCCAATACGCTTCTCTTCTCTTCCCAAGTCTCAATTCAGAATCCAATTTCCCCT 130
Query 121 CAGACCCGGAAAAGAAACTCAACCCCGTCGCTGTTTCACGACTCTATCATCATTAACGGA 180
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 131 CAGACCCGGAAAAGAAACTCAACTACGTCGCTGTTTCACGACTCTGTCATCATTAACGGA 190
Query 181 CGGTGGAGCACCAATTTCCGGCGAGAAGGAGCTATGGCTGAACAACACGATGAGCCGGAA 240
||||||||||||||||||||| | ||||||||| |||||| |||||||||||||||||||
Sbjct 191 CGGTGGAGCACCAATTTCCGGTGGGAAGGAGCTGTGGCTGCACAACACGATGAGCCGGAA 250
Query 241 GAAGGAGCTGTTTAAGCCTAAGATCGAAGGTAAAGTTGGAATGTACGTTTGCGGTGTCAC 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 251 GAAGGAGCTGTTTAAGCCTAAGGTCGAAGGTAAAGTTGGAATGTACGTTTGCGGTGTCAC 310
Query 301 TGCTTACGATCTCAGTCACATTGGACACGCACGAGTCTACGTCACTTTCGATGTTCTCTT 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 311 TGCTTACGATCTCAGTCACATTGGACACGCACGAGTCTACGTCACTTTCGATGTACTCTT 370
Query 361 GAGGTACCTTAAGCATCTAGGATATGAAGTGTCGTATGTTCGAAATTTCACGGATGTGGA 420
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 371 GAGGTACCTTAAGCATCTAGGATATGAAGTGTCTTACGTTCGAAATTTCACGGATGTGGA 430
Query 421 TGATAAGATAATTGCCCGAGCGAATGAATTAGGAG-AAGATCCAATCAGTTTGAGCAGAC 479
||| ||||| |||||| ||||||| ||||||| || ||||||||||||||||||||||||
Sbjct 431 TGACAAGATTATTGCCAGAGCGAAAGAATTAG-AGGAAGATCCAATCAGTTTGAGCAGAC 489
Query 480 GATTCTGTGAGGAATTTAATCGAGATATGGAACAGCTTCAATGTTTAGATCCTTCTGTCC 539
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 490 GTTTCTGTGAGGAATTTAATCGAGATATGGAACAGCTTCAATGTTTAGATCCGTCTGTCC 549
Query 540 AACCACGCGTCTCAGATCATATACCTCAAATCATTGACCTGATCAAGCAGATTCTTGATA 599
||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 550 AACCACGAGTTTCAGATCATATACCTCAAATCATCGACCTGATCAAGCAGATTCTTGATA 609
Query 600 ATGGTTATGCCTACAAAGTGGATGGAGACATTTACTTCTCAGTCGACAAATTTCCAACAT 659
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 610 ATGGCTATGCCTACAAAGTTGATGGAGACATTTACTTCTCAGTCGACAAATTTCCAACAT 669
Query 660 ATGGAAAATTGTCTGGGCGAAAATTGGAAGATAACCGTGCAGGTGAGAGAGTTGCAGTAG 719
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 670 ATGGAAAATTGTCTGGGCGAAAATTAGAAGATAACCGTGCAGGTGAGAGAGTCGCAGTTG 729
Query 720 ACACAAGGAAGAAACATCCTGCAGATTTTGCTCTGTGGAAAACTGCAAAAGAAGGGGAAC 779
|||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 730 ACACGAGGAAGAAACATCCCGCAGATTTTGCTCTGTGGAAAGCTGCAAAAGAAGGGGAAC 789
Query 780 CCTTTTGGGAGAGTCCATGGGGAAGAGGAAGGCCCGGTTGGCACATAGAATGCAGTGCGA 839
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 790 CCTTTTGGGAGAGTCCGTGGGGAAGAGGAAGGCCCGGTTGGCACATAGAGTGCAGTGCGA 849
Query 840 TGAGCGCAGCTTATCTCGGTTATAGTTTTGACATACATGGTGGAGGAATGGATCTTGTGT 899
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 850 TGAGCGCGGCTTATCTCGGTTATAGTTTTGACATACATGGTGGCGGAATGGATCTTGTGT 909
Query 900 TCCCTCACCATGAAAATGAAATTGCTCAGAGTTGTGCTGCTTGTGATAGCAGCAACATCA 959
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 910 TCCCTCACCATGAAAATGAAATTGCTCAGAGTTGTGCTGCATGTGATAGCAGCAACATTA 969
Query 960 GCTATTGGATCCATAATGGTTTTGTTACTGTTGACTCTGAGAAGATGTCAAAATCCTTGG 1019
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 970 GCTATTGGATCCATAATGGTTTTGTTACTGTTGACTCCGAGAAGATGTCAAAATCCTTGG 1029
Query 1020 GGAATTTCTTCACAATCAGACAGGTTATAGACCTTTATCATCCTCTTGCTCTGAGACTTT 1079
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 GGAATTTCTTCACTATCAGACAGGTTATAGACCTTTATCATCCTCTTGCTCTGAGACTTT 1089
Query 1080 TTCTAATGGGAACTCACTATCGATCTCCTATCAATTACTCGGATTTCCTCCTCGAGAGTG 1139
| |||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1090 TCCTAATGGGAACTCATTATCGGTCTCCTATCAATTACTCCGATTTCCTCCTCGAGAGTG 1149
Query 1140 CTTCGGAGCGCATTTTTTATATTTATCAGACGTTGCACGACTGTGAAAGC-CTTTTAGGA 1198
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||
Sbjct 1150 CTTCGGAGCGCATTTTTTATATTTATCAGACGTTACACGACTGTGAAAGCGCTTT-AGGC 1208
Query 1199 GAGAGAGATTCGACATTTG-GCAATGATTCTGTTCCTTCAGACACTTTGACAACCATCAA 1257
|||| |||||||||||||| | |||| |||||||||||||||||||||||||| ||||||
Sbjct 1209 GAGAAAGATTCGACATTTGAG-AATGGTTCTGTTCCTTCAGACACTTTGACAAGCATCAA 1267
Query 1258 CACATTCCATAGTGAATTTGTGGCCTCGATGTCTGATGATCTCCTCACACCTGTAACCCT 1317
|||||||| || ||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 1268 CACATTCCGTACTGAATTTGTCGCCTCGATGTCTGATGATCTTCTCACACCTGTAACTCT 1327
Query 1318 GGCTGCAATGTCAGAACCATTGAAAACTATCAACGATATCATTCACACCCGAAAGGG-AA 1376
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1328 GGCTGCAATGTCAGAACCACTGAAAACTATCAACGATCTCATTCACACCCGAAAGGGGAA 1387
Query 1377 AAAAGCAAGCAAGAAGAGAAGAGTCACTTAAGGCTCTGGAGACAACAATCAGAGATGTTC 1436
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1388 AAAA-CAAGCAAGAAGAGAAGAGTCACTTAAGGCTCTAGAGACAACAATCAGAGATGTTC 1446
Query 1437 TTACTATCTTAGGGCTTATGCCCACAAGTTACTCAGAGGTTCTTGAGCAGCTAAAAGAGA 1496
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1447 TTACTATCTTAGGGCTTATGCCCACAAGTTACTCAGAGGTTCTCGAGCAGCTAAAAGAGA 1506
Query 1497 AAGCACTAAAGCGAGCTGGACTAGAAGAGGAAGATGTGTTGCAGAGAGTGCAAGAGAGAA 1556
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1507 AGGCACTAAAGCGAGCTGGACTAAAAGAGGAAGATGTGTTGCAGAGAGTGCAAGAGAGAA 1566
Query 1557 CAGACGCAAGGAAAAATAAAGAATACGAAAGATCTGATGCAATTAGGAAAGATTTGGCAA 1616
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1567 CAGACGCAAGGAAGAATAAAGAATACGAAAGATCTGATGCAATTAGGAAAGATTTGGCAA 1626
Query 1617 GTGTTGGGATCGCTTTGATGGATAGTCCTGAGGGAACAACTTGGAGACCAGCCATTCCTC 1676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1627 AAGTTGGGATCGCTTTGATGGATAGTCCTGAGGGAACAACTTGGAGACCAGCCATTCCTC 1686
Query 1677 TTGCCCTTCAAGAACCTGTAACTAC-AC-C-TTGA-TTTTT 1713
|||| |||||||||||||||||||| || | |||| |||||
Sbjct 1687 TTGCACTTCAAGAACCTGTAACTACTACACCTTGAGTTTTT 1727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91113989175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5