BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482047
Length=1560
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31190.1 | Symbols: RUS2, WXR1 | Protein of unknown function... 1487 0.0
> AT2G31190.1 | Symbols: RUS2, WXR1 | Protein of unknown function,
DUF647 | chr2:13291226-13293762 REVERSE LENGTH=1615
Length=1615
Score = 1487 bits (805), Expect = 0.0
Identities = 907/957 (95%), Gaps = 4/957 (0%)
Strand=Plus/Plus
Query 1 GGCGATTACTGTTGCGGCGGTTCACTCGAACTCCGGCGACTC-CAACGTTAGAAACCTGA 59
|||||||||||||| || ||||||||| |||||||||||||| |||||| | |||||||
Sbjct 1 GGCGATTACTGTTGTGGTGGTTCACTCCAACTCCGGCGACTCTTAACGTTCGGAACCTGA 60
Query 60 CTGAGCCGTCGTCTCTCAGATATGCAGTTTC-T--GGAGAAGGTGAAGTTGATAAAGAAG 116
||| ||| |||| ||||||| |||||||||| | |||||||||||||||||||||||||
Sbjct 61 CTGTGCCATCGTGTCTCAGAGATGCAGTTTCTTCAGGAGAAGGTGAAGTTGATAAAGAAG 120
Query 117 GAAGAGCCAGTAATGGTGAAGAACCCTGAAGACTTTCCGGTTTACTGGTTCGAAACCTCT 176
||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 GAAGACCCAGTAATGTTGAAGAGCCCTGAAGACTTTCCGGTTTACTGGTTCGAAACCTCT 180
Query 177 GATTCTGTCTCTCACCGTTATCAGTTCCAATCCGACGGCCACCTCTCTATGAAAGTTGTT 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GATTCTGTCTCTCACCGTTATCAGTTCCAATCCGACGGCCACCTCTCTATGAAAGTTGTT 240
Query 237 GATGATGCAAGACCTGTTCCTCAGAAGATGGTTGAATCCTTCCTTAACAAGTTCTTCCCT 296
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 241 GATGATGCAAGACCTGTTCCTCAGAAGATGGTTGAATCTTTCCTTAACAAGTTCTTTCCT 300
Query 297 TCTGGTTATCCATACAGTGTAAACGAAGGATATCTTAGGTACACTCAATTTCGAGCACTT 356
|||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 301 TCTGGTTATCCATACAGTGTCAACGAAGGATATCTTAGGTACACACAGTTTCGAGCACTT 360
Query 357 CAGCATTTCTCCAGTGCAGCATTATCCGTGTTATCGACGCAGTCACTGCTGTTTGCTGCA 416
||||||||||| |||||||||||||| ||||||||||| ||||||||| |||||||||||
Sbjct 361 CAGCATTTCTCTAGTGCAGCATTATCAGTGTTATCGACTCAGTCACTGTTGTTTGCTGCA 420
Query 417 GGCTTGCGGCCTACACCGGCTCAAGCAACTGTTGTTAGCTGGATATTGAAGGATGGGATG 476
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGCTTGCGGCCTACACCGGCACAAGCAACTGTTGTTAGCTGGATATTGAAGGATGGGATG 480
Query 477 CAGCATGTGGGAAAGCTGATTTGTAGCAATTTGGGTGCAAGAATGGATTCTGAGCCTAAA 536
|| ||||| |||||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 481 CAACATGTCGGAAAGCTAATATGTAGCAATTTGGGTGCAAGAATGGACTCTGAGCCTAAA 540
Query 537 CGGTGGAGAATTCTGGCTGACGTGCTCTACGATCTTGGTACTGGTCTGGAACTTGTTTCT 596
|||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 541 CGGTGGAGGATTCTGGCTGACGTGCTTTACGATCTTGGTACTGGTCTGGAACTCGTTTCT 600
Query 597 CCATTATGCCCGCATCTGTTTCTTGAAATGGCTGGTCTTGGGAATTTCGCTAAGGGAATG 656
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 601 CCATTATGCCCGCATCTGTTTCTTGAAATGGCTGGTCTGGGGAATTTTGCTAAGGGAATG 660
Query 657 GCTACGGTTGCAGCAAGGGCAACAAGATTACCAATCTATTCATCTTTCGCCAAAGAAGGA 716
||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 661 GCTACAGTTGCAGCAAGGGCAACAAGATTACCAATATATTCATCTTTTGCCAAAGAAGGA 720
Query 717 AATCTTAGTGACATTTTTGCAAAAGGAGAAGCTATCTCTACTCTTTTTAATGTTGCGGGG 776
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 721 AATCTTAGTGACATTTTTGCAAAAGGAGAAGCTATCTCTACTCTTTTCAATGTTGCCGGG 780
Query 777 ATAGGTGCTGGGATTCAACTTGCGTCAACAATATGTTCATCAATGGAGGGAAAGTTGGTG 836
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 781 ATAGGTGCTGGTATTCAACTTGCGTCCACAATATGTTCATCAATGGAGGGAAAGTTGGTG 840
Query 837 GTTGGGTCGATTCTTTCGGTTGTACATGTGTATAGCGTTGTAGAACAAATGCGAGGAGTA 896
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 841 GTTGGGTCAATTCTTTCGGTTGTACATGTGTATAGCGTTGTAGAACAAATGCGAGGGGTA 900
Query 897 CCTATCAACACACTGAATCCACAGAGAACCGCTTTGATCGTGGCTAATTATCTCAAG 953
|| ||||||||||||||||||||| ||||||||||||| |||||||||| |||||||
Sbjct 901 CCAATCAACACACTGAATCCACAGCGAACCGCTTTGATTGTGGCTAATTTTCTCAAG 957
Score = 955 bits (517), Expect = 0.0
Identities = 567/590 (96%), Gaps = 7/590 (1%)
Strand=Plus/Plus
Query 973 AGAGACCAATCCAAGACGCAGGAAACGTAAAAGTGGGAAGGGCTCTCCATAAAGCTGTGA 1032
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1016 AGAGACCAATCCAAGACGCAGGAAATGTAAAAGTGGGAAGGGCTCTCCATAAAGCTGTGA 1075
Query 1033 AGCCTTCTGAGGTGCAGAGACTAAAACAAGTGTTTGTAGAAGAGAAGTTTCTATTGAGTC 1092
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 AGCCTTCTGAGGTACAAAGACTAAAACAAGTGTTTGTAGAAGAGAAGTTTCTATTGAGTC 1135
Query 1093 ATGGAAAGTCATGGACCGATATGGTCTTAGAGCACGATGCAACTGGTGAAGACGCATTGC 1152
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1136 ATGGAAAGTCATGGACCGATATGGTCTTAGAGCACGATGCAACCGGTGAAGATGCATTGC 1195
Query 1153 GAGGGTGGTTAGTTGCAGCATATGCCAAGTCAATGACAAAGATATACAATGACCCTGATG 1212
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1196 GAGGGTGGTTAGTTGCAGCATATGTCAAGTCAATGACAAAGATATATAATGACCCTGATG 1255
Query 1213 ACATTATATTGCAAGACGCGTATGACAAAATGAACGATGTCTTCAATCCATTTTTATCTC 1272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 ACATTATATTGCAAGACGCGTATGACAAAATGAACGATGTCTTCAATCCATTTTTATCTC 1315
Query 1273 AAGTGCAGGCTAAAGGATGGTATACTGATAGATTTCTCGATGGCACGGGAACAAGATTCG 1332
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1316 AAGTGCAAGCTAAAGGATGGTATACTGATAGATTTCTCGATGGCACGGGGACAAGATTTG 1375
Query 1333 CTTGGTAGCTCCGGAGTTTCGAGTAATTCTTTTGCTATTGTAATTTTT-ATTGTTTCAAG 1391
|||||||||||| ||||||||||||||| || ||||||||||||||| |||||||||||
Sbjct 1376 CTTGGTAGCTCCCGAGTTTCGAGTAATT-TT--GCTATTGTAATTTTTTATTGTTTCAAG 1432
Query 1392 TGTAAACACGAATTTGTAGGCTTAAGAAGTCTTTGTCCAGATCATGAATCCACAATCCAG 1451
| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||
Sbjct 1433 TATAAACACGAATTTGTAGGCGTAAGAAGTCTTTATCCAGATCATGAATCCACAATCTAG 1492
Query 1452 TT-TTTGAAGACTTTAGATGGAT-AGATTAGAGTGAGATTGTTAGGTGAAACAAAAGTTT 1509
| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1493 TACTTTGAAGACTT-AGATGGATTAGATTAGAGTGAGATTGTTAGGTGAAACAAAAGTTT 1551
Query 1510 GAAGGTACGGTTCTTGTCCTCGTTTGTACTTTTGTTTTGCCATTGTAAGT 1559
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 GAAGGTACGGTTCTTGTCCTCGTTTGTACTTTTGTTTTGCCATTGTAAGT 1601
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77007636030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5