BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482048
Length=1363
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31210.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 2056 0.0
> AT2G31210.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:13296143-13298277 FORWARD
LENGTH=1693
Length=1693
Score = 2056 bits (1113), Expect = 0.0
Identities = 1276/1354 (94%), Gaps = 13/1354 (1%)
Strand=Plus/Plus
Query 1 GACAACAAAGAAGGAGAAAGATCATCATCGTCTAACTTTTGGTTTTGTTTGCAG-AAAAA 59
||| ||||||||||| ||||||||||||| |||||||||| |||||| |||||| |||||
Sbjct 199 GACGACAAAGAAGGAAAAAGATCATCATCTTCTAACTTTT-GTTTTGGTTGCAGAAAAAA 257
Query 60 ATCAGTTGAAAATGTATGAGGAAAGTTCATGTTTTGATCCTAATCCGATGGTAGACAACA 119
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 258 ATCAGTTGAAAATGTATGAGGAAAGTTCATGTTTTGATCCTAATTCGATGGTGGACAACA 317
Query 120 ACGGCAGCTTCTGCGCGGCGGAAACAACTTTTCCGGTAAGCCACCAGTTCCAACCACCGG 179
||||| ||||||| |||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 318 ACGGCGGCTTCTGTGCGGCGGAAACAACTTTTACGGTAAGCCACCAGTTTCAACCACCGC 377
Query 180 TCGGAAGCACAACAAACAGCTTTAACGACGATCTTAAGCTTCCAACAATGGAGGAATTCT 239
| ||||||||||||||||||||| | |||||||||||||| ||||||||||| || ||||
Sbjct 378 TTGGAAGCACAACAAACAGCTTTGATGACGATCTTAAGCTCCCAACAATGGATGAGTTCT 437
Query 240 CTGCTTTCCCTTCTGTTATCTCTCTTCCAAACTCAGAAACTCAGAACCAAAACATCAGCA 299
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 438 CTGTTTTCCCTTCTGTTATCTCTCTCCCAAACTCAGAAACTCAGAACCAAAACATCAGCA 497
Query 300 ACAACAACCATTTGATCAATCAAATGATTCAAGAATCGAATTGGGGTGTTTCTGAAGACA 359
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 498 ACAACAACCATTTGATCAACCAAATGATTCAAGAATCGAATTGGGGTGTTTCTGAAGACA 557
Query 360 ACTCTGGTTTCTTCATGAACACTTCACATCCAAATACAACAACAACTCCAATTCCTGATC 419
||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 558 ACTCTAATTTCTTCATGAACACTTCACATCCAAACACAACAACAACTCCAATCCCTGATC 617
Query 420 TTCTCAGCCTCTTGCATTTGCCTAGATGCTCAATGGCATTACCAAGCTCGAATCTTTCGG 479
||||||||||||||||||||||||||||||| ||| |||||||||| | || | |
Sbjct 618 TTCTCAGCCTCTTGCATTTGCCTAGATGCTCTATGTCATTACCAAG--C---TC--T--G 668
Query 480 ATATAATGGCGGGTTCTTGCTTCACGTATGACCCGCTCTGCCACTTAAACCTTCCTCCAC 539
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 669 ATATAATGGCGGGTTCTTGCTTCACGTATGACCCGCTCTTTCACTTAAACCTTCCTCCAC 728
Query 540 AACCTCCATTGATCCCTTCTAATGACTACTCAGGGTACTTGCTTGGCATTGATACCAATA 599
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 729 AACCTCCATTGATCCCTTCTAATGACTACTCAGGGTACTTGCTTGGTATTGATACCAATA 788
Query 600 CTACTACTCAAGGAGATGAGTCCAATGTTGGAGATGAGAATAACAATGCTCAGTTCGATA 659
||||||||||| |||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 789 CTACTACTCAAAGAGATGAGTCTAATGTTGGAGATGAAAATAACAATGCTCAGTTTGATA 848
Query 660 GCGGAATCATCGAGTTTAGCAAAGAAATTAGACGTAAAGGAAGAGGAAAGCGAAAGAACA 719
||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 849 GCGGAATCATCGAGTTTAGCAAAGAGATTAGGCGTAAAGGAAGAGGGAAGCGAAAGAACA 908
Query 720 AACCTTTTACAACAGAACGTGAGCGAAGATGTCACTTGAATGAGCGGTACGAGGCCTTGA 779
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 AACCTTTTACTACAGAACGTGAGCGAAGATGTCACTTGAATGAGCGGTACGAGGCCTTGA 968
Query 780 AATTACTCATCCCTAACCCGAGTAAGGGCGATAGAGCATCCATTCTTCAAGATGGAATCG 839
|||| ||||| |||| |||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 969 AATTGCTCATTCCTAGCCCGAGTAAGGGAGATAGAGCATCAATTCTTCAAGATGGAATCG 1028
Query 840 ATTACATCAACGAGTTACGCAGAAGAGTAAGCGAGCTTAAGTATTTGGTTGAGAGGAAAA 899
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 1029 ATTACATCAACGAGTTACGCAGAAGAGTAAGTGAGCTTAAGTATTTGGTAGAGAGGAAGA 1088
Query 900 GATGTGGTGGGAGacacaagaacaatgaattagacaacaacattaacaacaacaacTCGA 959
||||||||||||||||||||||||||||| ||||| |||||| ||||||||| |||| |
Sbjct 1089 GATGTGGTGGGAGACACAAGAACAATGAAGTAGACGACAACAATAACAACAAAAACTTGG 1148
Query 960 atgatcatgataatgatgaagatgat-attgatgatgaAAACATGGAGAAGAAGCCAGAG 1018
||||||||| |||||| || |||||| | ||||||||||||||||||||||||||| |||
Sbjct 1149 ATGATCATGGTAATGAAGATGATGATGA-TGATGATGAAAACATGGAGAAGAAGCCGGAG 1207
Query 1019 AGCGATGTAGTAGACCAATGTTCAAGCAACAACTCGCTGAGATGTTCATGGCTGCAGAGG 1078
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1208 AGCGATGTAATAGACCAATGTTCAAGCAACAACTCGCTGAGATGTTCATGGCTGCAGAGG 1267
Query 1079 AAATCAAAAGTAACAGAAGTTGATGTTAGGATTGTTGATGATGAAGTAACAATCAAAGTT 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1268 AAATCAAAAGTAACAGAAGTTGATGTTAGGATTGTTGATGATGAAGTAACAATCAAAGTT 1327
Query 1139 GTGCAAAAGAAGAAGATTAATTGTTTGTTACTTGTCTCCAAAGTACTTGATCAACTTCAG 1198
|| || ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1328 GTTCAGAAGAAGAAGATCAATTGTTTGTTACTTGTCTCCAAAGTACTTGATCAGCTTCAG 1387
Query 1199 CTTGATCTTTACCATGTTGCAGGAGGACAGATTGGTGAGCATTACAGTTTCTTGTTCAAC 1258
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1388 CTTGATCTTCACCATGTTGCCGGAGGACAGATTGGTGAGCATTACAGTTTCTTGTTCAAC 1447
Query 1259 ACCAAGATTTATGAAGGATCAACAATATATGCAAGTGCAATAGCAAACAGAGTGATTGAA 1318
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1448 ACCAAGATATATGAAGGATCAACAATATATGCAAGTGCAATAGCAAACAGAGTGATTGAA 1507
Query 1319 GTTGTGGACAAACACTACATGGCTGCTCTTCCCA 1352
|||||||| ||||||||||||||| |||||||||
Sbjct 1508 GTTGTGGATAAACACTACATGGCTTCTCTTCCCA 1541
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67118128665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5