BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482049
Length=1585
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31220.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 2329 0.0
AT2G31215.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 171 3e-41
> AT2G31220.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:13302681-13304869 FORWARD
LENGTH=1697
Length=1697
Score = 2329 bits (1261), Expect = 0.0
Identities = 1499/1608 (93%), Gaps = 39/1608 (2%)
Strand=Plus/Plus
Query 1 TTGTTTAAGAAATTTGCTTCTTCTCCTGAAAATTGAGAAGACAAACATAGAGAAGAACTA 60
|||||||| ||| || ||||||||||||||||||||||||||| || |||||||||| ||
Sbjct 1 TTGTTTAAAAAACTTACTTCTTCTCCTGAAAATTGAGAAGACAGACGTAGAGAAGAATTA 60
Query 61 ATTGTAGCAAAGGTGTTAAAGAATCATCT--AG-ACTCGTTGAACCATCTT-CATGGAAG 116
|||||| |||||||||||||||||||||| || |||||||||||||| || ||||||||
Sbjct 61 ATTGTAACAAAGGTGTTAAAGAATCATCTAGAGTACTCGTTGAACCAT-TTCCATGGAAG 119
Query 117 AAGAAAGAGAAAGCCTTTATGAGGAAATGGGTTGTTTCGATCCCAACACTCCGGCAGAAG 176
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 120 AAGAAAGAGAAAGCCTTTACGAGGAAATGGGTTGTTTCGATCCCAACACTCCAGCAGAAG 179
Query 177 TTACGGTGGAGAGCAGCTTCTCTCAAGCCGAACAACCACCACCACCGCCGCAAGTTCTTG 236
||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||| |
Sbjct 180 TTACGGTGGAGAGTAGCTTCTCTCAAGCCGAACCACCACCACCACCACCGCAAGTTCTGG 239
Query 237 TCGCCGGTAGTACAAGCAACAGTAACTGCAGTGTTGAGGTAGAAGAGCTCTCTGAATTCC 296
| ||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 240 TTGCCGGAAGCACAAGCAACAGCAACTGCAGTGTTGAGGTAGAAGAGCTCTCTGAATTCC 299
Query 297 ATCTCAGCCCACAAGATTGTCCTCAAGCTTCTTCAACACCTCTTCAATTTCACATCAAtc 356
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 300 ATCTCAGCCCACAAGATTGTCCTCAAGCTTCTTCAACACCTCTCCAGTTTCACATCAATC 359
Query 357 ctcctcctcctcctcctcctcctTGTGATCAATTCCACAATAATTTGATTCACCAAATGG 416
|||||||||| || |||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 360 CTCCTCCTCCACCACCTCCTCCTTGTGATCAACTCCACAACAATTTGATTCACCAAATGG 419
Query 417 CTTCACAT---CAACAACACTCTAGTTGGGAAAATGGGTATCAAGATTTTGTGAATTTGG 473
|||||||| ||||||||||||| |||||| ||||||||||| ||||||||||||||||
Sbjct 420 CTTCACATCAACAACAACACTCTAATTGGGATAATGGGTATCAGGATTTTGTGAATTTGG 479
Query 474 GTCCAAACTCTGCAACAACTCCTGATTTGCTTAGTCTCTTACACTTGCCTAGATGCTCAT 533
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GACCTAACTCTGCAACAACTCCTGATTTGCTTAGTCTCTTACACTTGCCTAGATGCTCAT 539
Query 534 TGCCTCCTAATCATCATCCTTCTTCTATGCTTCCTAACTCATCAATCTCATTCTCAGACA 593
|||||||||||||||||||||| |||||||| ||| | | | ||| ||||||||||
Sbjct 540 TGCCTCCTAATCATCATCCTTCCTCTATGCTACCT-A--C--C--TCT--TTCTCAGACA 590
Query 594 TTATGTCTTCTTCTTCTGCTGCTGCTGTTATGTACGATCCTCTCTTTCATCTGAATTTCC 653
||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||
Sbjct 591 TTATGTCTTCTTCTTCTGCTGCTGCTGTTATGTACGACCCTCTCTTCCATTTGAATTTCC 650
Query 654 CTATGCAGCCTCGAGACCAGAACCAGCTAAGAAATGGGTCTTGTTTACTTGGAGTTGAAG 713
||||||||||| |||| ||||||||||||||||| || ||||||||||||||||||||||
Sbjct 651 CTATGCAGCCTAGAGATCAGAACCAGCTAAGAAACGGCTCTTGTTTACTTGGAGTTGAAG 710
Query 714 ATCAGATTCAGATGGATGCTAATGGAGGAGTGAATGTTATGTATTTTGAAGGAGCAAACA 773
|||| |||||||||||||||||||||||| |||||||| |||| ||||||||||| | |
Sbjct 711 ATCAAATTCAGATGGATGCTAATGGAGGAATGAATGTTTTGTACTTTGAAGGAGC--A-A 767
Query 774 ACAACAACAATAATGGTGGATTTGAGAATGAGATTCTCGAGTTTAACAATGGAGTTACTC 833
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 768 ACAACAAC---AATGGTGGATTTGAGAATGAGATTCTTGAGTTTAACAATGGAGTTACTC 824
Query 834 GTAAAGGAAGAGGATCAAGAAAGTCGAGAACTTTCCCTACCGAACGCGAAAGACGAGTTC 893
||||||||||||||||||||||||||||||||| |||||| ||||| || ||||||||||
Sbjct 825 GTAAAGGAAGAGGATCAAGAAAGTCGAGAACTTCCCCTACAGAACGTGAGAGACGAGTTC 884
Query 894 ACTTCAATGACCGTTTCTTCGACTTAAAGAACCTCATTCCAAATCCCACAAAGATTGGTA 953
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 885 ACTTCAATGATCGTTTCTTCGACTTAAAGAACCTCATTCCAAATCCCACAAAGATTGATA 944
Query 954 GAGCATCTATCGTTGGAGAGGCGATAGACTACATCAAAGAGCTGTTAAGGACAATAGAGG 1013
||||||| || ||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 945 GAGCATCGATAGTTGGAGAGGCGATAGATTACATCAAAGAGCTTTTAAGGACAATAGAGG 1004
Query 1014 AGTTTAAGATGCTTGTGGAGAAGAAGAGATGTGGGAGATTCaggagcaagaagagagcta 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 AGTTTAAGATGCTTGTGGAGAAGAAGAGATGTGGGAGATTCAGGAGCAAGAAGAGAGCTA 1064
Query 1074 gagttggtga-gg-g-aggaggagaagatcaagaagaagaagaagaCACTGTGAATTACA 1130
|||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 GAGTTGGTGAAGGAGGAGGAGGAGAAGATCAAGAAGAAGAAGAAGACACTGTGAATTACA 1124
Query 1131 AGCCACAGAGCGAAGTAGACCAATCTGGCTTCAACAAGAACAACAACACCTCACTGAGAT 1190
|||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||
Sbjct 1125 AGCCACAGAGCGAAGTAGACCAGTCTTGCTTCAACAAGAACAACAACAACTCACTGAGAT 1184
Query 1191 GTTCTTGGCTGAAGAGGAAATCGAAAGTCACTGAGATCGATGTACGCATAATCGATGATG 1250
|||| ||||| |||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 1185 GTTCATGGCTTAAGAGGAAATCGAAAGTCACTGAGGTCGATGTACGTATAATCGATGATG 1244
Query 1251 AAGTAACCATCAAGCTTGTCCAGAAGAAGAAGATTAACTGTTTGTTGTTCACCACCAAAG 1310
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1245 AAGTAACCATCAAGCTTGTTCAGAAGAAGAAGATTAACTGTTTGTTGTTCACCACCAAAG 1304
Query 1311 TTCTTGATCAGCTTCAGCTAGATCTCCACCATGTTGCAGGTGGACAGATTGGTGAGCACT 1370
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct 1305 TTCTTGATCAGCTTCAGCTAGATCTTCACCATGTTGCAGGTGGACAGATTGGTGAACATT 1364
Query 1371 ACAGCTTCTTGTTCAACACTAAGATTTGTGAAGGATCTTGTGTGTATGCAAGTGGAATTG 1430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 ACAGCTTCTTGTTCAACACTAAGATTTGTGAAGGATCTTGTGTGTATGCAAGTGGAATTG 1424
Query 1431 CAGACACAGTGATGGAGGTTGTGGAGAAACAGTACATGGAAGCTGTTCCTACCAACGGCT 1490
|||||||| |||||||||| |||||||| |||||||||||||||||||||| ||||||||
Sbjct 1425 CAGACACATTGATGGAGGTCGTGGAGAAGCAGTACATGGAAGCTGTTCCTAGCAACGGCT 1484
Query 1491 ACTAGCTTCCAGACACACTTATGGAGTGGTTAATTGCTTTTTAATAACTTTT---A-A-- 1544
||||| ||||||||||||||||||||| ||| |||||||||||||||||||| | |
Sbjct 1485 ACTAGATTCCAGACACACTTATGGAGTAGTTTATTGCTTTTTAATAACTTTTGTGATACC 1544
Query 1545 --T-----GACTGATTAAGTTATTAATCACTTTGGTAATTTTCAAGTT 1585
| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1545 CCTCTAATGACTGATTAAGTTATTAATCACTTTGGTAATTTTCAAGTT 1592
> AT2G31215.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:13299807-13300302 FORWARD
LENGTH=390
Length=390
Score = 171 bits (92), Expect = 3e-41
Identities = 139/161 (86%), Gaps = 6/161 (4%)
Strand=Plus/Plus
Query 837 AAGGAAGAGGATC-AAGAAAGTCGAGAACTTTCCCTACCGAACGCGAAAGACGAGTTCAC 895
|||||| |||||| ||| |||||||||||||||| ||| |||||||||||||||| || |
Sbjct 44 AAGGAAAAGGATCAAAG-AAGTCGAGAACTTTCCTTACAGAACGCGAAAGACGAGCTCTC 102
Query 896 TTCAATGACCGTTTCTTCGACTTAAAGAACCTCATTCCAAATCCCACAAAGATTGGTAGA 955
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 103 TTCAATGACCGTTTCTTCGACTTAAAGAACCTCATTCCAAATCCCACAAAGGGAGGT-GA 161
Query 956 -GCATCTATCGTTGGAGA-GGCGATAGACTACATCAAAGAG 994
||||| || ||| ||| || ||| | |||||||| |||
Sbjct 162 AGCATCCATTGTTCAAGATGG-GATCGTTTACATCAACGAG 201
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78262649655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5