BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg482049 Length=1585 Score E Sequences producing significant alignments: (Bits) Value AT2G31220.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 2329 0.0 AT2G31215.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 171 3e-41 > AT2G31220.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:13302681-13304869 FORWARD LENGTH=1697 Length=1697 Score = 2329 bits (1261), Expect = 0.0 Identities = 1499/1608 (93%), Gaps = 39/1608 (2%) Strand=Plus/Plus Query 1 TTGTTTAAGAAATTTGCTTCTTCTCCTGAAAATTGAGAAGACAAACATAGAGAAGAACTA 60 |||||||| ||| || ||||||||||||||||||||||||||| || |||||||||| || Sbjct 1 TTGTTTAAAAAACTTACTTCTTCTCCTGAAAATTGAGAAGACAGACGTAGAGAAGAATTA 60 Query 61 ATTGTAGCAAAGGTGTTAAAGAATCATCT--AG-ACTCGTTGAACCATCTT-CATGGAAG 116 |||||| |||||||||||||||||||||| || |||||||||||||| || |||||||| Sbjct 61 ATTGTAACAAAGGTGTTAAAGAATCATCTAGAGTACTCGTTGAACCAT-TTCCATGGAAG 119 Query 117 AAGAAAGAGAAAGCCTTTATGAGGAAATGGGTTGTTTCGATCCCAACACTCCGGCAGAAG 176 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 120 AAGAAAGAGAAAGCCTTTACGAGGAAATGGGTTGTTTCGATCCCAACACTCCAGCAGAAG 179 Query 177 TTACGGTGGAGAGCAGCTTCTCTCAAGCCGAACAACCACCACCACCGCCGCAAGTTCTTG 236 ||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||| | Sbjct 180 TTACGGTGGAGAGTAGCTTCTCTCAAGCCGAACCACCACCACCACCACCGCAAGTTCTGG 239 Query 237 TCGCCGGTAGTACAAGCAACAGTAACTGCAGTGTTGAGGTAGAAGAGCTCTCTGAATTCC 296 | ||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 240 TTGCCGGAAGCACAAGCAACAGCAACTGCAGTGTTGAGGTAGAAGAGCTCTCTGAATTCC 299 Query 297 ATCTCAGCCCACAAGATTGTCCTCAAGCTTCTTCAACACCTCTTCAATTTCACATCAAtc 356 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 300 ATCTCAGCCCACAAGATTGTCCTCAAGCTTCTTCAACACCTCTCCAGTTTCACATCAATC 359 Query 357 ctcctcctcctcctcctcctcctTGTGATCAATTCCACAATAATTTGATTCACCAAATGG 416 |||||||||| || |||||||||||||||||| ||||||| ||||||||||||||||||| Sbjct 360 CTCCTCCTCCACCACCTCCTCCTTGTGATCAACTCCACAACAATTTGATTCACCAAATGG 419 Query 417 CTTCACAT---CAACAACACTCTAGTTGGGAAAATGGGTATCAAGATTTTGTGAATTTGG 473 |||||||| ||||||||||||| |||||| ||||||||||| |||||||||||||||| Sbjct 420 CTTCACATCAACAACAACACTCTAATTGGGATAATGGGTATCAGGATTTTGTGAATTTGG 479 Query 474 GTCCAAACTCTGCAACAACTCCTGATTTGCTTAGTCTCTTACACTTGCCTAGATGCTCAT 533 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 GACCTAACTCTGCAACAACTCCTGATTTGCTTAGTCTCTTACACTTGCCTAGATGCTCAT 539 Query 534 TGCCTCCTAATCATCATCCTTCTTCTATGCTTCCTAACTCATCAATCTCATTCTCAGACA 593 |||||||||||||||||||||| |||||||| ||| | | | ||| |||||||||| Sbjct 540 TGCCTCCTAATCATCATCCTTCCTCTATGCTACCT-A--C--C--TCT--TTCTCAGACA 590 Query 594 TTATGTCTTCTTCTTCTGCTGCTGCTGTTATGTACGATCCTCTCTTTCATCTGAATTTCC 653 ||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||| Sbjct 591 TTATGTCTTCTTCTTCTGCTGCTGCTGTTATGTACGACCCTCTCTTCCATTTGAATTTCC 650 Query 654 CTATGCAGCCTCGAGACCAGAACCAGCTAAGAAATGGGTCTTGTTTACTTGGAGTTGAAG 713 ||||||||||| |||| ||||||||||||||||| || |||||||||||||||||||||| Sbjct 651 CTATGCAGCCTAGAGATCAGAACCAGCTAAGAAACGGCTCTTGTTTACTTGGAGTTGAAG 710 Query 714 ATCAGATTCAGATGGATGCTAATGGAGGAGTGAATGTTATGTATTTTGAAGGAGCAAACA 773 |||| |||||||||||||||||||||||| |||||||| |||| ||||||||||| | | Sbjct 711 ATCAAATTCAGATGGATGCTAATGGAGGAATGAATGTTTTGTACTTTGAAGGAGC--A-A 767 Query 774 ACAACAACAATAATGGTGGATTTGAGAATGAGATTCTCGAGTTTAACAATGGAGTTACTC 833 |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 768 ACAACAAC---AATGGTGGATTTGAGAATGAGATTCTTGAGTTTAACAATGGAGTTACTC 824 Query 834 GTAAAGGAAGAGGATCAAGAAAGTCGAGAACTTTCCCTACCGAACGCGAAAGACGAGTTC 893 ||||||||||||||||||||||||||||||||| |||||| ||||| || |||||||||| Sbjct 825 GTAAAGGAAGAGGATCAAGAAAGTCGAGAACTTCCCCTACAGAACGTGAGAGACGAGTTC 884 Query 894 ACTTCAATGACCGTTTCTTCGACTTAAAGAACCTCATTCCAAATCCCACAAAGATTGGTA 953 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 885 ACTTCAATGATCGTTTCTTCGACTTAAAGAACCTCATTCCAAATCCCACAAAGATTGATA 944 Query 954 GAGCATCTATCGTTGGAGAGGCGATAGACTACATCAAAGAGCTGTTAAGGACAATAGAGG 1013 ||||||| || ||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 945 GAGCATCGATAGTTGGAGAGGCGATAGATTACATCAAAGAGCTTTTAAGGACAATAGAGG 1004 Query 1014 AGTTTAAGATGCTTGTGGAGAAGAAGAGATGTGGGAGATTCaggagcaagaagagagcta 1073 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1005 AGTTTAAGATGCTTGTGGAGAAGAAGAGATGTGGGAGATTCAGGAGCAAGAAGAGAGCTA 1064 Query 1074 gagttggtga-gg-g-aggaggagaagatcaagaagaagaagaagaCACTGTGAATTACA 1130 |||||||||| || | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1065 GAGTTGGTGAAGGAGGAGGAGGAGAAGATCAAGAAGAAGAAGAAGACACTGTGAATTACA 1124 Query 1131 AGCCACAGAGCGAAGTAGACCAATCTGGCTTCAACAAGAACAACAACACCTCACTGAGAT 1190 |||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||| Sbjct 1125 AGCCACAGAGCGAAGTAGACCAGTCTTGCTTCAACAAGAACAACAACAACTCACTGAGAT 1184 Query 1191 GTTCTTGGCTGAAGAGGAAATCGAAAGTCACTGAGATCGATGTACGCATAATCGATGATG 1250 |||| ||||| |||||||||||||||||||||||| |||||||||| ||||||||||||| Sbjct 1185 GTTCATGGCTTAAGAGGAAATCGAAAGTCACTGAGGTCGATGTACGTATAATCGATGATG 1244 Query 1251 AAGTAACCATCAAGCTTGTCCAGAAGAAGAAGATTAACTGTTTGTTGTTCACCACCAAAG 1310 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1245 AAGTAACCATCAAGCTTGTTCAGAAGAAGAAGATTAACTGTTTGTTGTTCACCACCAAAG 1304 Query 1311 TTCTTGATCAGCTTCAGCTAGATCTCCACCATGTTGCAGGTGGACAGATTGGTGAGCACT 1370 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || | Sbjct 1305 TTCTTGATCAGCTTCAGCTAGATCTTCACCATGTTGCAGGTGGACAGATTGGTGAACATT 1364 Query 1371 ACAGCTTCTTGTTCAACACTAAGATTTGTGAAGGATCTTGTGTGTATGCAAGTGGAATTG 1430 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1365 ACAGCTTCTTGTTCAACACTAAGATTTGTGAAGGATCTTGTGTGTATGCAAGTGGAATTG 1424 Query 1431 CAGACACAGTGATGGAGGTTGTGGAGAAACAGTACATGGAAGCTGTTCCTACCAACGGCT 1490 |||||||| |||||||||| |||||||| |||||||||||||||||||||| |||||||| Sbjct 1425 CAGACACATTGATGGAGGTCGTGGAGAAGCAGTACATGGAAGCTGTTCCTAGCAACGGCT 1484 Query 1491 ACTAGCTTCCAGACACACTTATGGAGTGGTTAATTGCTTTTTAATAACTTTT---A-A-- 1544 ||||| ||||||||||||||||||||| ||| |||||||||||||||||||| | | Sbjct 1485 ACTAGATTCCAGACACACTTATGGAGTAGTTTATTGCTTTTTAATAACTTTTGTGATACC 1544 Query 1545 --T-----GACTGATTAAGTTATTAATCACTTTGGTAATTTTCAAGTT 1585 | |||||||||||||||||||||||||||||||||||||||| Sbjct 1545 CCTCTAATGACTGATTAAGTTATTAATCACTTTGGTAATTTTCAAGTT 1592 > AT2G31215.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:13299807-13300302 FORWARD LENGTH=390 Length=390 Score = 171 bits (92), Expect = 3e-41 Identities = 139/161 (86%), Gaps = 6/161 (4%) Strand=Plus/Plus Query 837 AAGGAAGAGGATC-AAGAAAGTCGAGAACTTTCCCTACCGAACGCGAAAGACGAGTTCAC 895 |||||| |||||| ||| |||||||||||||||| ||| |||||||||||||||| || | Sbjct 44 AAGGAAAAGGATCAAAG-AAGTCGAGAACTTTCCTTACAGAACGCGAAAGACGAGCTCTC 102 Query 896 TTCAATGACCGTTTCTTCGACTTAAAGAACCTCATTCCAAATCCCACAAAGATTGGTAGA 955 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 103 TTCAATGACCGTTTCTTCGACTTAAAGAACCTCATTCCAAATCCCACAAAGGGAGGT-GA 161 Query 956 -GCATCTATCGTTGGAGA-GGCGATAGACTACATCAAAGAG 994 ||||| || ||| ||| || ||| | |||||||| ||| Sbjct 162 AGCATCCATTGTTCAAGATGG-GATCGTTTACATCAACGAG 201 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78262649655 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5