BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482051
Length=2050
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31240.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 3022 0.0
> AT2G31240.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:13317415-13319560 REVERSE LENGTH=2051
Length=2051
Score = 3022 bits (1636), Expect = 0.0
Identities = 1924/2062 (93%), Gaps = 24/2062 (1%)
Strand=Plus/Plus
Query 1 TTTTTGCTAACGAGAGGATTTTCTCGACGCGAGCTCCGGCCATGAAAAGCCTT-TCGATT 59
|||||| || |||||||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 2 TTTTTGTTAGCGAGAGGATTTTCTCGACGCGAGCTCCGGCAATGAAAAG-TTTATCGATT 60
Query 60 TCTCTAATCCGTCGGCTTCATTTCCATAAATTCAGACCAATCCCACTTCCAATCCACCTG 119
|||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||
Sbjct 61 TCTCTAATCCGTCGGCTTCATTTCCACAAAATCAGACCAATCCCACTTTCAATCCACCTT 120
Query 120 AATACTGCTTCTTCTTTTTCTTCTTCATCCTCTTCTCTGGTCTCGCCAACACGCGAAGTC 179
||| |||||||||| || ||||| |||||||||||| |||||||| |||||||| ||
Sbjct 121 AATGCTGCTTCTTC---ATCGTCTTCGTCCTCTTCTCTGATCTCGCCAGCACGCGAAATC 177
Query 180 TCCACTTGTTGCAGAAGAACCGATG-GCATGATCAAGAGTCAGTTCTGGGTCAATCCATA 238
|||||| | |||||||||||| ||| | |||||||| ||||||||||||||||||||||
Sbjct 178 TCCACTAGCTGCAGAAGAACCAATGATC-TGATCAAGCGTCAGTTCTGGGTCAATCCATA 236
Query 239 TCGGAATTTTAATACCCATGTCGAGGAACCTCCAGAGCTTTCGTCAAGTGATAAGGAAAA 298
||||||||| ||||||||||||||||||||||| ||| |||||||| |||||| |||||
Sbjct 237 TCGGAATTTGAATACCCATGTCGAGGAACCTCCGGAGATTTCGTCATCTGATAAAGAAAA 296
Query 299 AATCGATCTCGAAGAAGCGTTTGAGTCGGCGAATACCACTGATGAAATGGTCCGTTTGTT 358
||||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||
Sbjct 297 AATCGATCTCGAAGAAGCGTTCGAGTCAGCGAACACCACTGATGAAATGGTACGTTTGTT 356
Query 359 CAAGGAAATGGAGTTGA-CTTTCGAAGGGAACGAATTAGGTTTATCCGCTTTGAAATTAG 417
|||||| |||||||| | | |||||||||||||||||||||||||| |||||||||||||
Sbjct 357 CAAGGAGATGGAGTT-ATCATTCGAAGGGAACGAATTAGGTTTATCTGCTTTGAAATTAG 415
Query 418 GTCTCCATCTCGATCGTGAAGGTGAGGATCCTGAAAAGGTTATGTCTTACGCTGATAAAG 477
| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 416 GGCTCCATCTCGATCGTGAAGGTGAAGATCCTGAAAAGGTTCTGTCTTACGCTGATAAAG 475
Query 478 CTCTTAAATCTTTCGATGGAGATGGCAATAAACCTAATCTTCTTGTTGCCATGGCGTTGC 537
|||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||| ||
Sbjct 476 CTCTTAAATCATTCGATGGAGATGGTAATAAACCTAATCTTCTCGTTGCTATGGCGTCGC 535
Query 538 AATTAATGGGTTCTGCTAATTACGGTTTAAAACGGTTTAGTGATAGTTTAGGTTACTTGA 597
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 536 AATTAATGGGTTCTGCTAATTACGGTTTGAAACGTTTTAGTGATAGTTTAGGTTACTTGA 595
Query 598 ACAGAGCTAATCGGATTCTTGTTAAGTTAGAGGCAGATGGTGATTGTGTTGTGGAAGACG 657
| ||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 596 ATAGAGCTAATAGGATTCTTGTGAAGTTAGAGGCGGATGGTGATTGTGTTGTGGAAGACG 655
Query 658 TTAGGCCGGTTTTACACGCCGTGCAACTCGAGCTTGCTAATGTTAAGAATGCTATGGGGA 717
||||||| ||||||||||| ||||| || ||||||||||||||||||||||||||||| |
Sbjct 656 TTAGGCCTGTTTTACACGCTGTGCAGCTTGAGCTTGCTAATGTTAAGAATGCTATGGGAA 715
Query 718 GGCGAGAGGAAGCTATTGAGAATTTGAAGAAGAGTTTGGAGATTAAGGAGATGACTTTTG 777
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 716 GGAGAGAGGAAGCTATTGAGAATTTGAAGAAGAGTTTGGAGATAAAGGAGATGACTTTTG 775
Query 778 ATGAAGATAGTAAAGAGATGGGTGTGGCGAATCGGAGTCTTGCTGATGCTTATGTTGCGG 837
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 776 ATGAAGATAGTAAAGAGATGGGTGTTGCGAATCGGAGTCTTGCTGATGCTTATGTTGCGG 835
Query 838 TTTTGAATTTTAATGAGGCTTTGCCTTATGCGTTGAAGGCGTTGGAGATACATAAGAAGG 897
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 836 TTTTGAATTTTAATGAGGCTTTGCCTTATGCGTTGAAGGCGTTGGAGATTCATAAGAAGG 895
Query 898 AATTGGGGAATAATTCAGCTGAGGTTGCGCAGGATCGAAGGCTACTCGGTGTGATTTATA 957
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 896 AGTTGGGGAATAATTCAGCTGAGGTTGCGCAGGATCGGAGGCTACTCGGTGTGATTTATA 955
Query 958 GCGGTTTAGAGCAACATGACAAGGCATTGGAGCAGAACCGATTGTCTCAGAGAGTGTTAA 1017
| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 956 GTGGTTTGGAGCAACATGACAAGGCGTTGGAGCAGAACCGATTGTCTCAGAGAGTGTTAA 1015
Query 1018 AGAATTGGGGAATGAAATTGGAGCTGATTCGTGCGGAGATTGACGCTGCAAACATGAAGG 1077
|||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1016 AGAATTGGGGGATGAAGTTGGAGCTGATTCGTGCGGAGATTGATGCTGCTAACATGAAGG 1075
Query 1078 TTGCTTTGGGTAAATACGAGGAAGCGATTGAAATATTGAAGAGCGTTGTTCAACAAACCG 1137
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1076 TTGCTTTGGGTAAATACGAGGAAGCGATTGATATATTGAAGAGCGTTGTTCAACAAACTG 1135
Query 1138 AGAAGGACAGTGAGATGAGAGCTATGGTGTTTATATCAATGTCGAAAGCTTTGGTAAACC 1197
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 ACAAGGACAGTGAGATGAGAGCTATGGTGTTTATATCAATGTCGAAAGCTTTGGTAAACC 1195
Query 1198 AACAGAAGTTTGCTGATTCGAAGAAATGTTTGGAGTTTGCTTGTGAAATTCTTGAGAAGA 1257
|||||||||||||||| || |||| |||||||||||||||||||||||| || ||||| |
Sbjct 1196 AACAGAAGTTTGCTGAATCAAAGAGATGTTTGGAGTTTGCTTGTGAAATCCTCGAGAAAA 1255
Query 1258 AAGAAACAGCTTCGCCTGTAGAAGTCGCTGAAGCATACTCTGAGGTAGCAATGCAGTACG 1317
|||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 AAGAAACAGCTTTGCCAGTTGAAGTCGCTGAAGCATACTCTGAGGTAGCAATGCAGTACG 1315
Query 1318 AGTCAATGAACGAATTTGAAACCGCTATTTCGTTGTTGCAAAAAACTTTGAG-TATACTA 1376
||||||||||||||||||||||||| || || || ||||| |||||||| || |||||||
Sbjct 1316 AGTCAATGAACGAATTTGAAACCGCCATCTCTTTATTGCAGAAAACTTT-AGGTATACTA 1374
Query 1377 GAGAAGCTTCCTCAAGAACAGCACTCAGAAGGAAGTGTTTCTGCTAGGATAGGTTGGTTG 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 GAGAAGCTTCCTCAAGAACAGCACTCAGAAGGAAGTGTTTCTGCTAGGATAGGTTGGTTG 1434
Query 1437 CTTCTGTTCTCCGGTCGAGTCTCTCAAGCGGTTCCTTACTTGGAAAGTGCAGCCGAGAGG 1496
||||| ||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1435 CTTCTATTCTCAGGCCGAGTCTCACAAGCGGTTCCTTACTTGGAAAGTGCAGCCGAGAGG 1494
Query 1497 TTAAAAGAAAGTTTTGGTGCTAAACATTTTGGAGTTGGATATGTATATAACAATCTCGGT 1556
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 TTAAAAGAAAGCTTTGGTGCTAAACATTTTGGAGTTGGATATGTATATAACAATCTCGGT 1554
Query 1557 GCTGCTTATTTAGAGCTCGGAAGACCTCAATCCGCTGCTCAAATGTTTGCAGTTGCTAAA 1616
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 GCTGCTTATTTAGAACTCGGAAGACCTCAATCCGCTGCTCAAATGTTTGCAGTTGCTAAA 1614
Query 1617 GACATTATGGATGTTTCACTCGGTCCAAACCATGTGGATTCAATTGACGCTTGTCAGAAT 1676
|||||||||||||||||||| |||||||||||||||||||| || || ||||| ||||||
Sbjct 1615 GACATTATGGATGTTTCACTTGGTCCAAACCATGTGGATTCCATCGATGCTTGCCAGAAT 1674
Query 1677 CTTTCGAAAGCTTACGCTGGAATGGGAAATTATAGCCTCGCAGTGGAATTTCAACAGCGA 1736
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 CTTTCTAAAGCTTACGCTGGAATGGGAAATTATAGCCTCGCAGTGGAATTTCAACAGCGA 1734
Query 1737 GTGATCGATGCTTGGGACAATCATGGAGATAGCGCGAAAGACGAAATGAAAGAAGCAAAA 1796
|| ||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1735 GTAATCAATGCTTGGGATAATCATGGAGATAGCGCGAAAGACGAAATGAAAGAAGCGAAA 1794
Query 1797 AGACTTCTTGAGGATTTGCGATTGAAGGCTCGAGGAGGCGTATCAACAAATAAGCTTCTG 1856
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1795 AGACTTCTTGAGGATTTGCGATTGAAGGCTCGAGGAGGTGTATCAACGAATAAGCTTCTG 1854
Query 1857 AATAAGGCTTTACCTTTGCCCAAGACAAGCTATTGAT---AGTGGGCTTTGTGAAGTCTC 1913
|||||||||||||||||||||||| ||||| ||| || |||| |||||||||||||||
Sbjct 1855 AATAAGGCTTTACCTTTGCCCAAGCCAAGCCATTCATCTTAGTGAGCTTTGTGAAGTCTC 1914
Query 1914 AGCACCAAAGAAGAAGCAATGaaaaaaaTGGTGAGATTTAATGT-----CTTTTACATAT 1968
||| |||||||| ||||||||| ||| |||||||||||||| ||||| || ||
Sbjct 1915 AGCCCCAAAGAA----CAATGAAAAGAATAGTGAGATTTAATGTTTTTTCTTTT-CAAAT 1969
Query 1969 GATCATCGTATACTAAACTTTTGTTTTGCCTCTGAATAATTAAGTTATTCTCGAAATAAT 2028
|||| |||||||||||||| |||||||||| |||||| || |||||||||||||||||||
Sbjct 1970 GATCGTCGTATACTAAACTCTTGTTTTGCCACTGAATTATGAAGTTATTCTCGAAATAAT 2029
Query 2029 GTGTTTAGCTACTTCGATCATT 2050
|||||||||||||||||||||
Sbjct 2030 TTGTTTAGCTACTTCGATCATT 2051
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101605903080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5