BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482053
Length=1827
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31270.1 | Symbols: ATCDT1A, CDT1A, CDT1 | homolog of yeast ... 2662 0.0
> AT2G31270.1 | Symbols: ATCDT1A, CDT1A, CDT1 | homolog of yeast
CDT1 A | chr2:13329009-13331830 FORWARD LENGTH=2030
Length=2030
Score = 2662 bits (1441), Expect = 0.0
Identities = 1672/1781 (94%), Gaps = 25/1781 (1%)
Strand=Plus/Plus
Query 1 TGACACTCTATAGACATTGTTGA-AAAAATGAGTGCACCAGGTTCTTCTAGATCTATTCC 59
||||||||||||||||||||||| |||||||||| ||||||| ||||||||||| |||||
Sbjct 1 TGACACTCTATAGACATTGTTGATAAAAATGAGTACACCAGGCTCTTCTAGATCCATTCC 60
Query 60 ATTCAAATCGAAGAAACGGTTAGTGATGGATTCGCCGTCTTCAAAATCTCAAACCGGGAA 119
|||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 61 ATTCAAATCGAAGAAACGATTGGTGATGGATTCGCCGTCTTCGAAATCTCAAACCGGGAA 120
Query 120 TCCAAATCCGTCTTCTGTAGCTTTACCTACGCCGGAGAAGCCGCTTGAGAACATGCTTAG 179
||||||||||||||||||||| || ||||||||||| || || |||||||||||||||||
Sbjct 121 TCCAAATCCGTCTTCTGTAGCATTGCCTACGCCGGAAAAACCACTTGAGAACATGCTTAG 180
Query 180 TAGATCTAGAAACCGATCTGTGGCTTTATCAGTGAAAGAGATTCGGCAAGCGGCTGGATC 239
|||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 181 TAGATCGAGAAACCGATCTGTGGCTTTATCAGTGAAAGAAATTCGTCAAGCCGCTGGATC 240
Query 240 TCGTCGTAGATCTGAAGATCCGGTTGCTTCATCTGCCAAAAGCAAGCTCtttttttCTCA 299
|||||| ||||||||||||||||||||||||||||||||||||| |||| |||| |
Sbjct 241 TCGTCGCAGATCTGAAGATCCGGTTGCTTCATCTGCCAAAAGCAGGCTC---TTTT-T-- 294
Query 300 CAACGATTCATCATCCTCTTCGCCTTCAAAACG-AATAAGCTCTAATAAAAATGCAGAGA 358
|||||||||||| ||||| ||||||||||| || ||||||||| |||||||||||||
Sbjct 295 ---CGATTCATCATCATCTTCTCCTTCAAAACGTAA-AAGCTCTAACAAAAATGCAGAGA 350
Query 359 AAGAGAAACTTCCGGAGAAGTACGAGAATCTGGGAAAGTTCTTTGAAGCATTGGATAATT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 AAGAGAAACTTCCGGAGAAGTACGAGAATCTGGGAAAGTTCTTTGAAGCATTGGATAATT 410
Query 419 CGATCTCATTATCGAAATTAAGAGGTTCTAAACCAACATTTTCCAACATTTCTAAACAAA 478
|||| | ||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 411 CGATGTTGTTATCGAAATTAAGAGGTTCTAAGCCAACATTCTCCAACATTTCTAAACAAA 470
Query 479 TCGAGCATTTAACCGAGAGGAGGTTTTGTTATAGTCACTTGGCTCAAATAAAGCATATAT 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 TCGAGCATTTAACCGAGAGGAGGTTTTGTTATAGTCACTTGGCTCAAATAAAGCATATAT 530
Query 539 TGCGAGAAGCCATCGAGATTAAGAGAGTATTGATACATGATGAAAGAACTTGCTGTATGA 598
||| ||||| || ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 531 TGCCTGAAGCGATTGAGATTAAGAGAGTATTGATACATGATGAAACTACTTGCTGTATGA 590
Query 599 AACCGGACCTTCATATTACCCTCAATGCCGATGCTGTTGAATACAAAGACAAGTCGAAAT 658
|||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 591 AACCGGACCTTCATGTTACGCTCAATGCCGATGCTGTTGAATACAACGACAAGTCGAAAT 650
Query 659 CCGAAAGTAAGAAAATCGCTCTTCGGAAAGTGTTTCGGGCTAGACTGGCAGAGTTTGTTA 718
| |||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 651 CGGAAAGTAAGAAAATCGCTCTTCGGAAAGTGTTTCGGGCTAGACTTGCGGATTTTGTTA 710
Query 719 AAGCTCACCCTCAGGGTGATGAAGTTCCAGAGGAACCGCTTCCTGAGCCATTCAATAGGA 778
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 711 AAGCTCACCCTCAGGGTGATGAAGTTCCAGAGGAACCGCTTCCTGAGCCCTTCAATAGAA 770
Query 779 GGAAACCAGATGAAAACTCAAAAT-TTGAGGTCAAGAATGTTAGTTCTCTCATGGAAGAG 837
||||||||| |||||||||||| | |||| |||||| ||||||||||||||||||||||
Sbjct 771 GGAAACCAGTTGAAAACTCAAA-TGTTGAAGTCAAGCGTGTTAGTTCTCTCATGGAAGAG 829
Query 838 ATGGCTTCTATTCCAGCAGCTAAATTGTTTTCATCTCCCATCACATCAACTCCAGTCAAA 897
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 830 ATGGCTTCTATTCCAGCATCTAAATTGTTTTCATCTCCCATCACATCAACGCCAGTCAAA 889
Query 898 ACAAGTTCAAGTCCGGCCAAACCAACTTCGTCTCAGATTAACATTGCACCAACTCCAATC 957
|||| |||||||| ||| ||||||||||||||||||||||||||||| |||||||||| |
Sbjct 890 ACAACTTCAAGTCTGGCTAAACCAACTTCGTCTCAGATTAACATTGCTCCAACTCCAACC 949
Query 958 AAACCAACTTCAACTCCTGCTAAACCGACTTCGTCTGAGATTGACAT-TGTGCCAACTCC 1016
||||||||||||||||||||||||| ||||| |||||||||| | || | ||||||||||
Sbjct 950 AAACCAACTTCAACTCCTGCTAAACAGACTTTGTCTGAGATTAATATAT-TGCCAACTCC 1008
Query 1017 AGTCAAACTAGTGTCAACTCTGGCTAAAATTCCTTCAACACCGGCTATAATTGACTCAAC 1076
|||||||| |||||||||||||||||| |||||||||||||||| || |||||||||||
Sbjct 1009 AGTCAAACCAGTGTCAACTCTGGCTAAGTTTCCTTCAACACCGGCGATTATTGACTCAAC 1068
Query 1077 ACCAGTCATTGCTGCTTCAACTCCACCTGAATTTGCTTCAACTCCTGCCCGGCTCTTGAG 1136
|||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1069 ACCAGTCATTACTGC---AACTCCACCTGAATTTGCTTCAACTCCTGCCCGGCTGATGAG 1125
Query 1137 TACGTCTCTGGCAGCTCGTCCGCTCAAAAGAAGCAGCGGTCATTCAAATCCAGATGATAT 1196
||| |||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||
Sbjct 1126 TACTTCTCTGGCAGCTCGTCCGCTGAAAAGAAGCAACGGTCATACAAATCCAGATGATAT 1185
Query 1197 TTCTGCTGACCCACCAACTAAGCTCGTGAGGCGTTCCTTGTCTCTGAACTTTGATTCTTA 1256
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 TTCTGCTGACCCACCGACTAAGCTCGTGAGGCGTTCCTTGTCTCTGAACTTTGATTCTTA 1245
Query 1257 TCCTGAGGATGAGA-AAGCTATGGATTTCACAGATGATGA-ACCCATTGATCAAGTACCA 1314
|||||||||||||| || |||||||||||||||||||| | |||||||||||||||||||
Sbjct 1246 TCCTGAGGATGAGAGAA-CTATGGATTTCACAGATGAT-ATACCCATTGATCAAGTACCA 1303
Query 1315 GAAGAAGAAT-TATCTAGCGATGATGAAATCCTCAGCATACTTCCTGATAAACTTCGACA 1373
|||||||| | |||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1304 GAAGAAGA-TGTATCCAGCGATGATGAAATACTCAGCATACTTCCTGATAAACTTCGACA 1362
Query 1374 TGCGATAAAAGAACAAGAGAGGAAAGCGATTGAGGATCAAAACCCAGCAATCTCTCTGGC 1433
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1363 TGCGATAAAAGAACAAGAGAGGAAAGCGATTGAGGATCAAAATCCAGCAATCTCTCTGGC 1422
Query 1434 AAAAAGAAGGCGAAAGATGATCGCTTGTCTACCCAAACTTTTCAATGTCATCCATTACTT 1493
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1423 AAAAAGAAGGCGAAAGATGATCGCTTGTCTACCTAAACTTTTCAATGTCATCCATTACTT 1482
Query 1494 AATTCAATCGATAAGGCGTTGGGTAATCACAAAAGAAGAGCTTGTGCACAAGATCATCGC 1553
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1483 AATTCAATCGATAAGGCGTTGGGTTATCACAAAAGAAGAGCTTGTGCACAAGATCATTGC 1542
Query 1554 TGGCCATTCTGATATTACTGACAGAAAGGAAGTTGAAGAACAACTTATCTTACTGCAAGA 1613
|| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1543 CGGTCACTCTGATATTACTGACAGAAAGGAAGTTGAAGAACAACTAATCTTACTGCAAGA 1602
Query 1614 ACTTGTCCCTGAATGGATGTCTGAGAAAAAATCATCAAGTGGAGATGTACTAGTATGCAT 1673
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1603 AATTGTCCCTGAATGGATGTCTGAGAAAAAATCATCAAGTGGAGATGTTCTAGTATGCAT 1662
Query 1674 AAACAAATTGGCATCTCCCCTAACAATCCGATCACGTCTTGAAGAAGAAAACAAGCAAGA 1733
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1663 AAACAAGTTGGCATCTCCTCTAACAATCCGATCACGTCTTGAAGAAGAAAACAAGCAAGA 1722
Query 1734 GATGGCTCCACTGCTTTCTTGAGGTCTTGGTTCCATCGGCT 1774
||||||||||||||||||||||| || ||||||||||||||
Sbjct 1723 GATGGCTCCACTGCTTTCTTGAGATCGTGGTTCCATCGGCT 1763
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90411181545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5