BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482061
Length=2138
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31340.1 | Symbols: emb1381 | embryo defective 1381 | chr2:1... 3454 0.0
> AT2G31340.1 | Symbols: emb1381 | embryo defective 1381 | chr2:13361506-13365200
FORWARD LENGTH=2140
Length=2140
Score = 3454 bits (1870), Expect = 0.0
Identities = 2054/2143 (96%), Gaps = 11/2143 (1%)
Strand=Plus/Plus
Query 1 AACGCTTAAACCCTCCAATGGTTTT-GATTCAACATTTCCCCTGAGATTTGGGAGTGTCC 59
|||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||
Sbjct 2 AACGCTTAAACCCTCC-ATGGTTTTGGATTGAACATTTCCCCTGAGATTTGGGAGTGTCC 60
Query 60 TTAAA-CCCATACACTGATCGAGCTCAAGAAGAAGGTGGAGAAGCAGAGAGATGGTGAAT 118
||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 61 TTAAACCCCATACACTGATCGAGCTCAAGAAGAA---GGAGAAGCAGAGAAATGGTGAAT 117
Query 119 AAACCTTGGAAGATAATTCCAAGGCCACTTCTAGAAACAGTACTCAACAACCATGTCCAA 178
|||| ||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||
Sbjct 118 AAACATTGGAAGATAATTCCAAAGCCGCTTCTAGAAACAGTTCTCAACAACCATGTCCAA 177
Query 179 CGCCACCGTGTTCCTCAGCCTCTCATCCTCCATGGTCCTCGTGGCGTCGGCAAAACCAC- 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CGCCACCGTGTTCCTCAGCCTCTCATCCTCCATGGTCCTCGTGGCGTCGGCAAAACCACA 237
Query 238 TCTCATTCTCAACCGTCTACTCGGAGATTGGAACAAAGGGCCACATCTCGCTGGCTATGT 297
| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 T-TGATCCTCAACCGTCTACTCGGAGATTGGAACAAAGGGCCACATCTCGCTGGCTATGT 296
Query 298 AGATTTTGCGCAATCGATAACGGAACACCACCCAGATCACCAACAATCATATCCATGGAC 357
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 297 AGATTTTGCGCAATCGATAACGGAACACCATCCAGATCACCACCAATCATATCCATGGAC 356
Query 358 GTCTTGGACTAGTGTTGACCCACCATTGTTGTCGAATTGCAAAACCCAGCTCGAGAATTG 417
||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 357 GTCTTGGACCAGTGTTGACCCACCGTTGTTGTCCAATTGCAAAACCCAGCTCGAGAATTG 416
Query 418 TCTTGAATCTATGAGTCACAAAGCTATCAAACTTGGGAGTTTAAGCTCGCAGCAGATTTT 477
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 417 TCTTGAATCTATGAGTCACAAAGCTATCAAACTTGGGAGTATAAGCTCGCAGCAGATTTT 476
Query 478 CACTACTATGAACAAATGGTATGGTCTTAATACTGCACTTCGTCGTATACTTCAGGGGTA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 477 CACTACTATGAACAAATGGTATGGTCTTAATACTGCACTTCGTCGTATACTTCAGGGTTA 536
Query 538 TAACATTGCCGTTCCAGAGAAAGTCTCCGTTTCATTTCTCTGGGAACGGGCAGTGTATGC 597
||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 537 TAACATTGCTGTTCCAGAGAAAGTCTCGGTTTCATTTCTCTGGGAACGGGCTGTGTATGC 596
Query 598 GCTATCTGTTCGACAAAATGCCGATGAGATTGATGGGTTGCTTGAATTGGAAGAGAAAGG 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CCTATCTGTTCGACAAAATGCCGATGAGATTGATGGGTTGCTTGAATTGGAAGAGAAAGG 656
Query 658 TAATAGCTTGTCTGTAGAAGAGGCGTCGTACTATAGAGAGACCGCTTTTGCGTTAAGATT 717
|||||||||||| || |||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 657 TAATAGCTTGTCCGTTGAAGAGGCTTCGTATTATAGAGAGACTGCTTTTGCGTTAAGATT 716
Query 718 GGCTAAAGAGGTAATAAAGGTGCACCAGGGTTGGAAAGCCAATGCCATTGCTCATCTTAA 777
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GGCTAAAGAGGTTATTAAGGTGCACCAGGGTTGGAAAGCCAATGCCATTGCTCATCTTAA 776
Query 778 TCGAACTAATGGGTTTTCGAGAACATTAGCGAATTCTTGTACTGATTGGCCGTTGCTAAT 837
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 777 TCGAACTAATGGGTTTTCGAGAACTTTAGCGAATTCATGTACTGATTGGCCGTTGCTAAT 836
Query 838 GCTTGAGTTGTTATCACAAGCTGCAGAGATTGGTTTCTTCCAGCCTAAGCTGGTCTTAAA 897
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 837 GCTTGAGTTGTTATCACAAGCTGCAGAGATTGGCTTCTTCCAGCCTAAGCTGGTCTTGAA 896
Query 898 CAACATTGAAATCTTGAAGAGGGCTATTCAGACTGATGATTCAACTGTCTCAGCGTCAAT 957
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 897 CAACATTGAAATCTTGAAGAGGGCTATTCAGACTGATGATTCAACAGTCTCAGCGTCAAT 956
Query 958 GTACCATGACAATCTTATATGGAGAATAATAGCTTTAAGTGCGAATGAGCGCTGTCTACC 1017
|||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||
Sbjct 957 GTACCATGACAATCTTATTTGGAGAATAATAGCGTTAGGTGCGAATGAGCGCTGTCTACC 1016
Query 1018 TGTCCTATTCGTGACTTCAGACAGCTATTACTCATATCAAGCCTTTGTTGACTACGGGTT 1077
|||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||
Sbjct 1017 TGTCCTATTCGTGACTTCGGACAGCTACTATTCATATCAAGCCTTTGTTGACTACGGGTT 1076
Query 1078 TCCAGACATTTTCATCTCTCGTGAGACATTTGGATGGAATCCTCAAGAAGCAAAATTACA 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TCCAGACATTTTCATCTCTCGTGAGACATTTGGATGGAATCCTCAAGAAGCAAAATTACA 1136
Query 1138 CATGGTTCCTGATTACTTCAGTGCTTCGGAGTGGACTATCATTGCTGATGTTCTTGGTGC 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 CATGGTTCCTGATTACTTCAGTGCTTCGGAGTGGACTATCATTGCTGATGTTCTTGGTGC 1196
Query 1198 CAATTCTCGGCATCTATTCGAGCTTTATGCGCTTAAACAAAGTAATCATTACCAGAGTTT 1257
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 GAATTCTCGGCATCTATTTGAGCTTTATGCGCTTAAACAAAGTAATCATTACCAGAGTTT 1256
Query 1258 GATGGGGAGTAAAGCAGGTACGTTTGAAGATATTGTGGATGCATACTTGGCATATTTACA 1317
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1257 GATGGGGAGTAAAGCAGGTACATTTGAAGATATTGTGGATGCATACTTGGCATATTTACA 1316
Query 1318 AGTTGCTGTGGTTAATCCTGCAATGGAAAAAGCTTTGTTGCGGCTTCAACGGTATGCTAC 1377
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 1317 AGTTGCTGTGGTTAATCCTGCAATGGACAAAGCGTTGTTGCGGCTTCAACGGTATGCCAC 1376
Query 1378 TGATGCACGGAAAGGAAGCATTCCGTATGAAAAATTACATTTTGGTGCTCCATGGAGGCA 1437
||||| ||| |||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1377 TGATGTACGAAAAGGAAGCATTCCGTATGAAAAATTACGTTTTGGTGCTTCATGGAGGCA 1436
Query 1438 TCCTCCGCAAACTGAGGATCCTACTCTTAACTCTGAGTGGGCTAAAATTCAGCTGATGGA 1497
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1437 TCCTCCGCAAACTGAGGATCCTACACAGAACTCTGAGTGGGCTAAAATTCAGCTGATGGA 1496
Query 1498 TTTTGTTCAAGCTCTTGTCAATACAGAATTCGCGGTAAATTATTTGGGTGACTATAGCCT 1557
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 TTTTGTCCAAGCTCTTGTCAATACAGAATTCGCGGTAAATTATTTGGGTGACTATAGCCT 1556
Query 1558 TGAGATCTTTGAAGACCCTTCTGCTATGGCATTGGTTGAGGTTGGGATACTGTATACTCA 1617
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1557 TGAGATCTTTGAAGACCCTTCAGCTATGGCATTGGTTGAGGTTGGGATACTGTATACTCA 1616
Query 1618 GCGAGATCCATCTTTTTTCCGGCCAATATCTCAAGGCATTAAAAGATGCCTTGTAAGATG 1677
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1617 GCGAGATCCATCTTTTTTCCGGCCAATATCTCAAGGCATTAAAAGATGCCTTGTTAGATG 1676
Query 1678 GCTCATCCAAGAGCGGATGCAAATGACTTACTGGAGCTCAACCAAATATTGGTGGCAAAG 1737
||||||||||||||||||||| |||| ||| ||||||||||| |||||||||||||| ||
Sbjct 1677 GCTCATCCAAGAGCGGATGCAGATGAGTTATTGGAGCTCAACAAAATATTGGTGGCAGAG 1736
Query 1738 AATCATCCGGGGTCGTTATTACAAGCATTTGATGCTTGGCTACAGAACATAGGCAGTTTC 1797
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1737 AATCATCCGGGGTCGTTATTACAAGCATTTAATGCTTGGCTACAGAACATAGGCAGTTTC 1796
Query 1798 ACACAGGTTTTGTTTTCACAGGAACGTTGATGAAATCTCGGTATCTCGTGCACGTAGACA 1857
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||
Sbjct 1797 ACACAGGTTTTGTTTTCACAGGAACGTCGATGAAATCTCGGTATCTTGTGCACGTACACA 1856
Query 1858 TGTCGGACTCATATTTTACCGTGAAGTAGGAAACATAAAGAGGCGTTGGTTTTATTGCCG 1917
||||||||||| |||||||||||||||| |||||||||| ||||||| |||| ||||||
Sbjct 1857 TGTCGGACTCAGGTTTTACCGTGAAGTAGAAAACATAAAGGGGCGTTGTTTTTGTTGCCG 1916
Query 1918 TCAATGTCTGCCTTTTAGTGAAATCGCATTAAGAAGAGAGGTCGGAGGGAAAAACCTCCA 1977
|||| ||||| |||||||| ||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1917 TCAAGGTCTGACTTTTAGTAAAATCACATTAAGAAGAGACGTCGGAGGGAAAAACCTCCA 1976
Query 1978 GCTACGGAACGGTGTAATCGTGTAAGTGGGAATACATTGCCATGAGAACGTCTTTTCTCT 2037
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1977 GCTACAGAACGGTGTAATCGTGTAAGTGGGAATACATTGCCATGAGAACGTCTTT-CTCT 2035
Query 2038 TCAGACGCTGTATATAAAGCGCATGTTGCTGTGTT-ATGT-GAtttttttCAGGTAAAAT 2095
||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||
Sbjct 2036 TCAGACGCTGTATATAAAGCGCATGTTGCTGTGTTTATGTCGATTTTTTTCAAGTAAAAT 2095
Query 2096 TATAAGTCAAATACTTGAATTATTCACTGTATTGTCTACCTTT 2138
||||||||||| | || ||||||||||||||||||||||||||
Sbjct 2096 TATAAGTCAAAGAATTCAATTATTCACTGTATTGTCTACCTTT 2138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106023551040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5