BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482064
Length=1302
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31360.1 | Symbols: ADS2, DS2 | 16:0delta9 desaturase 2 | ch... 1759 0.0
AT1G06080.1 | Symbols: ADS1 | delta 9 desaturase 1 | chr1:18435... 577 1e-163
> AT2G31360.1 | Symbols: ADS2, DS2 | 16:0delta9 desaturase 2 |
chr2:13371658-13373606 REVERSE LENGTH=1447
Length=1447
Score = 1759 bits (952), Expect = 0.0
Identities = 1118/1189 (94%), Gaps = 47/1189 (4%)
Strand=Plus/Plus
Query 1 TCCATTAAC---aaa-agagagagaacct---aa-aa-agaagagaaagagagaTCCGAA 51
||||||||| ||| ||||||||||||| || || ||||||||||||||||||||||
Sbjct 1 TCCATTAACAAAAAAGAGAGAGAGAACCTAAAAAGAAGAGAAGAGAAAGAGAGATCCGAA 60
Query 52 ATGTCGGTGACATCAACGGTGGAGGAGAACCACCAGAAAAATCCATCAACGCC-GC--C- 107
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 61 ATGTCGGTGACATCAACGGTGGAGGAGAACCACCAGAAAAATCCATCAACGCCGGCGGCG 120
Query 108 --GGAGGAGAAGAAGAAGAGGAGATGGGTGTTTTGGGATAGAAGGTGGAGGAGATTAGAT 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTGGAGGAGAAGAAGAAGAGGAGATGGGTGTTTTGGGATAGAAGGTGGAGGAGATTAGAT 180
Query 166 TATGTGAAATTCTCAGCTTCTTTCACTGTTCATTCTCTTGCTCTCTTGGCTCCGTTTTAT 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TATGTGAAATTCTCAGCTTCTTTCACTGTTCATTCTCTTGCTCTCTTGGCTCCGTTTTAT 240
Query 226 TTCACATGGTCGGCTCTTTGGGTTACGTTTTTGTTTTACACCATCGGTGGTCTTGGTATC 285
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTCACTTGGTCGGCTCTTTGGGTTACGTTTTTGTTTTACACCATCGGTGGTCTTGGTATC 300
Query 286 ACCGTCTCCTATCATCGGAACTTGGCTCACCGGAGTTTCAAAGTCCCTAAATGGCTTGAG 345
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACCGTCTCTTATCATCGCAACTTGGCTCACCGGAGTTTCAAAGTCCCTAAATGGCTTGAG 360
Query 346 TATCTCTTAGCCTATTGTGCCCTTCTCGCTATTCAGGGAGATCCGATTGATTGGGTGAGT 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TATCTCTTAGCCTATTGTGCCCTTCTCGCTATTCAGGGAGATCCGATTGATTGGGTGAGT 420
Query 406 ACTCATCGTTATCATCACCAGTTCACGGATTCAGAACGTGATCCACATAGTCCCAAGGAA 465
|| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 ACACATCGTTACCATCACCAGTTCACGGATTCAGAACGTGATCCACATAGTCCTAAGGAA 480
Query 466 GGTTTTTGGTTTAGTCATCTTCTTTGGATCTATGACTCTGCCTATCTTG-TTCAAAAGTG 524
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 481 GGTTTTTGGTTTAGTCATCTTCTTTGGATCTATGACTCTGCCTATCTTGTTTC-AAAGTG 539
Query 525 TGGAAGAAGAGCAAATGTGGAGGATTTGAAGAGGCAATGGTTTTACCGGTTTCTTCAGAA 584
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 540 TGGAAGAAGAGCAAACGTGGAGGATTTGAAGAGGCAATGGTTTTATAGGTTTCTTCAGAA 599
Query 585 AACAGTGCTATTTCACATTTTAGGATTGGGCTTCATTCTCTTCTATCTTGGTGGCATGTC 644
|||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||
Sbjct 600 AACAGTGCTATTTCACATTTTAGGATTGGGTTTCTTTCTCTTCTACCTTGGTGGCATGTC 659
Query 645 CTTCGTTACTTGGGGAATGGGGGTAGGAGCAGCGTTGGAAGTGCACGTGACTTGCCTCAT 704
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 660 CTTCGTTACTTGGGGAATGGGGGTAGGAGCAGCATTGGAAGTGCACGTGACTTGCCTCAT 719
Query 705 AAACTCACTCTGCCATATTTGGGGCACTCGAACTTGGAAGACCAATGACACTTCTCGTAA 764
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AAATTCACTCTGCCATATTTGGGGCACTCGAACTTGGAAGACCAATGACACTTCTCGTAA 779
Query 765 TGTTTGGTGGTTATCGGTATTTTCATTTGGAGAGAGTTGGCACAACAATCATCATGCGTT 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGTTTGGTGGTTATCGGTATTTTCATTTGGAGAGAGTTGGCACAACAATCATCATGCGTT 839
Query 825 CGAGTCATCGGCTAGACAAGGACTTGAATGGTGGCAAATCGACATTTCGTGGTACATTGT 884
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 840 CGAGTCATCGGCTAGACAAGGACTTGAATGGTGGCAAATAGACATTTCGTGGTACATTGT 899
Query 885 TCGGTTTTTCGAGATTATCGGTTTAGCGACCGATGTGAAGGTGCCTACGGAGGCTCAACG 944
|||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 900 TCGGTTTTTCGAAATTATCGGTTTAGCGACCGATGTGAAAGTGCCAACGGAGGCTCAACG 959
Query 945 ACGTCGTATGGCTATCGTTCGTTGATGG------C---A------TAGAAAAAGGGATCT 989
||||||||||||||| |||||||||||| | | |||||||||||||||
Sbjct 960 ACGTCGTATGGCTATAGTTCGTTGATGGAAATTGCGGGAAGAGCATAGAAAAAGGGATCT 1019
Query 990 ATTCTATGTAATTAGAATAATTTCTAATCCTAAAAGAGTTATTATTATTGtttttttttc 1049
|||||||||||||||||||||||||||||||||||||| | | | |||||||| |||||
Sbjct 1020 ATTCTATGTAATTAGAATAATTTCTAATCCTAAAAGAG--AGT-T-ATTGTTTTATTTTC 1075
Query 1050 ttttcttctttattattattacttttgaagttttGGGTTAACGCAAAGGACGTTTCCGAT 1109
||| |||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1076 TTT--------ATTACTA---CTTTTGAAGTTTTGGGTTAACGCAAAGGACGTTTCCGAT 1124
Query 1110 GTGTTTTGGCGTTGGACCAAGTTGATCAAGATATTTGTCGTAATTGGTA 1158
||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1125 GTGTTTTGGTGTTGGACCAAGTTGATTAAGATATTTGTCGTAATTGGTA 1173
Score = 178 bits (96), Expect = 1e-43
Identities = 115/123 (93%), Gaps = 6/123 (5%)
Strand=Plus/Plus
Query 1186 CTAAAATATCTAATCGTCGTTTACG--AAAAGAAGAAAAGCAAAAAGACATAAGACTTGT 1243
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1256 CTAAAATATCTAATCGTCGTTTACGATAAAAGAAGAAAAGCAAAAAGACATAAGACTTGT 1315
Query 1244 TCAAAAGGAGA-GATA-T-ATTGGTTGTTGGAGTTTATAGCCACATATAAA-TTACCCTT 1299
||||||||||| |||| | ||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1316 TCAAAAGGAGATGATATTGGTTGGTTGTTGGAGTTTATAGCCACATATAAAATTACCTTT 1375
Query 1300 TTT 1302
|||
Sbjct 1376 TTT 1378
> AT1G06080.1 | Symbols: ADS1 | delta 9 desaturase 1 | chr1:1843568-1846302
FORWARD LENGTH=1220
Length=1220
Score = 577 bits (312), Expect = 1e-163
Identities = 678/851 (80%), Gaps = 40/851 (5%)
Strand=Plus/Plus
Query 139 TGGGATAGAAGGTGGAGGAGATTAGATTA-TGTGAAATTC-TCAGCTTCTTTCACTGTTC 196
||||| |||| ||||| |||||| || | ||||||| | | || ||| || ||| |
Sbjct 181 TGGGAAAGAAAGTGGAAGAGATTGGA-CATTGTGAAA-GCTTTTGCATCTCTCTTTGTCC 238
Query 197 A-TT-CTCTTGCTCTCTTGGCTCCGTTT-TATTTCACATGGTCGGCTCTT-TGGGT-TAC 251
| || ||| || ||||||||| || ||| ||||||| ||| ||||| || | || |
Sbjct 239 ATTTCCTC-TG-TCTCTTGGCGCC-TTTCAATTTCACTTGGCCGGCT-TTAAGAGTCGCC 294
Query 252 GTTTTTGTTTTACACCATCGGTGGTCTTGGTATCACCGTCTCCTATCATCGGAACTTGGC 311
| ||| | || || | ||||| || |||||||||||||| || || || || |||||
Sbjct 295 CTCATTG-TCTATACGGTGGGTGGGCTCGGTATCACCGTCTCTTACCACCGAAATTTGGC 353
Query 312 TCACCGGAGTTTCAAAGTCCCTAAATGGCTTGAGTATCTCTTAGCCTATTGTGCCCTTCT 371
||||||||| |||||||||||||||||||| |||||| |||| || ||||| | ||||||
Sbjct 354 TCACCGGAGCTTCAAAGTCCCTAAATGGCTCGAGTATTTCTTCGCTTATTGCGGCCTTCT 413
Query 372 CGCTATTCAGGGAGATCCGATTGATTGGGTGAGTACTCATCGTTATCATCACCAGTTCAC 431
|| ||||||||||||||||||||||||||||| || ||||| || ||||||||||| ||
Sbjct 414 TGCCATTCAGGGAGATCCGATTGATTGGGTGAGCACACATCGATACCATCACCAGTTTAC 473
Query 432 GGATTCAGA-ACGTGATCCACATAGTCCCAAGGAAGGTTTTTGGTTTAGTCATCTTCTTT 490
||||| || | | || ||||||||||| || ||||| |||||||| ||||| || || |
Sbjct 474 AGATTCGGATAGG-GACCCACATAGTCCTAACGAAGGATTTTGGTTCAGTCACCTCCTAT 532
Query 491 GGATCTATGACT-CTGCCTATCTTGTTCAAAAGTGTGGAAGAAG-AGCAAATGTGGAGGA 548
|| | | ||| | | | |||||||| |||||||||||||||| | |||||||||||||
Sbjct 533 GGCTATTTGA-TACCGGTTATCTTGTAGAAAAGTGTGGAAGAAGGA-CAAATGTGGAGGA 590
Query 549 TTTGAAGAGGCAATGGTTTTACCGGTTTCTTCAGAA-AACAGTGCTATTTC-ACATTTTA 606
|| |||||||| |||| || || || || || |||||| || || | ||||| ||
Sbjct 591 CTTAAAGAGGCAGTGGTACTATAAATTCCTCCA-AAGAACAGTCCT-TTACCACATTCTA 648
Query 607 GGATTGGGCTTCATTCTCT-TCTATCTT-GGTGGCATGTCCTT-CGTTACTTGGGGAATG 663
||| || ||| | |||| | || ||| ||||| |||| || | ||||||||||||||
Sbjct 649 ACATTTGGTTTCCTCCTCTAT-TA-CTTTGGTGGTTTGTCTTTTC-TTACTTGGGGAATG 705
Query 664 GGGGTAGGAGCAGCGTTGGA--AGTGCACGTGACTTGCCTCATAAACTCACTCTGCCATA 721
|| | || | ||| |||| | | || |||||||||||||||||||| || ||||||
Sbjct 706 GGTATTGGGGTAGCAATGGAGCA-T-CATGTGACTTGCCTCATAAACTCTCTTTGCCATG 763
Query 722 TTTGGGGCA-CTCGAACTTGGAAGACCAATGACACTTCTCGTAATGTTTGGTGGTTATCG 780
||||||| | | |||||||||||||| ||||||||||| ||||| ||||||||| ||||
Sbjct 764 TTTGGGGAAGC-CGAACTTGGAAGACTAATGACACTTCCCGTAACGTTTGGTGGCTATCA 822
Query 781 GTATTTTCATTTGGAGAGAGTTGGCACAACAATCATCATGCGTTCGAGTCATCGGCTAGA 840
||||| || ||||||||||| |||||||||||||| || || ||||| || ||||| |||
Sbjct 823 GTATTCTCGTTTGGAGAGAGCTGGCACAACAATCACCACGCCTTCGAATCCTCGGCGAGA 882
Query 841 CAAGGACTT-GAATGGTGGCAAATCGACATTTCGTGGTACATTGTTCGGTTTTTCGAGAT 899
||||| ||| ||||||||||||||||||||||| ||||| ||||| || ||| |||||||
Sbjct 883 CAAGG-CTTAGAATGGTGGCAAATCGACATTTCTTGGTATATTGTCCGCTTTCTCGAGAT 941
Query 900 TATCGGTTTAGCGACCGATGTGAAGGTGCCTACGGAG-GCTCAACGACGTCGTATGGCTA 958
||||||||| || || ||||| ||| ||||| | ||| | |||||| ||||||||||| |
Sbjct 942 TATCGGTTTGGCTACTGATGTTAAGTTGCCTTCCGAGAG-TCAACGTCGTCGTATGGCAA 1000
Query 959 TCGTTCGTTGA 969
| |||||||||
Sbjct 1001 TGGTTCGTTGA 1011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64055895420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5