BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482066
Length=1631
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31370.3 | Symbols: | Basic-leucine zipper (bZIP) transcrip... 1884 0.0
> AT2G31370.3 | Symbols: | Basic-leucine zipper (bZIP) transcription
factor family protein | chr2:13379037-13381485 FORWARD
LENGTH=1740
Length=1740
Score = 1884 bits (1020), Expect = 0.0
Identities = 1190/1266 (94%), Gaps = 36/1266 (3%)
Strand=Plus/Plus
Query 145 TGATTCAGATCT-TTTGCAGGATTGTTGATTTGTTGATAAGTCAGTAGAAATGGATAAGG 203
||||| |||||| ||| | || | ||||||||| ||||||||||||||||||||||||||
Sbjct 200 TGATTTAGATCTATTT-C-GG-TCGTTGATTTGGTGATAAGTCAGTAGAAATGGATAAGG 256
Query 204 AGAAATCTCCGGCACCTCCTTGTGGAGGTCTTCCTCCTCCATCTCCATCAGGTCGATGCT 263
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 AGAAATCTCCAGCACCTCCTTGTGGAGGTCTTCCTCCTCCATCTCCATCAGGTCGATGCT 316
Query 264 CTGCATTCTCAGAAGCTGGTCCCATTGGTCATGGATCAGATGCTAATCGAATGAGTCATG 323
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 317 CTGCATTCTCAGAAGCTGGTCCCATTGGTCATGGTTCAGATGCTAATCGAATGAGTCATG 376
Query 324 ATATGAGCCGTATGCTCGATAACCCACCGAAGAAGATTGGACATCGTCGAGCTCATTCTG 383
|||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 377 ATATTAGCCGTATGCTTGATAACCCACCTAAGAAGATTGGACATCGGCGAGCTCATTCTG 436
Query 384 AAATCCTTACTCTTCCTGATGATTTGAGCTTTGATAGTGATCTTGGTGTTGTTGGTAATG 443
|||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 437 AAATACTTACTCTCCCTGATGATTTGAGCTTTGATAGTGATCTTGGTGTGGTTGGTAATG 496
Query 444 CTGCTGATGGAGCTTCTTTCTCTGATGAGACTGAAGAAGACTTGCTCTCTATGTATCTTG 503
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 497 CTGCTGATGGAGCTTCTTTCTCTGATGAGACTGAAGAAGATTTGCTCTCTATGTATCTTG 556
Query 504 ATATGGATAAGTTTAATTCTTCTGCTACATCTTCTGCTCAAGTTGGTGAGCCATCTGGAA 563
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 557 ATATGGATAAGTTTAATTCTTCTGCTACATCTTCTGCCCAAGTTGGTGAGCCATCAGGAA 616
Query 564 CTGCTTGGAAAAATGAGTCAATGATGCAGACA-G---A--CTCAACTTCCAATCCTCAGA 617
||||||||||||||||| |||||||||||||| | | ||||||||||||||||||||
Sbjct 617 CTGCTTGGAAAAATGAGACAATGATGCAGACAGGCACAGGCTCAACTTCCAATCCTCAGA 676
Query 618 ATACGCTTAATAGTTTTGGCGAAAGACCAAGAATCAGGCATCAACATAGCCAATCTATGG 677
||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 677 ATACGGTTAATAGTCTTGGCGAAAGGCCAAGAATCAGGCATCAACATAGCCAATCTATGG 736
Query 678 ATGGTTCAATGAATATCAATGAGATGCTTATGTCCGGG-AATGAAGATGATTCTGCTATT 736
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 737 ATGGTTCAATGAATATCAATGAGATGCTTATGT-CGGGAAATGAAGATGATTCTGCTATT 795
Query 737 GATGCTAAGAAGTCCATGTCTGCTACTAAACTTGCTGAGCTTGCTCTCATCGATCCTAAA 796
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 796 GATGCTAAGAAGTCTATGTCTGCTACTAAACTTGCTGAGCTTGCTCTCATTGATCCTAAA 855
Query 797 CGTGCTAAGAGGATATGGGCAAACAGGCAGTCCGCAGCAAGATCAAAAGAAAGGAAGACG 856
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 856 CGTGCTAAGAGGATATGGGCAAACAGGCAGTCCGCAGCACGATCAAAAGAAAGGAAGACG 915
Query 857 AGATACATATTTGAGCTTGAGAGGAAAGTACAGACTTTACAAACAGAGGCTACAACTCTC 916
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 916 AGATACATATTTGAGCTTGAGAGAAAAGTACAGACTTTGCAAACAGAGGCTACAACTCTC 975
Query 917 TCAGCCCAGCTGACTCTCTTACAGAGAGACACAAATGGCTTGACTGTTGAAAACAATGAG 976
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 TCAGCCCAGTTGACCCTCTTACAGAGAGACACAAATGGCTTGACTGTTGAAAACAATGAG 1035
Query 977 CTGAAGCTGCGGTTACAAACAATGGAGCAGCAGGTTCACTTGCAGGATGAACTAAACGAA 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 CTGAAGCTGCGGTTACAAACAATGGAGCAGCAGGTTCACTTGCAGGATGAACTAAACGAA 1095
Query 1037 GCGCTTAAGGAGGAAATCCAGCACCTGAAGGTGTTAACTGGCCAAGTTGCTCCATCAACG 1096
|| || ||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||
Sbjct 1096 GCACTAAAGGAGGAAATCCAGCATCTGAAGGTGTTGACTGGCCAAGTTGCTCCATCAGCG 1155
Query 1097 CTGAACTATGGGTCCTTTGGATCAAACCAGCA--A-TTCTATTCCAACAATCAGTCAATG 1153
||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1156 TTGAACTATGGGTCGTTTGGATCAAACCAGCAGCAATTCTATTCCAACAATCAGTCAATG 1215
Query 1154 CAAACAATCTTAGCTGCAAAACAGTTCCAGCAACTTCAGATTCATTCACAGAagcagcaa 1213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 CAAACAATCTTAGCTGCAAAACAGTTCCAGCAACTTCAGATTCATTCACAGAAGCAGCAA 1275
Query 1214 caacaacagcaacaacaaca-c--caaca--a-cagcagcag---------------tat 1252
|||||||| ||||||||||| | ||||| | ||||||||| |||
Sbjct 1276 CAACAACAACAACAACAACAACAGCAACACCAACAGCAGCAGCAGCAACAGCAACAGTAT 1335
Query 1253 cagtttcaacagcaacagatgcaacagcTTATGCAGCAGCGGATTCAACAGCAGGAACAA 1312
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1336 CAGTTTCAACAGCAACAGATGCAACAGCTTATGCAGCAGCGGCTTCAACAGCAAGAACAA 1395
Query 1313 CAAAATGGAGTAAGACTCAAGCCTTCTCAACCCCAGAAAGAGAGCTGAGGAATATGAATG 1372
|||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||
Sbjct 1396 CAAAATGGAGTAAGACTCAAGCCTTCACAAGCCCAGAAAGAGAACTGAGGAATATGAATA 1455
Query 1373 TGTCCC 1378
||||||
Sbjct 1456 TGTCCC 1461
Score = 135 bits (73), Expect = 1e-30
Identities = 157/192 (82%), Gaps = 28/192 (15%)
Strand=Plus/Plus
Query 1405 GAAGAAAAAACATTTGGAT-AGCCCAAAGAAACAGAGTT-C---C-TTGC--A-ATGCAA 1455
|||| | |||||||||| | ||||||||||||||||||| | | |||| | ||||||
Sbjct 1522 GAAG-ATAAACATTTGGGTAAGCCCAAAGAAACAGAGTTCCGTGCATTGCAAATATGCAA 1580
Query 1456 TGCACTGCAATTATTAGTCGTTTGGATTTGGTTATTTTGGTATAGAGACTGGGTCTCGAA 1515
|||||||||||||||| | || | ||||| | |||| ||||||||||| ||||||||
Sbjct 1581 TGCACTGCAATTATTA---G-TT-G-TTTGG--A-TTTGATATAGAGACTGAGTCTCGAA 1631
Query 1516 ATCATAGTATGTaaaaaaaT-AT-A--ATC---A-C-GTTAATTTGTTATAATCTTATAA 1566
| ||||||||||||||| || || | || | | |||||||||||||||||||||||
Sbjct 1632 ACCATAGTATGTAAAAATATAATCACGTTCAAAAGCTGTTAATTTGTTATAATCTTATAA 1691
Query 1567 CAATTGTGTTTT 1578
||||||||||||
Sbjct 1692 CAATTGTGTTTT 1703
Score = 54.7 bits (29), Expect = 3e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 86 TTCACACTACAGCTGATTTAGATCTATTT 114
|||||||||||||||||||||||||||||
Sbjct 187 TTCACACTACAGCTGATTTAGATCTATTT 215
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80571874725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5