BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482070
Length=1064
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31380.1 | Symbols: STH | salt tolerance homologue | chr2:13... 1439 0.0
AT2G31390.1 | Symbols: | pfkB-like carbohydrate kinase family ... 67.6 2e-10
> AT2G31380.1 | Symbols: STH | salt tolerance homologue | chr2:13381910-13383470
FORWARD LENGTH=1125
Length=1125
Score = 1439 bits (779), Expect = 0.0
Identities = 1003/1103 (91%), Gaps = 47/1103 (4%)
Strand=Plus/Plus
Query 1 CCTTCTTATCTTCTTCTCTTCT-C-CAA--TCACT-CACAGAAACAAAACTGCTTTTGTC 55
|||||||||||||||||||||| | ||| | | | ||||||||||||||||||||||||
Sbjct 29 CCTTCTTATCTTCTTCTCTTCTCCTCAACTTGAATACACAGAAACAAAACTGCTTTTGTC 88
Query 56 TCTCAAGTCCTTTGTCTTTTAAAAAGGTTTTGTTCTTGAACAAGAG-AAGAAAACAAGAG 114
||||||||| |||||||| |||||||||| |||||||||||||| | ||| |||||| ||
Sbjct 89 TCTCAAGTCATTTGTCTTATAAAAAGGTTCTGTTCTTGAACAAGGGAAAG-AAACAAAAG 147
Query 115 GCTGAT-TTTCCTGTTTTGTAGATTCCTCTGATATTCAGATTCCCACTTCTCA-G----- 167
|||||| |||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 148 GCTGATAACTCCTGTTTTGTAGATTCCTCTGATATTCAGATTCTTACTTCTCAGGAAAAC 207
Query 168 ------G-AAA--------tttttttGAGAAATATGAAGATACAATGTGATGTGTGTGAG 212
| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 208 CCTAAAGAAAATTTCTGTTTTTTTTTGAGAAATATGAAGATACAATGTGATGTGTGTGAG 267
Query 213 AAAGCTCCGGCCACGCTTATATGTTGTGCCGATGAAGCTGCTCTGTGCGCTAAATGTGAT 272
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 268 AAAGCTCCGGCCACGCTTATATGTTGTGCTGATGAAGCTGCTCTCTGCGCTAAATGTGAC 327
Query 273 GTTGAGGTTCATGCTGCTAATAAGTTAGCTAGTAAACACCAACGCCTTTTTCTTGACTCT 332
||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||
Sbjct 328 GTTGAGGTTCATGCTGCTAATAAACTCGCTAGCAAACACCAACGCCTTTTTCTTGACTCT 387
Query 333 CTCTCAACTAAATTCCCTCCCTGCGACATCTGCCTTGAGAAGGCAGCTTTCATATTCTGT 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 CTCTCAACTAAATTCCCTCCCTGCGACATCTGCCTTGAGAAGGCAGCTTTCATATTCTGT 447
Query 393 GTAGAGGATAGGGCTCTGCTCTGCAGAGACTGCGACGAGGCGACCCATGCACCAAATACT 452
||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 448 GTAGAGGATAGGGCTCTGCTCTGCAGAGATTGCGATGAGGCGACCCATGCGCCAAATACT 507
Query 453 CGCTCTGCTAATCACCAGCGTTTCTTAGCCACTGGAATCCGAGTTGCTCTTAGTTCCACT 512
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 508 CGCTCTGCTAATCACCAGAGGTTCTTAGCCACTGGAATCCGAGTTGCTCTTAGTTCCACT 567
Query 513 ATTTGCAGTCAAGAAGTGGAGAAGAATCACTTTGACCCATCTAATCAGCAGAGTCTCTCT 572
| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 568 AGTTGCAATCAAGAAGTGGAAAAGAATCACTTTGACCCATCTAATCAGCAGAGTCTCTCT 627
Query 573 AAACCGCCAACTCAGCAACCCGCTGCTCCATCTCCTTTGTGGGCTACCGATGAATTCTTC 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 AAACCGCCAACTCAGCAACCCGCTGCTCCATCTCCTTTGTGGGCTACCGATGAATTCTTC 687
Query 633 CGCTACTCTGATCTTGAGTGCAGTAATAAGCAGAAAGAGCAACTCGACCTCGGGGAGCTG 692
|||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||
Sbjct 688 AGCTACTCTGATCTTGACTGCAGTAATAAGGAGAAAGAGCAACTCGATCTCGGGGAGCTG 747
Query 693 GATTGGCTTGCAGAGATGGGTCTGTTTGGTGACCAGCCTGATCAAGAGGCTCTACCGGCA 752
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 748 GATTGGCTTGCAGAGATGGGTCTGTTTGGTGACCAGCCTGATCAAGAGGCTCTACCGGTA 807
Query 753 GCCGAAGTTCCCGAGCTTTCCTTTTCACATTTGGCTCATGTTCATTCCTACAATAGACCT 812
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 808 GCCGAAGTTCCCGAGCTTTCCTTTTCACATTTGGCTCATGCTCATTCCTACAACAGACCT 867
Query 813 ATGAAGTCCAATGTACCCAACAAGAAGCAGAGACTTGAGTACCGGTATGATGATGATGAA 872
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 868 ATGAAGTCCAATGTACCCAACAAGAAGCAGAGGCTTGAGTACCGGTATGATGATGAAGAA 927
Query 873 GAGCACTTCCTAGTCCCCGACCTAGGCTAAACTATAGATGAA-CTAAATA-GCACTTAGT 930
||||||||||||||||||||||||||||||||||| |||||| ||| || || ||| |
Sbjct 928 GAGCACTTCCTAGTCCCCGACCTAGGCTAAACTATGGATGAATCTAC-TAAGCT-TTA-T 984
Query 931 TCGCATAT-GTCTCTACACGGGCTCATA-TATT-GT-T-TTCGCCTTGCTTTCTCCATGA 985
|||| | | || | || ||| | || | | |||||||||||||||||||||
Sbjct 985 AAT-ATATAG-CACTTGATTCGC--ATAGTCTTCGGCTCTTCGCCTTGCTTTCTCCATGA 1040
Query 986 TCTGGTTTGTGTATCACTGTA--TA-CAGGCTAAAACTTGGAAAA-CCTTATCATTTTAT 1041
|||| | |||||||||||||| || ||||||||||||||||||| ||||||||||||||
Sbjct 1041 TCTGATATGTGTATCACTGTAAGTAGCAGGCTAAAACTTGGAAAAACCTTATCATTTTAT 1100
Query 1042 TAGCAAGTGATGCCTTGAATTGC 1064
|||||||||| ||||| ||||||
Sbjct 1101 TAGCAAGTGAAGCCTTAAATTGC 1123
> AT2G31390.1 | Symbols: | pfkB-like carbohydrate kinase family
protein | chr2:13383423-13386209 REVERSE LENGTH=1283
Length=1283
Score = 67.6 bits (36), Expect = 2e-10
Identities = 43/46 (93%), Gaps = 1/46 (2%)
Strand=Plus/Minus
Query 1020 TTGG-AAAACCTTATCATTTTATTAGCAAGTGATGCCTTGAATTGC 1064
|||| |||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1283 TTGGAAAAACCTTATCATTTTATTAGCAAGTGAAGCCTTAAATTGC 1238
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52108165710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5