BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482071
Length=1239
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31390.1 | Symbols: | pfkB-like carbohydrate kinase family ... 1927 0.0
AT1G06030.1 | Symbols: | pfkB-like carbohydrate kinase family ... 893 0.0
AT2G31380.1 | Symbols: STH | salt tolerance homologue | chr2:13... 69.4 8e-11
> AT2G31390.1 | Symbols: | pfkB-like carbohydrate kinase family
protein | chr2:13383423-13386209 REVERSE LENGTH=1283
Length=1283
Score = 1927 bits (1043), Expect = 0.0
Identities = 1178/1243 (95%), Gaps = 9/1243 (1%)
Strand=Plus/Plus
Query 1 ATTTTTCTCGATTCTCCGATTTGATCCAACGA-TTCACAGATCTCTGATCTAATATGGCA 59
||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 41 ATTTTTCTCAATTCTCCGATTTGATCCAACGATTTCACAGATCTCTGATCTAA-ATGGCA 99
Query 60 TCCAACGGTGATAAAGGACTGATCGTTAGCTTCGGCGAGATGCTAATCGATTTCGTCCCA 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 100 TCCAACGGTGATAAAGGACTGATCGTTAGCTTCGGCGAGATGCTAATCGATTTCGTCCCT 159
Query 120 ACCGAATCCGGCGTCTCACTCGCCGAAGCTCCTGGATTCCTCAAAGCTCCAGGCGGTGCT 179
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 160 ACCGAATCAGGCGTCTCTCTCGCCGAAGCTCCTGGATTCCTCAAAGCTCCAGGCGGTGCT 219
Query 180 CCCGCAAACGTCGCAATCGCCGTTTCTCGTCTCGGTGGACGATCCGCCTTCGTCGGGAAA 239
||||| |||||||||||||| ||||||||||||||||||||||| || |||||||| |||
Sbjct 220 CCCGCTAACGTCGCAATCGCTGTTTCTCGTCTCGGTGGACGATCTGCTTTCGTCGGAAAA 279
Query 240 CTTGGAGACGACGAGTTCGGTCATATGTTGGCTGGGATTCTGAGGAAGAACGGTGTCGAT 299
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 280 CTTGGAGACGACGAGTTCGGTCATATGTTGGCTGGGATTTTGAGGAAGAACGGTGTTGAT 339
Query 300 GATCAGGGGATTAACTTCGATACAGGAGCTAGAACAGCTCTAGCTTTCGTTACGTTACGT 359
||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||
Sbjct 340 GATCAGGGGATTAACTTCGATACTGGAGCTAGAACTGCTTTAGCTTTCGTTACGTTACGT 399
Query 360 GCTGATGGAGATCGTGAGTTTATGTTTTACCGGAATCCTAGCGCCGATATGCTTCTCCGT 419
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 400 GCTGATGGAGATCGTGAGTTTATGTTTTACCGCAATCCTAGCGCCGATATGCTTCTTCGT 459
Query 420 CCTGATGAGCTCAATCTCGACCTCATCAGATCCGCGAAAGTGTTTCACTATGGATCAATA 479
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 CCTGATGAACTCAATCTCGACCTCATCAGATCCGCGAAAGTGTTTCACTATGGATCAATA 519
Query 480 AGTTTGATAGTGGAGCCGTGTAGGTCAGCTCATTTGAAGGCCATGGAAGTGGCGAAAGAG 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 AGTTTGATAGTGGAGCCGTGTAGGTCAGCTCATTTGAAGGCCATGGAAGTGGCGAAAGAA 579
Query 540 GCCGGAGCTCTTCTTTCCTATGACCCAAACCTTAGGGAACCTTTGTGGCCATCAAAGGAA 599
|| ||||||||||||||||||||||||||||| ||||| ||| ||||||||||||| |||
Sbjct 580 GCAGGAGCTCTTCTTTCCTATGACCCAAACCTCAGGGAGCCTCTGTGGCCATCAAAAGAA 639
Query 600 GAAGCCAAGACACAGATCATGAGCATCTGGGACAAAGCTGAGATCATCAAGGTGAGCGAT 659
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 640 GAAGCCAAAACACAGATCATGAGCATTTGGGACAAAGCTGAGATCATCAAGGTGAGCGAT 699
Query 660 GTTGAGCTTGAGTTTCTAACTGGAAGCAACAAAATCGATGATGAGACCGCATTGTCCTTG 719
|||||||||||||||||||||||||||||||| || |||||||||||||| ||| |||||
Sbjct 700 GTTGAGCTTGAGTTTCTAACTGGAAGCAACAAGATTGATGATGAGACCGCGTTGACCTTG 759
Query 720 TGGCATCCCAACTTGAAGCTCTTGCTT-GTTACTCTCGGTGAAAAGGGCTGTCGGTATTA 778
|||||||||||||||||||| ||| || || ||||| |||||||||||||||||||||||
Sbjct 760 TGGCATCCCAACTTGAAGCTGTTG-TTAGTCACTCTTGGTGAAAAGGGCTGTCGGTATTA 818
Query 779 CACCAAGACATTCAAAGGATCTGTTGACCCTTTCCATGTGAACGCTGTGGATACAACCGG 838
||||||||| ||||||||| | ||||||||||||||||||||||||||||| ||||||||
Sbjct 819 CACCAAGACTTTCAAAGGAGCCGTTGACCCTTTCCATGTGAACGCTGTGGACACAACCGG 878
Query 839 AGCTGGAGATTCCTTTGTCGGCGCTCTCCTAAACCAGATTGTCGATGATCGATCCGTTCT 898
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 879 AGCTGGAGATTCCTTTGTCGGTGCTCTTCTAAACCAGATTGTCGATGATCGATCCGTTCT 938
Query 899 CGAGGACGAAGAAAAATTGAGAAAAGTGCTGAGATTCGCAAATGCTTGTGGAGCAATCAC 958
|||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 939 CGAGGACGAAGAGAGATTGAGGAAAGTGCTGAGATTCGCAAATGCTTGTGGAGCAATCAC 998
Query 959 CACGACCAAGAAAGGAGCCATTCCAGCTCTTCCCTCAGATGCTGAAGTTCGCAGCTTTCT 1018
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 999 AACGACCAAAAAAGGAGCCATTCCAGCTCTTCCCTCAGATGCTGAAGTTCGGAGCTTTCT 1058
Query 1019 TGAAAAGAAATAGAAACAAAAACAACTCAAGCTTCTACCACGTAATCTGTTTTCGCGGCT 1078
|||||||||||||||||||| ||||||||||||||| ||||||||||||| |||| |
Sbjct 1059 CGAAAAGAAATAGAAACAAAA-CAACTCAAGCTTCTATTACGTAATCTGTTTCCGCGA-T 1116
Query 1079 T-TCTTCGCTTTTTGTATTCTTGTTTTCGAATGGTTGAAATCGAGAAGAGAAACGAATTC 1137
| ||||| ||||||||||||||||||||| ||||||||| |||||||||||||| |||||
Sbjct 1117 TATCTTCTCTTTTTGTATTCTTGTTTTCGGATGGTTGAA-TCGAGAAGAGAAACAAATTC 1175
Query 1138 AGCATTCCGCTCTGTTTTTGTTACTCTTCTTCAAATGTAATGATTTA-AAAAGACGTATG 1196
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1176 GGCATTCCGCTCTGTTTTTGTTTCTCTTCTTCAAATGTAATGATTTAGAAAAGACGTATG 1235
Query 1197 TTGCAATTCAAGGCATCACTTGCTAATAAAATGATAAGGTTTT 1239
|||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1236 TTGCAATTTAAGGCTTCACTTGCTAATAAAATGATAAGGTTTT 1278
> AT1G06030.1 | Symbols: | pfkB-like carbohydrate kinase family
protein | chr1:1826880-1828161 FORWARD LENGTH=1021
Length=1021
Score = 893 bits (483), Expect = 0.0
Identities = 821/981 (84%), Gaps = 35/981 (4%)
Strand=Plus/Plus
Query 58 CATCCAAC-G-G-TGATAAAGGACT-GATCGTTAGCTTCGGCGAGATGCTAATCGATTTC 113
|||||||| | | | ||||||| || | |||||||||||||||||||||| || || |||
Sbjct 8 CATCCAACGGCGATAATAAAGGTCTCG-TCGTTAGCTTCGGCGAGATGCTCATTGACTTC 66
Query 114 GT-CCCAACCGAATCCGGCGTCTCACTCGCCGAA-GCTCCTGGATTCCTCAAAGCTCCAG 171
|| ||| || |||||||||||||| ||| | ||| || ||||||| ||||||||||| |
Sbjct 67 GTGCCC-ACGGAATCCGGCGTCTCCCTCTCTGAATCCT-CTGGATTTCTCAAAGCTCCTG 124
Query 172 GCGGTGCTCCCGCAAACGTCGCAATCGCCGTTTCTCGTCTCGGTGGACGATCCGCCTTCG 231
| |||||||| ||||||||||| ||||| ||||| |||||||| || || |||||||||
Sbjct 125 GTGGTGCTCCAGCAAACGTCGCTATCGCTGTTTCCCGTCTCGGAGGTCGCGCCGCCTTCG 184
Query 232 TCGGGAAACTTGGAGACGACGAGTTCGGTCATATG-TTGGCTGGGATTC-TGAGGAAGAA 289
|||| ||||| || ||||| ||||| || |||||| || || ||| || |||| |||||
Sbjct 185 TCGGAAAACTCGGGGACGATGAGTTTGGCCATATGCTT-GC-CGGAATCTTGAGAAAGAA 242
Query 290 CGGTGTCGATGATCAGGGGATTAACTTCGATACAGGAGCTAGAACAGCTCTAGCTTTCGT 349
|| |||||| ||||||||||| || ||||||| |||||| ||||| || || ||||| ||
Sbjct 243 CGATGTCGACGATCAGGGGATCAATTTCGATAAAGGAGCAAGAACCGCACTCGCTTTTGT 302
Query 350 TACGT-TACGTGCTGATGGAGATCGTGAGTTTATGTTTTACCGGAATCCTAGCGCCGATA 408
|| | | ||| |||| ||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 303 GAC-TCTGCGTTCTGACGGAGAACGAGAGTTTATGTTTTACCGGAATCCCAGCGCCGATA 361
Query 409 TGCTTCTCCGTCCTGATGAGCTCAATCTCGACCTCATCAGATCCGCGAAAGTGTTTCACT 468
|||||||||| || ||||| ||||| ||||| || |||||||||||||||||||||||||
Sbjct 362 TGCTTCTCCGGCCAGATGAACTCAACCTCGAACTAATCAGATCCGCGAAAGTGTTTCACT 421
Query 469 ATGGATCAATAAGTTTGAT-AGTGGAGCCGTGTAGGTCAGCTCATTTGAAGGCCATGGAA 527
||||||||||||||||||| | | |||| ||||| |||||||| ||||||| |||||
Sbjct 422 ATGGATCAATAAGTTTGATTACAG-AGCCATGTAGATCAGCTCACATGAAGGCGATGGAG 480
Query 528 GTGGCGAAAGAGGCCGGAGCTCTTCTTTCCTATGACCCAAACCTTAGGGAACCTTTGTGG 587
||||||||||| || ||||||||||||||||| || |||||||| ||||||||| |||||
Sbjct 481 GTGGCGAAAGAAGCTGGAGCTCTTCTTTCCTACGATCCAAACCTCAGGGAACCTCTGTGG 540
Query 588 CCATCAAAGGAAGAAGCCAAGACACAGATCATGAGCATCTGGGACAAAGCTGAGATCATC 647
||||| |||||||| | || |||||||||||| ||||||||||| ||||| || ||
Sbjct 541 CCATCCCCTGAAGAAGCTAGGAAACAGATCATGAGTATCTGGGACAAGGCTGACATTATT 600
Query 648 AAGGTGAGCGATGTTGAGCTTGAGTTTCTA-ACTGGAAGCAACAAA-ATCGATGATGAGA 705
||||| || || || ||||||||||| || || |||| ||| || || ||||||||||
Sbjct 601 AAGGTCAGTGACGTCGAGCTTGAGTT-CTTGACAGGAAACAA-AACGATTGATGATGAGA 658
Query 706 CCGC-ATTGTC-CTTGTGGCATCCCAACTTGAAGCTCTTGCTTGTTACTCTCGGTGAAAA 763
| || || ||| || ||||||||| || |||||||||||||||||||| || || |||||
Sbjct 659 CAGCTAT-GTCTCT-GTGGCATCCTAATTTGAAGCTCTTGCTTGTTACACTTGGCGAAAA 716
Query 764 GGGCTGTCGGTATTACACCAAGACATT-CAAAGGATCTGTTGACCCTTTCCATGT-GAAC 821
|| ||||| || ||||| ||| ||| | | ||||||||||| |||||||||| || |
Sbjct 717 TGGATGTCGTTACTACACTAAGG-ATTTCCATGGATCTGTTGAAACTTTCCATGTTGA-C 774
Query 822 GCTGTGGATACAACCGGAGCTGGAGATTCCTTTGTCGGCGCTCTCCTAAACCAGATTGTC 881
||||||||||| || |||||||| ||||| ||||| ||||| || ||||||||||||||
Sbjct 775 GCTGTGGATACTACTGGAGCTGGTGATTCTTTTGTTGGCGCGCTTCTAAACCAGATTGTT 834
Query 882 GATGATCGATCCGTTCTCGAGGACGAAGAAAAATTGAGAAAAGTGCTGAGATTCGCAAAT 941
||||||| ||| || |||||||| ||||| | ||||||||||||||||||||| |||||
Sbjct 835 GATGATCAATCTGTACTCGAGGAGGAAGAGAGATTGAGAAAAGTGCTGAGATTTGCAAAC 894
Query 942 GCTTGTGGAGCAATCACCACGACCAAGAAAGG-AGCCATTCCAGCTCTTCCCT-CAGAT- 998
||||||||||||||||| ||||| || ||||| |||||||||||||||||| | |||||
Sbjct 895 GCTTGTGGAGCAATCACGACGACTAA-AAAGGGAGCCATTCCAGCTCTTCC-TACAGATT 952
Query 999 GCTGAAGTTCGCAGCTTTCTT 1019
| ||||| || ||| ||||||
Sbjct 953 G-TGAAGCTCTCAGTTTTCTT 972
> AT2G31380.1 | Symbols: STH | salt tolerance homologue | chr2:13381910-13383470
FORWARD LENGTH=1125
Length=1125
Score = 69.4 bits (37), Expect = 8e-11
Identities = 41/43 (95%), Gaps = 0/43 (0%)
Strand=Plus/Minus
Query 1197 TTGCAATTCAAGGCATCACTTGCTAATAAAATGATAAGGTTTT 1239
|||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1125 TTGCAATTTAAGGCTTCACTTGCTAATAAAATGATAAGGTTTT 1083
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60893261085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5