BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482077
Length=1510
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31480.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2191 0.0
AT2G14475.1 | Symbols: | pseudogene, similar to putative beta ... 278 1e-73
> AT2G31480.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G05894.1);
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr2:13408978-13410999 REVERSE LENGTH=2022
Length=2022
Score = 2191 bits (1186), Expect = 0.0
Identities = 1408/1515 (93%), Gaps = 16/1515 (1%)
Strand=Plus/Plus
Query 1 CAAACAAAACTTTGTATTTTGGTTCTGAATATTGAAGGAGCTAAACTGAAACTACAATAT 60
||||| |||| ||||||||||| |||||| ||||||||||||||||||||||| ||||||
Sbjct 4 CAAACCAAACATTGTATTTTGGCTCTGAAGATTGAAGGAGCTAAACTGAAACTGCAATAT 63
Query 61 ATATGGCTTCTACAGGTGGTGGGAAAGATGGATCTAGAGGTTTTGTGAAGAGGGTTACAT 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 64 ATATGGCTTCTACAGGTGGTGGGAAAGATGGATCTAAAGGTTTTGTGAAGAGGGTTACAT 123
Query 121 CAACTTTCTCCATTAGGAAAAAGAAGAACACAACAAGTGATCCAAAACTTCTTCTTCCAC 180
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 124 CAACTTTCTCCATTAGGAAAAAGAAGAACACAACAAGTGATCCAAAACTACTTCTTCCTC 183
Query 181 GATCGAAATCAACCGGTGCTAACTATGAATCCATGAGGCTGCCTCAGGGGAAAAAGGCTC 240
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 184 GATCGAAATCAACCGGTGCTAACTATGAATCTATGAGGCTACCTCAGGGGAAAAAGGCTC 243
Query 241 TTCCAGATGCT---ACAACAAAAGACACTAAGAGGACTAAATCTGCAGGTGTTTCGCCAC 297
||||||||| | |||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 244 TTCCAGATGTTGTTACAACAAAAGACACAAAGAGAACCAAATCTGCAGGTGTTTCGCCAC 303
Query 298 AACCAAGGCGTGAAAAGATCGATGAATCCGGTAAACAGTTTATGAAGATGAGATGTTTTG 357
||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 304 AACCAAGACGTGAAAAGATTGATGAATCCGGTAAACAGTTTATGAAGGTGAGATGTTTTG 363
Query 358 ATGATAATGACTCCATTTGGTTGTCTTCAGATTGCGCGTCTCCTACGTCTCTTTTAGAGG 417
|||| | ||||||||||||||| ||||||||||| || ||||||||||||||||||||||
Sbjct 364 ATGACAGTGACTCCATTTGGTTATCTTCAGATTGTGCCTCTCCTACGTCTCTTTTAGAGG 423
Query 418 AACGAAGATTGTCTGTCTCGTTTCATTTCTCAGTAGACGAAAAGATCGTCTCATGGTTGT 477
|||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 424 AACGTAGATTATCTGTCTCGTTTCATTTCTCAGTAGACGAAAAGATCGTCTCGTGGTTGT 483
Query 478 CTAGTGTGGCGAACTCTTCTCTGTCTTTAAATCAAGAATCCACCAGATCAACCAAAGAGA 537
| |||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 484 CCAGTGTGGCTAACTCTTCTCTGTCTTTAAATCAAGAATCCACCAGCTCAAACAAAGAGA 543
Query 538 ATCATCAGCAAACAAGTTCAAAGAACGCAAAATGTTCTTTGGAAAACATTCGAAAGGATG 597
||||||| |||| ||||||||||||| ||||| |||||| |||||| ||||||| ||||
Sbjct 544 ATCATCATCAAAAAAGTTCAAAGAACACAAAAACTTCTTTAGAAAACGTTCGAAAAGATG 603
Query 598 GAAAATTTTGCAACTCA---GCTGGGAAAGCTCGTGGAACTGGTTCTGCAAAGCCGTCTT 654
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 604 GAAAAGTTTGCAACTCATCAGCTGGGAAAGCTCGTGGTACTGGTTCTGCAAAGCCGTCTT 663
Query 655 CGCGTTTACCAGAAAGCAACAACAAGCCTTGTCCTCAGAAACCATGTGAAAAGTCATCTA 714
| ||||||||||||||||||| ||||||||||||||| ||||||| |||||||||
Sbjct 664 ----T--ACCAGAAAGCAACAACAAGACTTGTCCTCAGAAACAATGTGAAGAGTCATCTA 717
Query 715 GTTCCAATAGATTAGTGAGTCCTGAAGAAAAGAAAGTTAGCTTCTCAGTAG-AAGAAACA 773
|||||| ||||| |||| || ||||||||||||||||||||||||||||| || |||||
Sbjct 718 TTTCCAACAGATTTGTGACTCTTGAAGAAAAGAAAGTTAGCTTCTCAGTAGCAA-AAACA 776
Query 774 GAGAAGTCTCCTTCACCGGTTAATTCAACTGCCACCGCGACATCCTCGTTAAAGAAGAGT 833
||||||||||||||||| | ||| ||||||||||| |||||||| || ||||||||||||
Sbjct 777 GAGAAGTCTCCTTCACCAGATAACTCAACTGCCACTGCGACATCATCATTAAAGAAGAGT 836
Query 834 GCAGAGATTAAGGACTCAAAGAGCAAGATTGCTGTGGAGCCACTTTTCTGGCCATTTGAG 893
||||||||| || | ||||||| ||||||| ||||||||||||||| ||||||||||||
Sbjct 837 GCAGAGATTGGGGTCACAAAGAGTAAGATTGTTGTGGAGCCACTTTTTTGGCCATTTGAG 896
Query 894 CAGAAGTTTGATTGGACACCAGAGGATATCTTAAAGCATTTCTCCATGTCTCC-ACGGAG 952
||||||||||||||||||||||||||||| ||||||||||| || |||||||| | ||||
Sbjct 897 CAGAAGTTTGATTGGACACCAGAGGATATTTTAAAGCATTTTTCAATGTCTCCGA-GGAG 955
Query 953 AAAGAAGTCGCTAGGATCCAAAATTGCAGGTACCTCTCCAAGATCAATGAGGGCACAACT 1012
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 956 AAAGAAGTCGCTAGGATCCAAGATTGCAGGTACCTCTCCAAGATCAATGAGGGCACAACT 1015
Query 1013 CCAAACAAGAAAGCTAGATCTCAAAGAAGGGTGTAAGAGGAAGCTCATGTTCAACGGTCA 1072
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1016 CCAAACAAGAAAGCTAGATCTAAAAGAAGGGTGTAAGAGAAAGCTCATGTTCAACGGTCC 1075
Query 1073 TGGATCAAATTCAAAACCAACAAGGATCCCAGAACTAAACAGAACAATCAGCACTAGCAG 1132
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1076 TGGATCAAATTCAAAACCAACAAGAATCCCAGAACTAAACAGAACAATCAGCAATAGCAG 1135
Query 1133 CAACAACAGTTGCACCAAGAAGACCGAGATCAGTAAGAACGAACAACCTATAAGGAACAG 1192
|||||| ||| ||| ||||| ||||||||||| |||||| |||||||||||||||||||
Sbjct 1136 CAACAATAGTAGCATGAAGAAAACCGAGATCAGCAAGAACCAACAACCTATAAGGAACAG 1195
Query 1193 TGTGAAGAGAAACAAAAGTTTGCCGTCGAGGTTGAGAAAATCGAGCAAAATATCTTCAAA 1252
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TGTGAAGAGAAACAAAAGTTTACCGTCGAGGTTGAGAAAATCGAGCAAAATATCTTCAAA 1255
Query 1253 GGTGGTACCTGTTGAAGCTGCAGATGAGACTGTAGAAATACTTAAGGAGCAAAAAACACC 1312
|||||||||| |||||||||| || |||| || ||||||| |||| ||||||||||||||
Sbjct 1256 GGTGGTACCTATTGAAGCTGCGGAAGAGAGTGGAGAAATAGTTAAAGAGCAAAAAACACC 1315
Query 1313 TAAGAAGCTCATCATGACACGCAAATCCAGGACATTCTTAGAAGATGACTTTGCTTTGAT 1372
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1316 TAAGAAGCTCATCATGACCCGCAAGTCCAGGACATTCTTAGAAGATGACTTTGCTTTAAT 1375
Query 1373 GAATGATTTCTCTATAGAAAAGGCGGTCGGGCTTTGCGAGTTCAAGGGAAGAGAAGGCAT 1432
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1376 GAATGATTTCTCTATAGAAAAGGCGGTCGGGCTTTGCGAGTTTAAGGGAAGAGAAGGCAT 1435
Query 1433 AGATTCAGATTTCAACACTGATGGTTTCTTGTTTGACGATTCTCTATGAAAAGAGAAGGC 1492
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1436 AGATTCAGATTTCAACACTGATGGTTTCTTGTTCGACGATTCTCTATGAAAAGAAAAGGC 1495
Query 1493 TTTACAGGTTCAATA 1507
||||||||||| |||
Sbjct 1496 TTTACAGGTTCGATA 1510
> AT2G14475.1 | Symbols: | pseudogene, similar to putative beta
proteasome subunit, blastp match of 64% identity and 2.7e-16
P-value to GP|14594921|emb|CAC43321.1||AJ291736 putative
beta proteasome subunit {Nicotiana tabacum} | chr2:6163928-6164963
REVERSE LENGTH=1036
Length=1036
Score = 278 bits (150), Expect = 1e-73
Identities = 168/177 (95%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 1256 GGTACCTGTTGAAGCTGCAGATGAGACTGTAGAAATACTTAAGGAGCAAAAAACACCTAA 1315
||||||| ||||||||||||| ||||||| ||||||| |||| |||||||||||||||||
Sbjct 177 GGTACCTATTGAAGCTGCAGAAGAGACTGGAGAAATAGTTAAAGAGCAAAAAACACCTAA 118
Query 1316 GAAGCTCATCATGACACGCAAATCCAGGACATTCTTAGAAGATGACTTTGCTTTGATGAA 1375
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 117 GAAGCTCATCATGACCCGCAAGTCCAGGACATTCTTAGAAGATGACTTTGCTTTGATGAA 58
Query 1376 TGATTTCTCTATAGAAAAGGCGGTCGGGCTTTGCGAGTTCAAGGGAAGAGAAGGCAT 1432
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 57 TGATTTTTCTATAGAGAAGGCGGTCGGGCTTTGCGAGTTCAAGGGAAGAGAAGGCAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74497608780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5