BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482083
Length=1115
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31560.1 | Symbols: | Protein of unknown function (DUF1685)... 1598 0.0
AT1G05870.1 | Symbols: | Protein of unknown function (DUF1685)... 316 2e-85
> AT2G31560.1 | Symbols: | Protein of unknown function (DUF1685)
| chr2:13436557-13438011 FORWARD LENGTH=1169
Length=1169
Score = 1598 bits (865), Expect = 0.0
Identities = 1032/1109 (93%), Gaps = 25/1109 (2%)
Strand=Plus/Plus
Query 1 AAAAACAATCACAGAGAGAAAAA-CAATGGCTTGTATTCACATCGAATCATCACAT---- 55
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 29 AAAAACAATCACAGAGAGAAAAACCAATGGCTTGTATTCACATCGAATCATCACATCCAC 88
Query 56 C--CATGGAAGACACACTCTGTCCAAGTGAAGAAACCAACAAATGCTGATGTTACATCGA 113
| |||||||||||||||||||||||| ||| |||||| |||||||||||| || |||||
Sbjct 89 CTGCATGGAAGACACACTCTGTCCAAGAGAACAAACCAGCAAATGCTGATGATATATCGA 148
Query 114 ACACAGTCTTACCAGAACACCACCACGACGGTGGTGACGGAGGAATCCAAGAAACGTGGG 173
||||| |||||||| | | |||||||||||||| ||||| |||||||||||||||||||
Sbjct 149 ACACAACCTTACCAG-A-A-CACCACGACGGTGGCGACGGGGGAATCCAAGAAACGTGGG 205
Query 174 CCGCGATTGGAAACTCCATC-GTAGGAGGAGGAGGCTATTTCGCCGGCGAGAGTAGGAAT 232
||||||||||| | || | | | |||||||||||||||||||||| |||||||||
Sbjct 206 CCGCGATTGGAGATTCTGGCGGCA-GAGGAGGAGGCTATTTCGCCGGAGAGAGTAGG--- 261
Query 233 AAGAAGCTGGAGAA-AAGGAAGAGCCAAGTGTTGCTTGAGGGATACGCTTTGGATGATAA 291
|||||||||||||| || |||||||||||||||||||||||||||||| ||||||||| |
Sbjct 262 AAGAAGCTGGAGAAGAA-GAAGAGCCAAGTGTTGCTTGAGGGATACGCGTTGGATGATCA 320
Query 292 AGATGATTTGACGAGAGCCAAGAGTTTGACGGATGATGATCTTGAGGAGCTTAAAGGTTG 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 AGATGATTTGACGAGAGCCAAGAGTTTGACGGATGATGATCTTGAGGAGCTTAAAGGTTG 380
Query 352 TTTAGATCTAGGGTTTGGTTTTAGTTACGACGAGATCCCTGAGCTTTGTAATACTTTGCC 411
|||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 381 TTTAGATCTAGGGTTTGGTTTTAGTTACGATGAGATCCCTGAGCTTTGCAACACTTTGCC 440
Query 412 TGCGTTAGAGCTTTGTTACTCCATGAGCCAGAAGTTCTTAGATGATAAGCAACAAAATCA 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 441 TGCGTTAGAGCTTTGTTACTCCATGAGCCAGAAGTTCTTAGATGATAAGCAACAAAACCA 500
Query 472 CCACAAGTCCCCGGATGAAGATGATTCGCCTCCACCACCAACCACGACCGCTCCAATTGC 531
||||||||||| ||| |||||||||||| | |||||||| ||||||||||||||||||||
Sbjct 501 CCACAAGTCCCAGGAGGAAGATGATTCGTCGCCACCACCGACCACGACCGCTCCAATTGC 560
Query 532 AAATTGGAAGATCTCTAGTCCTGGTGATGATCCAGATGATGTAAAAGCTAGACTCAAATA 591
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 561 AAATTGGAAGATCTCTAGCCCTGGTGATGATCCAGATGATGTAAAAGCTAGACTCAAATA 620
Query 592 TTGGGCACAAACTGTTGCTTGCACCGTACGATTGTGCAGCTGAACAAGAATCGATCTTCT 651
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||
Sbjct 621 TTGGGCACAAACTGTTGCTTGCACCGTACGGTTGTGCAGCTGAACTAGAATCGATTTTCA 680
Query 652 TCATTGAACCAG-GAAAAGACCGTCTTTGCAAGAATGAAGTCTCTGCCATTGTTAGCTGA 710
|| ||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 681 TCTTTGAACCAGAGAAA-GACCGTCTTTGCAAGAATGAAGTCTCTGCCATTGTTCGCTGA 739
Query 711 GAATAGACCTGCAAATGGGTCTGTGGATAAACTGTTCTGCTGACTGTTTTGTTTGAGTGC 770
||||||||||||||||| |||||||||||||||||||| ||||||||| || ||||||||
Sbjct 740 GAATAGACCTGCAAATGTGTCTGTGGATAAACTGTTCTCCTGACTGTTGTGATTGAGTGC 799
Query 771 AATGTGGTTGCTTTAACATCTAACATCTGAATTAGGGTTCTTGTCCTCTCATACGCAGTG 830
||||||||||||| ||||| | ||||||||||||||||||||||||||||||| ||||||
Sbjct 800 AATGTGGTTGCTT-AACATATGACATCTGAATTAGGGTTCTTGTCCTCTCATATGCAGTG 858
Query 831 ATGAGATTTAGAGACACAAATCAATCTCCAACTGttttttttGAAGATCTCTGCTTTTGG 890
|||||||||||| ||| |||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 859 ATGAGATTTAGACACAGAAATCAATCTCCAACTGTTTTTTT-GAAGACCTCTGTTTTTGG 917
Query 891 CTGAGGCTTATATGATAAC-TTT-GCTTCAATCACAAGATGTCAACAAAGAAAGCACATG 948
|||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||
Sbjct 918 CTGAGGCTTATATGATGAGGTTTTGCTTCAATCACAAGATGTCAACAAAGAAAGCACATG 977
Query 949 ACCTTTCTTTTATGTTCTTTTACATGTGATTCTTATCTTTTTGTCCCGTGGCTAGGAAAG 1008
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 ACCCTTCTTTTATGTTCTTTTACATGTGATTCTTATCTTTTTGTCCCGTGGCTAGGAAAG 1037
Query 1009 AATCTGAAACGTTTTGTGGTCATAAGTTGTGAACACGCTTAAACGTGTCGTGTACGATAG 1068
|||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1038 AATCAGAAACTTTTTGTGGTCATAAGTTGTGAACACACTTAAACGTGTCGTGTACGATAG 1097
Query 1069 GGCAACA-TCCTT-CACATGTTCTTTTTA 1095
||||| | ||||| |||||||||||||||
Sbjct 1098 GGCAAAAATCCTTTCACATGTTCTTTTTA 1126
> AT1G05870.1 | Symbols: | Protein of unknown function (DUF1685)
| chr1:1772211-1773293 REVERSE LENGTH=878
Length=878
Score = 316 bits (171), Expect = 2e-85
Identities = 301/363 (83%), Gaps = 12/363 (3%)
Strand=Plus/Plus
Query 282 TGGATGAT--AAA-GATGATTTGACGAGAGCCAAGAGTTTGACGGATGATGATCTTGAGG 338
|||||||| ||| || ||| |||||||| ||||||||||||||||||| || || || |
Sbjct 277 TGGATGATCAAAAGGACGATCTGACGAGATCCAAGAGTTTGACGGATGACGACCTCGAAG 336
Query 339 AGCTTAAAGGTTGTTTAGATCTAGGGTTTGGTTTTAGTTACGACGAGATCCCTGAGCTTT 398
| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 337 ATCTTAGAGGTTGTTTAGATCTAGGGTTTGGTTTTAGCTACGACGAGATCCCTGAGCTCT 396
Query 399 GTAATACTTTGCCTGCGTTAGAGCTTTGTTACTCCATGAGCCAGAAGTTCTTAGATGATA 458
| || ||||| ||||| || |||||||| || || |||||||||||||||||||| ||||
Sbjct 397 GCAACACTTTACCTGCTTTGGAGCTTTGCTATTCAATGAGCCAGAAGTTCTTAGACGATA 456
Query 459 AGCAACA-AAATCACCACAAG-TCCC-CGGATG-AAGAT-GATTCGCCTCCACCACCAAC 513
||||| | |||||||| || | | ||| || ||||| | | || | || ||||
Sbjct 457 AGCAAAATAAATCACCGGAAACTTCGTCGG-TGGAAGATTG-TCCGTCGCCTCCACTGGT 514
Query 514 CAC-GACCGCTCCAATTGCAAATTGGAAGATCTCTAGTCCTGGTGATGATCCAGATGATG 572
||| | || |||| ||||| |||||||||||||||||||| |||||| |||| |||||||
Sbjct 515 CACCG-CCACTCCGATTGCCAATTGGAAGATCTCTAGTCCCGGTGATAATCCGGATGATG 573
Query 573 TAAAAGCTAGACTCAAATATTGGGCACAAACTGTTGCTTGCACCGTACGATTGTGCAGCT 632
| |||||||| |||||||| ||||||||| | ||||| || || || | |||||||||||
Sbjct 574 TGAAAGCTAGGCTCAAATACTGGGCACAAGCCGTTGCCTGTACTGTCCAATTGTGCAGCT 633
Query 633 GAA 635
|||
Sbjct 634 GAA 636
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54668393505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5