BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482086
Length=1220
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31600.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1552 0.0
AT3G53860.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 544 1e-153
> AT2G31600.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT3G53860.1); Has 35333
Blast hits to 34131 proteins in 2444 species: Archae - 798;
Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531;
Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr2:13448190-13450095 REVERSE LENGTH=1269
Length=1269
Score = 1552 bits (840), Expect = 0.0
Identities = 1068/1175 (91%), Gaps = 27/1175 (2%)
Strand=Plus/Plus
Query 1 CCGACGACGGCAATGGCGTCAGCTTCCAAGAACATTCAGCAAAACCCTTTCTCCTCGAAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CCGACGACGGCAATGGCGTCAGCTTCCAAGAACATTCAGCAAAACCCTTTCTCCTCGAAA 60
Query 61 CCGCCAAGGCCTCCGTCTTCCTCCGGCGCTGCATCTACTTCCGCCGTGGCTTCCACCTCA 120
|| ||| ||||||||| |||||||||||||||||| || |||| |||||||||||||||
Sbjct 61 CCACCACGGCCTCCGTATTCCTCCGGCGCTGCATCAACAACCGCAGTGGCTTCCACCTCA 120
Query 121 GCCGAGCCCCAAATACGGAACCCTACCTCAAACCCTAGCCCTAGCACAAACGTTTTACCG 180
|||||||||| ||| || ||| |||||| ||| |||| ||||||||| | || ||||||
Sbjct 121 GCCGAGCCCCTAATTCGAAACTCTACCTTAAATCCTAACCCTAGCACCAGCGGCTTACCG 180
Query 181 TCGACTTCGAATTTACCGATTACGATGTCACAAGAAGATGAAATCCTCGCACTTTCCAGT 240
||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 TCGACATCGAATTCACCGATTACGATGTCACAAGAAGATGAAATCCTCGCACGCTCCAGT 240
Query 241 CACCTAACCCGCCCGGAGCTTCTCCATCGCCGGTCACGCAACCTAAAGCAGCTCGCCAAG 300
||| ||||||| ||||||||||| | ||||| |||| |||||| |||||||| ||||||
Sbjct 241 CACATAACCCGGTCGGAGCTTCTCAAACGCCGATCACACAACCTGAAGCAGCTGGCCAAG 300
Query 301 TGTTATAGAGACAATTATTGGGCTATAATGGAGGATGTCAAGGCGCAACACAGGGATTAT 360
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 301 TGTTATAGAGACAATTATTGGGCTTTAATGGAGGATGTCAAGGCACAACACAGGGATTAT 360
Query 361 TGGTGGAAGTATGGGATTAGTCCGTTTAAAGACGAACAGAACCAATCGAATAAGAGACGG 420
|||||||||||||||||||||| ||||||||||||| | || ||||||||||||||||||
Sbjct 361 TGGTGGAAGTATGGGATTAGTCAGTTTAAAGACGAAAATAATCAATCGAATAAGAGACGG 420
Query 421 AGGCTTGGTCAAGAGGGAGATATCGGAGA---TGGTGATGCTGTTGAAGGTAGTGGAGAT 477
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 421 AGGCTTGGTCAAGAGGGAGATATCGGAGATGGTGGTGATGCTGTTGAAGGTAGTGGAGAC 480
Query 478 AATGGTAATAACAATGATGGTGGTAATGGTGTTAAGAGTGATCAGTATGCGAATAGTAAT 537
|||| || |||| | | | | |||||||||||||||||||||||||||||||||||
Sbjct 481 AATGTTACTAAC-A--A---T-G--ATGGTGTTAAGAGTGATCAGTATGCGAATAGTAAT 531
Query 538 AGTGGGAGTTGTATGTATGGATGCAAAGCTAAAGCTATGGCGCTTACGAAATACTGTCAG 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 TGTGGGAGTTGTATGTATGGATGCAAAGCTAAAGCTATGGCGCTTACGAAATACTGTCAA 591
Query 598 CTGCATATTCTTAAGGATAGTAAGCAGAAGCTCTACACTGGTTGTACAAACGTCATTAAA 657
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 592 TTGCATATTCTCAAGGATAGTAAGCAGAAGCTCTACACTGGTTGCACAAACGTCATTAAA 651
Query 658 CGAGCTCCAGCAGGACCATTACTTTGTGGAAAACCAACACTTGGGTCGACTGTTCCTGTA 717
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 652 CGAGCCCCAGCAGGACCATTACTTTGTGGAAAACCAACACTTGCGTCGACTGTTCCTGCA 711
Query 718 CTCTGTAATGTACACTTCCAGAAAGCCCAAAAGCATGTTGCTAAAGCTTTAAAGGATGCT 777
|| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 712 CTGTGTAATATACACTTCCAGAAAGCCCAAAAGCATGTGGCTAAAGCTTTAAAGGATGCT 771
Query 778 GGTCACAATGTCTCTTCAACAAGCAAGCCTCCCCCGAAGCTCCATGTTATAGTAGCTGCG 837
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 772 GGTCATAATGTCTCTTCAACAAGCAAGCCTCCCCCAAAGCTCCATGTTATAGTAGCTGCG 831
Query 838 TTTGTGCATCATATTCAAGCAAAACGAAAAAATCCACACAAGGATTGTAAACTTAAAAGT 897
|||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||
Sbjct 832 TTTGTGCATCATATTCAAGCGAAACGAAAAAATCCACAGAAGGAGTGTAAACTTAAAAGT 891
Query 898 GTAGTAAAAGAAGAAAATACAAGCTGAGTCAAGCTGTTAGCGTTCCCAGGAGTTATTTCA 957
||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||
Sbjct 892 GTAGTAAAAGAAGAAAATACAAGCTGAGTTGAGCTGTTAGCGTTGCCAGAAGTTATTTTT 951
Query 958 GTGTATGTCC-AGAAGGGAAAAGGTCAGGGTCTTTGCCT-A--ATG--ATTCTAAGAAGT 1011
|||||||||| |||||||||||||| ||| ||| ||||| | || ||||||||||||
Sbjct 952 GTGTATGTCCCAGAAGGGAAAAGGTGAGGATCTCTGCCTTACTATATCATTCTAAGAAGT 1011
Query 1012 GAAATAAAACTTAT-ATGTTGCGCTCTGATTCTTCTACAGATTTTGTTTCAGTGTCCTGT 1070
|| ||||||| ||| |||||||||||| | || ||||||||||||||| ||||||
Sbjct 1012 GACATAAAACGTATTATGTTGCGCTCTTAATCGTCTACAGATTTTGTTACAGTGT----- 1066
Query 1071 AGGTATCAGATGTTGTGTATATGCGCTGAGCTATTAAGAGAGGTTTTGTTACAGTGTCAT 1130
||||||| |||||| | || ||| |||||||||||||||||||||||||||||||||
Sbjct 1067 AGGTATCGGATGTT-T--ATCTGCCCTGAGCTATTAAGAGAGGTTTTGTTACAGTGTCCG 1123
Query 1131 GTAGGGTATAGTAGCTAAGGTAGTGGTAGTTTATT 1165
|||||||||||||| | || |||||||||||||||
Sbjct 1124 GTAGGGTATAGTAGTTTAGATAGTGGTAGTTTATT 1158
Score = 91.6 bits (49), Expect = 2e-17
Identities = 53/55 (96%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 1166 GTTGGCACTCATTCTAACATTTGGAGATGTCCATTTCAGTTTTGTTGCAATTTTG 1220
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1212 GTTGGAACTCATTCTAACATTTGGAGATGTCCATTTCAGTTTAGTTGCAATTTTG 1266
> AT3G53860.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G31600.1); Has 70 Blast
hits to 70 proteins in 17 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other
Eukaryotes - 4 (source: NCBI BLink). | chr3:19949562-19951290
REVERSE LENGTH=1154
Length=1154
Score = 544 bits (294), Expect = 1e-153
Identities = 380/421 (90%), Gaps = 8/421 (2%)
Strand=Plus/Plus
Query 515 GTGATCAGTATGCGAATAGTAATAGTGGGAGT-TGTATGTATGGATGCAAAGCTAAAGCT 573
||||||||||||| || || ||| ||| | |||||||||||||||||||||||||||
Sbjct 457 GTGATCAGTATGCAAACAGCAATTCCGGG-TTCTGTATGTATGGATGCAAAGCTAAAGCT 515
Query 574 ATGGCGCTTACGAAATACTGTCAGCTGCATATTCTTAAGGATAGTAAGCAGAAGCTCTAC 633
||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 516 ATGGCGCTTACCAAATACTGTCAATTGCATATTCTCAAGGATAGTAAGCAGAAGCTCTAC 575
Query 634 ACTGGTTGTACAAACGTCATTAAAC-GAGCTCCAGCAGGACCATTACTTTGTGGAAAACC 692
|||||||| |||||||||| | ||| || |||||||||||||||||||||||||||||||
Sbjct 576 ACTGGTTGCACAAACGTCA-TCAACAGATCTCCAGCAGGACCATTACTTTGTGGAAAACC 634
Query 693 AACACTTGGGTCGACTGTTCCTGTACTCTGTAATGTACACTTCCAGAAAGCCCAAAAGCA 752
|||||| | ||||||||||||||||| ||||| || |||| ||||||||| || ||| |
Sbjct 635 AACACTAGCATCGACTGTTCCTGTACTGTGTAACGTGCACTACCAGAAAGCACAGAAGAA 694
Query 753 TGTTGCTAAAGCTTTAAAGGATGCTGGTCACAATGTCTCTTCAACAAGCAAGCCTCCCCC 812
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 695 TGTTGCCAAAGCTTTAAAAGATGCTGGTCACAATGTCTCTTCAACAAGCAAGCCTCCCCC 754
Query 813 GAAGCTCCATGTTATAGTAGCTGCGTTTGTGCATCATATTCAAGCA-AAACGAAAAAATC 871
||||||||||||||||||||||| ||||||||||| ||||||||| ||| |||||||||
Sbjct 755 AAAGCTCCATGTTATAGTAGCTGCATTTGTGCATCACATTCAAGCACAAA-GAAAAAATC 813
Query 872 CACACAAGGATTGTAAACTTAAAAGTGTAGTAAAAGAAGAAAAT-ACAAGCTGAGTCAAG 930
|||| ||||| |||||||||||||||||||||| ||||||| | |||||||||||||||
Sbjct 814 CACATAAGGAGGGTAAACTTAAAAGTGTAGTAAAGGAAGAAA-TGACAAGCTGAGTCAAG 872
Query 931 C 931
|
Sbjct 873 C 873
Score = 448 bits (242), Expect = 8e-125
Identities = 375/437 (86%), Gaps = 18/437 (4%)
Strand=Plus/Plus
Query 1 CCGACGACGGCAATGGCGTCAGCTTCCAAGAACATTCAGCAAAACCCTTTCTCCTCGAAA 60
||| ||||| |||||||||||||| ||||||||| | |||||||||||||||||| ||||
Sbjct 9 CCGGCGACGACAATGGCGTCAGCTGCCAAGAACACTGAGCAAAACCCTTTCTCCTTGAAA 68
Query 61 CCGCCAAGGCCTCCGTCTTCCTCCGGCGCTGCATCTACTTCCGCCGTGGCTTCCACCTCA 120
|| ||||| ||||||||||||||| |||||||||| | |||| ||||||||||| |||
Sbjct 69 CCCCCAAGACCTCCGTCTTCCTCCAACGCTGCATCTTCCACCGCTGTGGCTTCCACTTCA 128
Query 121 GCCGAGCCCCAAATACGGAACCCTACCTCAAACCCTAGCCCTAGCACAAACGTTTTACCG 180
| || |||||||| ||||| | ||| || | |||||||||||||| |||||
Sbjct 129 GTTGAACCCCAAATTCGGAA--C--CCT--AA----A--CCTAGCACAAACGTCTTACCA 176
Query 181 TCGACTTCGAATTTACCGATTACGATGTCACAAGAAGATGAAATCCTCGCACTTTCCAGT 240
||||| ||||||| |||||||||||||| |||||||||||||||||||||| || |||
Sbjct 177 TCGACCTCGAATTCACCGATTACGATGTTACAAGAAGATGAAATCCTCGCAAGCTCTAGT 236
Query 241 CACCTAACCCGCCCGGAGCTTCTCC-ATCGCCG-GTCACG-CAACCTAAAGCAGCTCGCC 297
||||| || ||||| |||||||||| | ||||| | || | ||||||||||||||| |||
Sbjct 237 CACCTCACACGCCCAGAGCTTCTCCGA-CGCCGAG-CA-GACAACCTAAAGCAGCTGGCC 293
Query 298 AAGTGTTATAGAGACAATTATTGGGCTATAATGGAGGATGTCAAGGCGCAACACAGGGAT 357
|||||||||| | || ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 294 AAGTGTTATAAAAACCATTATTGGGCTTTAATGGAGGATCTCAAGGCGCAACACAGGGAT 353
Query 358 TATTGGTGGAAGTATGGGATTAGTCCGTTTAAAGACGAACAGAACCAATCGAATAAGAGA 417
|||||||| ||||||||| |||||| ||||||||||||||| || |||||||||||||||
Sbjct 354 TATTGGTGTAAGTATGGGGTTAGTCAGTTTAAAGACGAACAAAATCAATCGAATAAGAGA 413
Query 418 CGGAGGCTTGGTCAAGA 434
|||||||||| || |||
Sbjct 414 CGGAGGCTTGATCCAGA 430
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59939450730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5