BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482088
Length=1045
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31610.1 | Symbols: | Ribosomal protein S3 family protein |... 1655 0.0
AT3G53870.1 | Symbols: | Ribosomal protein S3 family protein |... 1033 0.0
AT5G35530.1 | Symbols: | Ribosomal protein S3 family protein |... 819 0.0
> AT2G31610.1 | Symbols: | Ribosomal protein S3 family protein
| chr2:13450302-13451923 FORWARD LENGTH=1089
Length=1089
Score = 1655 bits (896), Expect = 0.0
Identities = 999/1047 (95%), Gaps = 13/1047 (1%)
Strand=Plus/Plus
Query 1 TGATAACGAACACGAGCTTACCGATTCTCTTTCGTCTCAACATTTAGGGTTTCAGAGATC 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 TGATAACGAACACGAGCTTACCGATTCTC-TTCGTCTCAACATTTAGGGTTTCAGAGATC 59
Query 61 GGCTTCCGATTTTCACATCCACAAACATGGCGACTCAAATCAGCAAGAAGAGAAAGTTTG 120
||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 60 GGC-T--GATTTTCACATCCACAAGTATGGCGACTCAAATCAGCAAGAAGAGAAAGTTTG 116
Query 121 TAGCAGATGGTGTATTCTACGCTGAATTGAATGAAGTTCTCACCAGAGAGCTTGCAGAGG 180
|||| ||||||||||||||||||||||||||||| |||||||| |||||||| |||||||
Sbjct 117 TAGCGGATGGTGTATTCTACGCTGAATTGAATGAGGTTCTCACAAGAGAGCTAGCAGAGG 176
Query 181 ATGGTTACTCTGGTGTTGAAGTTAGGGTTACTCCAATGAGGACTGAGATTATCATCAGAG 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 177 ATGGTTACTCTGGTGTTGAGGTTAGGGTTACTCCAATGAGGACTGAGATTATCATCAGAG 236
Query 241 CTACACGTACTCAGAATGTTCTCGGTGAGAAGGGGAGGAGAATTAGGGAATTGACATCTC 300
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 237 CTACTCGTACTCAGAATGTTCTTGGTGAGAAGGGGAGGAGAATTAGGGAATTGACATCTC 296
Query 301 TTGTCCAGAAGAGATTCAAGTTTCCTGTTGACAGTGTTGAGCTTTATGCTGAAAAGGTTA 360
||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 297 TTGTCCAGAAGAGATTCAAGTTTCCAGTTGACAGTGTTGAGCTCTATGCTGAGAAGGTTA 356
Query 361 ACAACAGAGGTCTCTGTGCCATTGCTCAGGCTGAGTCTCTACGTTACAAGCTTCTTGGTG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 357 ACAACAGAGGTCTCTGTGCCATTGCTCAGGCTGAGTCTCTACGTTACAAGCTTCTCGGTG 416
Query 421 GTCTTGCTGTTCGCAGGGCCTGTTATGGTGTTTTGAGATTTGTTATGGAGAGTGGAGCTA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GTCTTGCTGTTCGCAGGGCCTGTTATGGTGTTTTGAGATTTGTTATGGAGAGTGGAGCTA 476
Query 481 AGGGATGCGAGGTCATCGTGAGTGGAAAGCTCCGTGCTGCACGTGCTAAGTCGATGAAGT 540
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 477 AGGGATGTGAGGTCATCGTGAGTGGAAAGCTCCGTGCTGCACGTGCTAAGTCCATGAAGT 536
Query 541 TCATGGATGGTTACATGGTTTCATCTGGTCAACCAACTAAGGAATACATTGACT-CTGCA 599
||| ||||||||||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct 537 TCAAGGATGGTTACATGGTTTCATCTGGTCAACCAACTAAGGAATACATCGA-TGCTGCA 595
Query 600 GTGAGACATGTTTTGCTTAGACAGGGGGTGTTGGGAATCAAGGTGAAGATCATGCTTGAT 659
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 596 GTGAGACATGTTTTGCTCAGACAGGGGGTGTTGGGAATCAAGGTGAAGATCATGCTTGAC 655
Query 660 TGGGACCCTACGGGCAAATCAGGACCAAAGACACCATTGCCTGATGTTGTGATCATTCAT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 TGGGACCCTACGGGCAAATCAGGACCAAAGACACCATTGCCTGATGTTGTGATCATTCAT 715
Query 720 GCTCCTAAAGATGATGTTGTCAACATC-GCGCCTGCTCAGGTTGCTGCTCCAGTTACTCT 778
||||||||||||||||||||| || || || |||||||||| ||||||||||||||||||
Sbjct 716 GCTCCTAAAGATGATGTTGTCTAC-TCTGCACCTGCTCAGGCTGCTGCTCCAGTTACTCT 774
Query 779 TGTGCCAGAGGCTCCACTCACAACCGTAGATTACCCTGAGATGATTCCTCCAGTGGCCTA 838
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 TGTGCAAGAAGCTCCACTCACAACCGTAGATTACCCTGAGATGATTCCTCCAGTGGCCTA 834
Query 839 GAGAAGACCtttttttACTATTACTCCATGGGATCTTGTTCTTTTTGTTATAACTTTGCT 898
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 835 GAGAAGACCTTTTTT-ACTATTACTCCATGGGATTTTGTTCTTTTTGTTATAACTTTTCT 893
Query 899 ACTTCTTTTGACAGTCGCTAGTCGTATCTCTTATATCCTCAAAGCAGTCGAGTTTTTTCT 958
|||| || |||| || ||||||||||||||||||||||| |||||| | ||||||||||
Sbjct 894 ACTT-TT--GACACTCTCTAGTCGTATCTCTTATATCCTCCAAGCAGACAAGTTTTTTCT 950
Query 959 CATGTTGTTTCTTAACCTATGTCAAAGTTTTGTGGAGGTTGAATGCTTTTAGTTCCATGA 1018
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 951 CATGTTGTTTCTTAACCTATGTCAA-GTTTTCTGGAGGTTGAATGCTTTTAGTTCCATGA 1009
Query 1019 ATTTTTTGGTCTTAAGACTCTTAATAA 1045
||||||| ||||||||||| ||||||
Sbjct 1010 TTTTTTTGTTCTTAAGACTCGTAATAA 1036
> AT3G53870.1 | Symbols: | Ribosomal protein S3 family protein
| chr3:19951488-19952961 FORWARD LENGTH=988
Length=988
Score = 1033 bits (559), Expect = 0.0
Identities = 721/799 (90%), Gaps = 12/799 (2%)
Strand=Plus/Plus
Query 43 TTTAGGGTTTCAGAGATCGGCTTCCGATTTTCACATCCACAAACATGGCGACTCAAATCA 102
|||||||||||||| || || | |||| |||||| |||||||| ||||||| ||||
Sbjct 19 TTTAGGGTTTCAGATATAGG---CAGATTCTCACATTTGCAAACATGACGACTCAGATCA 75
Query 103 GCAAGAAGAGAAAGTTTGTAGCAGATGGTGTATTCTACGCTGAATTGAATGAAGTTCTCA 162
|||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||| |
Sbjct 76 GCAAGAAGAGAAAGTTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTA 135
Query 163 CCAGAGAGCTTGCAGAGGATGGTTACTCTGGTGTTGAAGTTAGGGTTACTCCAATGAGGA 222
| |||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 136 CAAGAGAGCTAGCAGAGGATGGTTACTCTGGTGTTGAGGTTAGGGTTACTCCTATGAGGA 195
Query 223 CTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGGTGAGAAGGGGAGGAGAA 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 CTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGGTGAGAAGGGGAGGAGAA 255
Query 283 TTAGGGAATTGACATCTCTTGTCCAGAAGAGATTCAAGTTTCCTGTTGACAGTGTTGAGC 342
||||||||||||| || ||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 256 TTAGGGAATTGACTTCCCTTGTTCAGAAGAGATTCAAGTTTCCAGTTGACAGTGTTGAGC 315
Query 343 TTTATGCTGAAAAGGTTAACAACAGAGGTCTCTGTGCCATTGCTCAGGCTGAGTCTCTAC 402
||||||| || ||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 316 TTTATGCCGAGAAGGTTAACAACAGAGGTCTCTGTGCCATCGCTCAGGCTGAGTCTTTAC 375
Query 403 GTTACAAGCTTCTTGGTGGTCTTGCTGTTCGCAGGGCCTGTTATGGTGTTTTGAGATTTG 462
|||||||||||||||||||||| |||||||| ||||| || |||||||| ||||| ||||
Sbjct 376 GTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGGGCTTGCTATGGTGTGTTGAGGTTTG 435
Query 463 TTATGGAGAGTGGAGCTAAGGGATGCGAGGTCATCGTGAGTGGAAAGCTCCGTGCTGC-A 521
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 436 TTATGGAGAGTGGAGCTAAGGGATGCGAGGTTATCGTGAGTGGAAAGCTTCGTGCTGCCA 495
Query 522 CGTGCTAAGTCGATGAAGTTCATGGATGGTTACATGGTTTCATCTGGTCAACCAACTAAG 581
| || ||||| |||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 496 -GAGCCAAGTCTATGAAGTTCAAAGATGGCTACATGGTGTCATCTGGTCAACCAACTAAG 554
Query 582 GAATACATTGACTCTGCAGTGAGACATGTTTTGCTTAGACAGGGGGTGTTGGGAATCAAG 641
|||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 555 GAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAGGTGTGTTGGGAATCAAG 614
Query 642 GTGAAGATCATGCTTGATTGGGACCCTACGGGCAAATCAGGACCAAAGACACCATTGCCT 701
|||||| | ||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 615 GTGAAGGTTATGCTTGATTGGGACCCTAAGGGCATATCAGGACCAAAGACACCATTGCCT 674
Query 702 GATGTTGTGATCATTCATGCTCCTAAAGATGATGTTGTCAAC-ATCGCGCCTGCTCAGGT 760
|||||||||||||||||| |||||||||| || | | || | || || |||||||||||
Sbjct 675 GATGTTGTGATCATTCATTCTCCTAAAGAAGAAGAGGCCATCTAT-GCACCTGCTCAGGT 733
Query 761 TGCTGCTCCAGTTACTCTTGT-GCCAGAGGCTCCACTCACAACCGTAGATTACCCTGAGA 819
|||||| || | | |||| || || ||| || ||||||||| ||||||||||||||| ||
Sbjct 734 TGCTGCCCCGGCTGCTCTCGTAGC-AGATGCACCACTCACAGCCGTAGATTACCCTGCGA 792
Query 820 TGATTCCTCCAGTGGCCTA 838
|||| || | ||| |||||
Sbjct 793 TGAT-CC-C-AGTCGCCTA 808
> AT5G35530.1 | Symbols: | Ribosomal protein S3 family protein
| chr5:13710111-13712288 REVERSE LENGTH=1087
Length=1087
Score = 819 bits (443), Expect = 0.0
Identities = 641/737 (87%), Gaps = 12/737 (2%)
Strand=Plus/Plus
Query 81 ACAAACATGGCGACTCAAATCAGCAAGAAGAGAAAGTTTGTAGCAGATGGTGTATTCTAC 140
|||| ||||||||| || |||||||||||||||||||| ||||| |||||||| || |||
Sbjct 91 ACAATCATGGCGACCCAGATCAGCAAGAAGAGAAAGTTCGTAGCCGATGGTGTGTTTTAC 150
Query 141 GCTGAATTGAATGAAGTTCTCACCAGAGAGCTTGCAGAGGATGGTTACTCTGGTGTTGAA 200
|||||| | ||||| ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 151 GCTGAACTCAATGAGGTTCTAACCAGAGAGCTTGCTGAGGATGGTTACTCTGGTGTTGAG 210
Query 201 GTTAGGGTTACTCCAATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTT 260
||| | || ||||| ||| | |||||||| ||||| ||||| || |||||||| || |||
Sbjct 211 GTTCGCGTCACTCCTATGCGTACTGAGATCATCATTAGAGCCACTCGTACTCAAAACGTT 270
Query 261 CTCGGTGAGAAGGGGAGGAGAATTAGGGAATTGACATCTCTTGTCCAGAAGAGATTCAAG 320
|||||||||||||| ||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 271 CTCGGTGAGAAGGGAAGGAGGATTAGGGAATTGACATCTCTTGTACAAAAGAGATTCAAA 330
Query 321 TTTCCTGTTGACAGTGTTGAGCTTTATGCTGAAAAGGTTAAC-AACAGAGGTCTCTGTGC 379
|||||| ||||||||||||||||||||||| |||||| | ||||||||||| |||||
Sbjct 331 TTTCCTCAGGACAGTGTTGAGCTTTATGCTGAGAAGGTT-GCTAACAGAGGTCTTTGTGC 389
Query 380 CATTGCTCAGGCTGAGTCTCTACGTTACAAGCTTCTTGGTGGTCTTGCTGTTCGCAGGGC 439
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 390 TATTGCTCAGGCTGAGTCTCTTCGTTACAAGCTTCTTGGTGGTCTTGCTGTTCGTAGGGC 449
Query 440 CTGTTATGGTGTTTTGAGATTTGTTATGGAGAGTGGAGCTAAGGGATGCGAGGTCATCGT 499
|| ||||||||||| || ||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 450 GTGCTATGGTGTTTTAAGGTTTGTTATGGAGAGTGGAGCTAAAGGATGCGAAGTCATTGT 509
Query 500 GAGTGGAAAGCTCCGTGCTGCACGTGCTAAGTCGATGAAGTTCATGGATGGTTACATGGT 559
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 510 GAGTGGAAAACTCCGTGCTGCACGTGCTAAGTCGATGAAGTTCAAGGATGGTTACATGGT 569
Query 560 TTCATCTGGTCAACCAACTAAGGAATACATTGACT-CTGCAGTGAGACATGTT-TTGCTT 617
||| || ||||| ||||| |||||||||||||| | ||||||| || |||||| || |||
Sbjct 570 TTCCTCAGGTCAGCCAACCAAGGAATACATTGA-TGCTGCAGTTAGGCATGTTCTT-CTT 627
Query 618 AGACAGGGGGTG-TTGGGAATCAAGGTGAAGATCATGCTTGATTGGGACCCTACGGGCAA 676
|||||||| ||| |||| |||||||||||||||||||||| |||||||| | ||||||
Sbjct 628 AGACAGGGTGTGCTTGGTC-TCAAGGTGAAGATCATGCTTGACTGGGACCCCAAGGGCAA 686
Query 677 ATCA-GGACCAAAGACACCATTGCCTGATGTTGTGATCATTCATGCTCCTAAAGATGATG 735
| || ||||| | ||||||||||||||||||||||||||| ||| | || ||||| ||||
Sbjct 687 A-CAAGGACCGATGACACCATTGCCTGATGTTGTGATCATCCATACACCGAAAGAAGATG 745
Query 736 TTGTCA-ACATCGCGCCTGCTCAGGTTGCTGCTCCAGTTACTCTTGTGCCAGAGGCTCCA 794
||| | |||| || ||||||||||||| | ||| || | || |||| || || ||||||
Sbjct 746 ATGT-ATACATTGCACCTGCTCAGGTTGTTACTCAAGCTGCTTTTGTACCGGAAGCTCCA 804
Query 795 CTCACAACCGTAGATTA 811
| || ||| ||||||
Sbjct 805 TTAACCACCACAGATTA 821
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51238829940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5