BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482092
Length=957
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31670.1 | Symbols: | Stress responsive alpha-beta barrel d... 1227 0.0
AT1G51360.1 | Symbols: ATDABB1, DABB1 | dimeric A/B barrel doma... 363 2e-99
> AT2G31670.1 | Symbols: | Stress responsive alpha-beta barrel
domain protein | chr2:13472537-13473504 REVERSE LENGTH=968
Length=968
Score = 1227 bits (664), Expect = 0.0
Identities = 874/971 (90%), Gaps = 31/971 (3%)
Strand=Plus/Plus
Query 1 ATGATATGCGCAAGAATCCGACCGCTAATTTCGTCACCATTAGCCTTCACTATCTCCGCA 60
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||
Sbjct 15 ATGATATGCGCAAGAATCCGACCGCTAATTTCGTCACCACTAGCTTTCACTATCTCAACA 74
Query 61 ACTAAACACTCTC-CAATCAATCTCCGATTATTCCCTCGTCGCTCCTTCTCCGCCGTAAC 119
|| |||||||| | |||||||||||||||| ||||||| |||||||||| ||||
Sbjct 75 ACCAAACACTC-CAGAATCAATCTCCGATTACTCCCTCGCCGCTCCTTCT---CCGT--- 127
Query 120 CGCCATGTCTTCTTCAACCCCACCGAGTCAGATCATAGAACACATCGTCTTTTTCAAAGC 179
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
Sbjct 128 ---CATGTCTTCTTCAACCCCACAGAGTCAGATCATAGAACACATCGTCTTATTCAAAAC 184
Query 180 CAAAGACGACGCTGACTCCAACAAAATCACTTCCATGATCAACAACCTCAACGCTCTTGC 239
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 185 CAAAGACGACGCTGACTCCACCAAAATCACCTCCATGATCAACAACCTCAACGCTCTTGC 244
Query 240 CTCTCTCGATCAAGTGCTTCACATCTCCACCGCTCCTCTCCACCGTCTTGGATCCTCCGC 299
| |||||||||||||||||||||||||||| |||||||||||||| | ||||||||
Sbjct 245 ATATCTCGATCAAGTGCTTCACATCTCCACCTCTCCTCTCCACCGT-AT--CTCCTCCGC 301
Query 300 CGTCACCTTCACTCACGTCCTCCATAGCCGTTACGGATCTAAAGAAGATCTTGCCTCCTA 359
| ||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||
Sbjct 302 TACCGCCTTCACTCACGTACTCCATAGCCGTTACGAATCTAAAGAAGATCTAGCCTCCTA 361
Query 360 CGGTGCACATCCAGATCACGTTCGTGTTGTTAAGGAATCTGTGTTACCGGTCTGCGACGA 419
|| |||||||||||||||||||||||||||||||||||||||||||||| |||| || ||
Sbjct 362 CGCTGCACATCCAGATCACGTTCGTGTTGTTAAGGAATCTGTGTTACCGATCTGTGATGA 421
Query 420 CATCATGGCTGTTGATTGGATCGCCGATCGAGTCCCCGGAACCCTAGCGCCGCCTCCTGG 479
||||||||||||||||||||||| |||||| ||||||||||| ||||||||| ||||||
Sbjct 422 TATCATGGCTGTTGATTGGATCGCTGATCGAATCCCCGGAACCGTAGCGCCGCTTCCTGG 481
Query 480 TTCGGTTGCGAAACTCACGCTACTTAAATTGAAAGAGAATCTCTCCGATGAGGCGAAATC 539
||||||||| |||||||| | || |||||||||||| || | | ||||||||||||||
Sbjct 482 TTCGGTTGCTAAACTCACATTGCTCAAATTGAAAGAGGATGTAGCAGATGAGGCGAAATC 541
Query 540 GGAGATTACGGGAGTGATTAAGGGACTAAGTGAGAAATTTCCAGGAATTGATCAGATTAC 599
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 542 GGAGATTACGGGAGTGATTAAGGGACTAAGTGAGAAATTTCCAGGGATTGATCAGATTAC 601
Query 600 TGTTGGAGAAAACTTTTCTCCAGCTAGAGCTAAAGGTTTCACTATTGCTTCGATTGCGTA 659
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 602 TGTTGGAGAAAACTTTTCTCCTGCTAGAGCTAAAGGTTTCTCTATTGCTTCGATTGCGTA 661
Query 660 CTTCAAGAATTTGAGTGAAATGGAAGCTGTGGATGCTCAGAAGGAGTTGGTGAATTCGCA 719
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 662 TTTCAAGGATTTGAGTGAAATGGAAGCTGTGGATGCTCAGAAAGAGTTGGTGAATTCGCA 721
Query 720 AAAGGATAAGGTTCGTGATTATGTGGATTCTACCATTGTTGTTGAGTTCGTGGTGCCGTC 779
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 722 AAAGGATAAGGTTCGTGATTATGTGGATTCTACCATTGTTGTTGAGTTCGTTGTGCCGTC 781
Query 780 TTTTTCACAGTCTTCTAGTCTGTaaaaaaaGGTTCAATTTCAATCCTTTGAACA-CTTTG 838
|| ||||||||||||||||||||| ||| | |||||||||||||| ||||| | |||||
Sbjct 782 TTCTTCACAGTCTTCTAGTCTGTAGAAA--GTTTCAATTTCAATCCCTTGAA-AGCTTTG 838
Query 839 GGACCTATTTGTCACTTGAGAATAAAGAAATTTGAGTGTGATGATGATATA-TGCT-TTT 896
|||||| ||||| | ||||||||||||||| |||||||||||||| |||| | || |||
Sbjct 839 GGACCTGTTTGTTATTTGAGAATAAAGAAACTTGAGTGTGATGAT-ATATGCTTCTGTTT 897
Query 897 G-TT-T-TTCC---CT-T---TGAGGAACTCTGTTGGAATAAGATTTTTTAAGCAGAAAG 946
|| | ||| || | ||||||||||||||||||||||| |||||||||| |||
Sbjct 898 CATTATCTTCTTATCTCTCGGTGAGGAACTCTGTTGGAATAAGAATTTTTAAGCACTAAG 957
Query 947 AAACTTTGAGC 957
|||||||||||
Sbjct 958 AAACTTTGAGC 968
> AT1G51360.1 | Symbols: ATDABB1, DABB1 | dimeric A/B barrel domainS-protein
1 | chr1:19044184-19044900 FORWARD LENGTH=717
Length=717
Score = 363 bits (196), Expect = 2e-99
Identities = 492/628 (78%), Gaps = 47/628 (7%)
Strand=Plus/Plus
Query 184 GACGACGCTGACTCCAACAAAATC-ACTTCCATGATCAAC--AACCTCAACGCTCTTGCC 240
||||||| ||||||| ||| ||| || |||||| ||||| || |||||| || | |
Sbjct 70 GACGACGTTGACTCCGGCAAGATCAAC-TCCATGGTCAACGGAA--TCAACGAACTAGTC 126
Query 241 TCTCTCGATCAAGTGCTTCACATCTCCACCGCTCCTCTCCACCGTC-T-T--GGATCCTC 296
|||||| |||||||||||| ||| | || | | ||||||| | | | || || |
Sbjct 127 AATCTCGACCAAGTGCTTCACCTCTACTGCGGTTCAATCCACCGCCTTATCACGA-CCAC 185
Query 297 CGCCGT-C-ACCTTCACTCACGTCCTCCATAGCCGTTACGGATCTAAAGAAGATCTTGCC 354
|||| | | | ||||||||||||||| |||||||||||| |||| ||||||||||| |
Sbjct 186 CGCC-TCCGA-CTTCACTCACGTCCTTCATAGCCGTTACAGATCCAAAGAAGATCTCAAC 243
Query 355 TCCTACGGTGCACATCCAGATCACGTTCGTGTTGTTAAGGAATCTGTGTTACCG-GTCTG 413
| |||| | |||||| ||||||||||||||||| |||||||| | | || || |
Sbjct 244 GCTTACGCTATACATCCCGATCACGTTCGTGTTGTCAAGGAATC--AG-AATCGATTC-G 299
Query 414 CGACGACATCATGGCTGTTGATTGGATCGCCGATCGAGTCCCCGGAA-CCCTAGCGCCGC 472
||| || |||||||| ||||||||||||||||| | || | |||||| ||||||| ||||
Sbjct 300 CGAAGATATCATGGCCGTTGATTGGATCGCCGAACAAG-CTCCGGAAGCCCTAGCACCGC 358
Query 473 CTCCTGGTTCGGTTGCG-AAACTCACGCTACTTAAATTGAAAGAGAATCTC-TCCGATGA 530
||| |||||| ||| | ||| ||||||| |||||||||||||||||| || | || ||
Sbjct 359 CTCTTGGTTCAATTG-GTAAAATCACGCTTCTTAAATTGAAAGAGAATGTCAT-GGAAGA 416
Query 531 GGCGAAATCGGAGATTACGGGAGTGATTAAGGGACTAAGTGAGAAATTTCCAGGAATTGA 590
||||||| |||||||| || ||||| | | ||| ||||||||| |||||||||
Sbjct 417 AGCGAAATTGGAGATTATGGAAGTGA-T----G---AAG-GAGAAATTTGAAGGAATTGA 467
Query 591 TCAGATTACTGTTGGAGAAAACTTTTCTCCAGCTAGAGCTAAAGGTTTCACTATTGCTTC 650
|||||||||||||||||||||||||||||| | ||| |||||| |||| |||||| ||
Sbjct 468 TCAGATTACTGTTGGAGAAAACTTTTCTCCGGGGAGATCTAAAGATTTCTCTATTGGATC 527
Query 651 GATTGCGTACTTCAAGAATTTGAGTGAAATGGAAGCTGTGGATGCTCAGAAGGAGTTGGT 710
|||| |||| || | | ||||| ||||||| || |||||||||| ||||| | |||||
Sbjct 528 GATTTCGTATTTTAGGGATTTGGGTGAAATTGAGGCTGTGGATGATCAGATGAAGTTGCA 587
Query 711 GAATTCGCAAAAGGATAAGGTTCGTGATTATGTGGATTCTACCATTGTTGTTGAGTTCG- 769
|||| | | ||| || | ||||||||||| ||| |||||||||||||||||||
Sbjct 588 GAAT--G-ATAAG-AT----T-CGTGATTATGTTGATGATACCATTGTTGTTGAGTTCAA 638
Query 770 TGGTGCCGTCTTTTTCACA-GTCTTCTA 796
|| ||||||||| |||| | ||||||||
Sbjct 639 TG-TGCCGTCTTCTTCATAAGTCTTCTA 665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46818225004
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5