BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482095
Length=622
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31725.1 | Symbols: | Eukaryotic protein of unknown functio... 955 0.0
> AT2G31725.1 | Symbols: | Eukaryotic protein of unknown function
(DUF842) | chr2:13486317-13487445 REVERSE LENGTH=634
Length=634
Score = 955 bits (517), Expect = 0.0
Identities = 591/626 (94%), Gaps = 7/626 (1%)
Strand=Plus/Plus
Query 1 AGCTAAAACCCTAAAGCCCTGAAATCAAAGTTAAGCTAAGCAGAGAAGGAGACGATGGAT 60
|||||||||||||||||||| |||||||| ||| ||||| ||||||||| ||| ||||||
Sbjct 1 AGCTAAAACCCTAAAGCCCTAAAATCAAAATTACGCTAAACAGAGAAGGCGACAATGGAT 60
Query 61 CACATCGCTGCGGCGGAGGAGCAAATCGTATCGGAGAGGCTTCGAAGAAAGCTTCAAGAA 120
||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||
Sbjct 61 CACATCGCTGCGGCGGAAGAGCAAATCGTATCGGAGAGACTTCGAAGAAAGCTTGAAGAA 120
Query 121 GTTAATGCAGCTGCTCAGACTCAGCTTTCTCCTATCCAAGATCACATCAATTTCACCCTC 180
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTTAATGTAGCTGCTCAGACTCAGCTTTCTCCTATCCAAGATCACATCAATTTCACCCTT 180
Query 181 CAGCAAGCTTATTTCAAATGTGCATATGAGTGCTTTGACAGAAGAAGAAAGCAAGAGGAG 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 CAGCAAGCTTATTTCAAATGTGCATATGAGTGCTTTGATAGAAGAAGAAAGCAAGAGGAG 240
Query 241 ATAAGTAACTGTGTTGAGCACTGCAGTGTTCCCGTTGTCAAATCTCAACAGTATTTCGAG 300
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATAAGTAACTGCGTCGAGCACTGCAGTGTTCCCGTTGTCAAATCTCAACAGTATTTCGAG 300
Query 301 AACGAAATGGCTCAGTTTCAGGAAAGATTGAACAGGTCACTGGTGGTGTGTCAAGACAAG 360
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 AACGAAATGGCTCAATTTCAGGAAAGATTGAACAGATCACTGGTGGTGTGTCAAGACAAG 360
Query 361 TTTGAGGCCTCAAAGCTCCAGAAGATAAGGCCTGAAGCGATTAACGAGATGGAGAGTTGC 420
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 361 TTTGAGGCCTCAAAGCTCCAGAAGATAAGGCCTGAAGCGGTTAACGAGATGGAGAGTTGT 420
Query 421 GTGCACAAATCCATTGAGGAAAATCTCAATACATTACCACATATTGTGCAGAGAATGAAG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTGCACAAATCCATTGAGGAAAATCTCAATACATTACCACATATTGTGCAGAGAATGAAG 480
Query 481 -CAAGCATTTAACATAACCAACTAAA-GCTCTCGTGCAAACCCTTGGATTCCGGAACTTG 538
|| |||||||||||||||||||||| ||||||||| ||| ||||||||||| |||||||
Sbjct 481 ACA-GCATTTAACATAACCAACTAAAAGCTCTCGTGAAAAACCTTGGATTCCAGAACTTG 539
Query 539 ACTGGGCCAT-T-GTTTGAAAAGACCTTTTGTGTTTGTCTTAATATGATCTATAAATTTG 596
||| | |||| | ||||||||||||||||| | ||||||||||||||||||| |||||||
Sbjct 540 ACTAG-CCATATTGTTTGAAAAGACCTTTTCT-TTTGTCTTAATATGATCTACAAATTTG 597
Query 597 TTTTACTTTTCCTTATATAAAGGTTT 622
|||| ||||| ||||||| ||| |||
Sbjct 598 TTTTCCTTTTTCTTATATTAAGTTTT 623
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29989785759
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5