BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482096
Length=907
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31730.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1291 0.0
AT1G05710.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 289 4e-77
> AT2G31730.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:13487568-13489679 REVERSE
LENGTH=1020
Length=1020
Score = 1291 bits (699), Expect = 0.0
Identities = 854/925 (92%), Gaps = 26/925 (3%)
Strand=Plus/Plus
Query 1 CTCTTCTCTTTGCTTTCTTCTCTACAT--AA-TAAAACTCCTCTCTCTCACGACCCTTTG 57
||||| ||||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 1 CTCTTTTCTTTGCTTTCTTCTCTACATAAAACTAAAACTCCTCTCTTTCACGACCCTTTA 60
Query 58 AGTTACGACGCCGTTTTCATCCAAACACAAACCTCTGGATTCGTGTCACCGTAGAAGCTC 117
||| ||||||||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct 61 AGTAACGACGCCGTTTTCATCCAAACACAAACCTCTGGAATCGTGTCACCGTTGGAGCTC 120
Query 118 CGGC-TCTATTAAAGTCTTTCTTCAAGAACTGAAGACAAAATAAAG-AAAGAATATATAA 175
|||| || ||||| | |||||||||||| |||||||||||| |||| ||| ||||||||
Sbjct 121 CGGCTTC-ATTAATGGCTTTCTTCAAGACCTGAAGACAAAAGAAAGTAAA-AATATATAT 178
Query 176 ACACTAGAGAGACCAAGATCCTCGTTTATGGGTTTCATCGTG---T-T--TT---GTGAC 226
|||||||||||||||||||||||||||||||||||||||||| | | || |||||
Sbjct 179 ACACTAGAGAGACCAAGATCCTCGTTTATGGGTTTCATCGTGTCTTGTGCTTAGGGTGAC 238
Query 227 ATAAAAACCCATTTA-AAAGATTAGGACCAAGAAGTTTTCAGAGTTTGTGAAGTTA-TTG 284
||||| ||||||||| | || ||| |||||||||||||| |||||||||||||||| |||
Sbjct 239 ATAAATACCCATTTAGAGAGCTTA-GACCAAGAAGTTTT-AGAGTTTGTGAAGTTACTTG 296
Query 285 TTGGTTAGTGTGCTGTTTCTGGCAAATGCTGAGTCTCTTTTCTCTGAATGGAATACTCTA 344
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 297 TTGGTTAGTCTGCTGTTTCTGGCAAATGCTGAGTCTCTTCTCTCTGAATGGAATACTCTA 356
Query 345 GAGACTCGGCAGATATGATGATGGAGAATAAGCGCAATGTCTACTCTCTTGAAGAAAACA 404
||||||||||||| ||||||||||||| |||||||||||||||||| |||||||| ||||
Sbjct 357 GAGACTCGGCAGAGATGATGATGGAGACTAAGCGCAATGTCTACTCGCTTGAAGATAACA 416
Query 405 ACATCAAACGACACAAGTCGTCTGATCTCTCTTTCTCTTCCAAGGAGAGGAAGGACAAGT 464
| || |||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
Sbjct 417 AAATTAAACGACACAAGTCATCTGATCTCTCTTTCTCTTCCAAGGAGAGGAAAGACAAAT 476
Query 465 TGGGAGAACGTATTTCAGCTCTTCAACAACTAGTTTCCCCTTACGGAAAGACCGACACTG 524
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TAGCAGAACGTATTTCAGCTCTTCAACAACTAGTTTCCCCTTACGGAAAGACCGACACTG 536
Query 525 CATCAGTTCTTCTAGAGGGAATGCAATACATTCAGTTTCTTCAAGAACAAGTCAAGGTTC 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CATCAGTTCTTCTAGAGGGAATGCAATACATTCAGTTTCTTCAAGAACAAGTCAAGGTTC 596
Query 585 TAAGCGCTCCATATCTGCAAGCAACCCCCACTACTTC-GCAGGAGGAACTCGAAGAGTAC 643
|||| ||||| ||||||||||||||||| ||||| | | |||||||| | |||||||||
Sbjct 597 TAAGTGCTCCTTATCTGCAAGCAACCCCTTCTACTACAG-AGGAGGAAGTGGAAGAGTAC 655
Query 644 AGCCTAAGAAGCAAAGGGCTATGTCTTGTTCCATTGGAGTATACATCAGGAGTTGCTCAA 703
||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 656 AGCTTAAGAAGTAAAGGGCTATGTCTTGTTCCATTGGAGTATACATCAGAAGTTGCTCAA 715
Query 704 ACCAATGGTGCTGATATTTGGGCTCCTGTGAAGACTCCAACATCTTCTCATGCTTTTAAT 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 ACCAATGGTGCTGATATTTGGGCTCCTGTGAAGACTCCAACATCTTCTCATGCTTTTAAT 775
Query 764 CTCTCGTCTTCTAATTCGCCCTTTCGATGAT-TCCTGCTAAAATCTCTGTCTCAAGACTA 822
||||||||||||||||||||||||| |||| | |||||||| |||||||||||||||||
Sbjct 776 CTCTCGTCTTCTAATTCGCCCTTTCAATGAGCTGCTGCTAAATTCTCTGTCTCAAGACTA 835
Query 823 ATGAAGATTACCCAAAACTTTGGTCTGATCATGTATTGATGATGGAGAGACCTTGAAGTC 882
||||| |||| ||||| |||||||||||||||||||||||| | |||||||||||||||
Sbjct 836 ATGAAAATTAGCCAAAGCTTTGGTCTGATCATGTATTGATG--G-AGAGACCTTGAAGTC 892
Query 883 GGTGATGGCTGTTTCTGTTATTTTT 907
|||||||||||||||||||||||||
Sbjct 893 GGTGATGGCTGTTTCTGTTATTTTT 917
> AT1G05710.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:1714950-1717270 FORWARD LENGTH=1200
Length=1200
Score = 289 bits (156), Expect = 4e-77
Identities = 232/267 (87%), Gaps = 11/267 (4%)
Strand=Plus/Plus
Query 318 TCTCTTTTCTCTGAATGGAATACTCTAGAGACTCGGCAGATATGATGATGGAGAATAAGC 377
|||| | |||| | ||||||| |||||||||| | | || |||||||||||||||||||
Sbjct 425 TCTC-TCTCTCCGTATGGAATTCTCTAGAGACGCTG--GA-ATGATGATGGAGAATAAGC 480
Query 378 GCAATGTCTACTCTCTTGAAGAAAACAACATCAAACGACACAAGTCGTCTGATCTCTCTT 437
| ||||||| |||||| | ||||| || |||||||| ||||| ||||||||||||||
Sbjct 481 GGAATGTCTGCTCTCTCGGAGAAAGCAGTATCAAACGCCACAA---GTCTGATCTCTCTT 537
Query 438 TCTCTTCCAAGGAGAGGAAGGACAA-GTTGGGAGAACGTATTTCAGCTCTTCAACAACTA 496
|| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||
Sbjct 538 TCAGTTCCAAGGAGAGGAAGGACAAGGTT-GGAGAACGTATTTCAGCTCTTCAACAAATA 596
Query 497 GTTTCCCCTTACGGAAAGACCGACACTGCATCAGTTCTTCTAGAGG-GAATGCAATACAT 555
||||||||||| |||||||||||||||||||||||||||||||| | || |||| |||||
Sbjct 597 GTTTCCCCTTATGGAAAGACCGACACTGCATCAGTTCTTCTAGACGCGA-TGCATTACAT 655
Query 556 TCAGTTTCTTCAAGAACAAGTCAAGGT 582
|||||||||| |||||||| |||||
Sbjct 656 AGAGTTTCTTCACGAACAAGTGAAGGT 682
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44306517654
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5