BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482098
Length=1500
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31750.1 | Symbols: UGT74D1 | UDP-glucosyl transferase 74D1 ... 2241 0.0
AT2G31751.1 | Symbols: | unknown gene | chr2:13499341-13502114... 896 0.0
> AT2G31750.1 | Symbols: UGT74D1 | UDP-glucosyl transferase 74D1
| chr2:13497233-13500023 FORWARD LENGTH=1603
Length=1603
Score = 2241 bits (1213), Expect = 0.0
Identities = 1379/1460 (94%), Gaps = 7/1460 (0%)
Strand=Plus/Plus
Query 1 TTGTATGAAACAAATTTCAACaaaaagaaaagaaaaa-aaTGGGAGAGAAAGCGAGAGCA 59
||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||| ||||
Sbjct 41 TTGTATGTAACAAATTTCAACAAAAAGAAGAGAAAAACAATGGGAGAGAAAGCGAAAGCA 100
Query 60 AATGTGTTAGTCTTCTCATTTCCGATACAAGGACACATAAACCCTCTCCTCCAATTCTCA 119
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 101 AATGTGTTAGTCTTCTCATTTCCGATACAAGGTCACATAAACCCTCTCCTCCAATTCTCA 160
Query 120 AAACGTCTACTCTCCAAAAACGTTACCGTCACATTCCTCACCACTTCCTCCACCCACAAC 179
||||| |||||||| |||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 161 AAACGCCTACTCTCTAAAAACGTCAACGTCACATTCCTCACCACTTCCTCCACCCACAAC 220
Query 180 TCCATCCTCCGCCGTGCCATCGCCGGCGGAGCCACCGCTCTTCCGCTCTCTTTTGTCCCC 239
||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||
Sbjct 221 TCCATCCTCCGCCGTGCCATCACCGGCGGAGCCACTGCTCTTCCTCTCTCTTTTGTCCCC 280
Query 240 ATAGACGATGGCTTCGAGGAAGGTCACCCATCCACCGATACATCACCGGACTACTTCGCC 299
|| |||||||| |||||||||| ||||||||| || || ||||| || |||||||||||
Sbjct 281 ATTGACGATGGATTCGAGGAAGATCACCCATCTACGGACACATCTCCCGACTACTTCGCA 340
Query 300 AAGTTCCAAGAAAACGTCTCTCGAAGCCTCTCCGAACTTATCTCGTCGATGGAACCAAAA 359
||||||||||||||||| |||||||||||||| || |||||||| |||||||| ||||||
Sbjct 341 AAGTTCCAAGAAAACGTATCTCGAAGCCTCTCAGAGCTTATCTCCTCGATGGACCCAAAA 400
Query 360 CCAAACGCCGTCGTTTACGACTCGTGCCTGCCTTATGTTCTCGACGTTTGCCGGAAACAT 419
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 401 CCAAACGCCGTCGTTTACGACTCGTGCCTGCCTTATGTCCTCGACGTTTGCCGGAAACAT 460
Query 420 CCTGGCGTTGCTGCGGCGTCGTTTTTCACTCAGTCCTCCACCGTGAACGCAATCTATATT 479
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 461 CCTGGCGTTGCTGCGGCGTCGTTTTTCACTCAGTCCTCCACCGTGAACGCGACCTATATT 520
Query 480 CATTTCTTGCGTGGAGCGTTTAAGGAGTTTCAAAACGATGTCGTTTTGCCTGCGATGCCT 539
|||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 521 CATTTCTTGCGTGGAGAGTTTAAGGAGTTTCAAAATGATGTCGTTTTGCCTGCAATGCCT 580
Query 540 CCATTGAAGGGTCATGACTTGCCGGTGTTTCTGTACGATAACAATCTCTGCCGGCCGTTG 599
|| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 581 CCGCTGAAGGGTAATGACTTACCGGTGTTTCTGTACGATAACAATCTCTGCCGGCCGTTG 640
Query 600 TTTGAGCTGATTAGTAGCCAGTTCGTGAATGTCGATGACATTGACTTCTTCTTGGTTAAC 659
|||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 641 TTTGAGCTCATTAGTAGCCAGTTCGTGAATGTTGACGACATTGACTTCTTCTTGGTTAAC 700
Query 660 TCTTTCGACGAACTCGAAGTCGAGGTGCTAAAATGGATGAAGAACCAATGGCCGGTCAAG 719
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 701 TCTTTCGACGAACTCGAAGTCGAGGTGCTACAATGGATGAAAAACCAATGGCCGGTCAAG 760
Query 720 AACATAGGACCGATGATTCCATCAATGTACTTAGACAAACGGA-TAGCAGGCGACAAGGA 778
|||||||||||||||||||||||||||||||||||||||| || ||||||| ||||| ||
Sbjct 761 AACATAGGACCGATGATTCCATCAATGTACTTAGACAAAC-GATTAGCAGGTGACAAAGA 819
Query 779 CTACGGAATCAACCTCTTCAATGCCCAAGTTAACGAATGCCTTGATTGGCTTGACTCAAA 838
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 820 CTACGGAATCAACCTCTTCAATGCCCAAGTCAACGAATGCCTTGATTGGCTTGACTCAAA 879
Query 839 ACCGCCAGTTTCAGTGATCTACGTGTCTTTTGGTAGCTTAGCTGTCTTAAAGGACGATCA 898
|||||| | |||||||||||||||||||||||| ||||| || |||||||| ||||||||
Sbjct 880 ACCGCCCGGTTCAGTGATCTACGTGTCTTTTGGAAGCTTGGCCGTCTTAAAAGACGATCA 939
Query 899 AATGATAGAAGTCGCGGCTGGTCTAAAACAAACTGGCCATAACTTCTTATGGGTTGTCAG 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 940 AATGATAGAAGTCGCGGCTGGTCTAAAACAAACTGGCCATAACTTCTTATGGGTTGTTAG 999
Query 959 AGAAACCGAAACAAAGAAGCTCCCAAGCAATTACATAGAGGAAATTGGTGAAAAGGGATT 1018
|||||| |||||||||||||| |||||||||||||||||||| ||| |||| ||||||||
Sbjct 1000 AGAAACTGAAACAAAGAAGCTTCCAAGCAATTACATAGAGGACATTTGTGACAAGGGATT 1059
Query 1019 GATAGTTAACTGGAGTCCTCAATTACAAGTTCTTGCACATAAATCAGTCGGTTGTTTCAT 1078
|||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1060 GATAGTGAATTGGAGTCCTCAATTACAAGTTCTTGCACATAAATCAATCGGTTGTTTCAT 1119
Query 1079 GACTCATTGCGGGTGGAATTCGACTTTAGAGGCATTGAGCTTAGGAGTGGCTTTGATTGG 1138
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1120 GACTCATTGCGGGTGGAATTCGACTTTAGAGGCATTGAGCTTAGGAGTTGCTTTGATAGG 1179
Query 1139 AATGCCGGCTTATAGCGAACAACCGACTAATGCTAAGTTTATAGAAGATGTGTGGAAGGT 1198
|||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 1180 AATGCCGGCTTATAGCGACCAGCCGACTAATGCTAAGTTTATTGAAGATGTGTGGAAGGT 1239
Query 1199 TGGGGTTAGGGTTAAGGCAGATCATAATGGGTTTGTGACGAAGGAAGAGATTGTGAGATG 1258
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1240 TGGGGTTAGGGTTAAGGCAGATCAAAATGGGTTTGTTCCGAAGGAAGAGATTGTGAGATG 1299
Query 1259 TGTTGGAGAAGTTATGGAAGATATGTCGGAGAAAGGGAAGGAGATTAGAAAAAATGCTCG 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1300 TGTTGGAGAAGTTATGGAAGATATGTCGGAGAAAGGGAAGGAGATTAGAAAAAATGCTCG 1359
Query 1319 GAGATTGATGGAGTTTGCAAGAGAAGCTTTGTCTGAAGGAGGAAATTCTGATAAGAATAT 1378
||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1360 GAGGTTGATGGAGTTTGCAAGGGAAGCTTTGTCTGATGGAGGAAATTCTGATAAGAATAT 1419
Query 1379 AGATGAGTTTGTTGCTAAAATTGTGAGGTAAATTGA-TGGTATGATCAATTCTGTGATGC 1437
||||||||||||||||||||||||||||||| ||| || |||||| ||| || ||||||
Sbjct 1420 TGATGAGTTTGTTGCTAAAATTGTGAGGTAAAGTGACTG-TATGATTAAT-CTTTGATGC 1477
Query 1438 C-AATTAATAATGTGTTTTT 1456
||||||||||||||||||
Sbjct 1478 TTAATTAATAATGTGTTTTT 1497
> AT2G31751.1 | Symbols: | unknown gene | chr2:13499341-13502114
REVERSE LENGTH=1850
Length=1850
Score = 896 bits (485), Expect = 0.0
Identities = 547/577 (95%), Gaps = 4/577 (1%)
Strand=Plus/Minus
Query 882 GTCTTAAAGGACGATCAAATGATAGAAGTCGCGGCTGGTCTAAAACAAACTGGCCATAAC 941
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1848 GTCTTAAAAGACGATCAAATGATAGAAGTCGCGGCTGGTCTAAAACAAACTGGCCATAAC 1789
Query 942 TTCTTATGGGTTGTCAGAGAAACCGAAACAAAGAAGCTCCCAAGCAATTACATAGAGGAA 1001
|||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1788 TTCTTATGGGTTGTTAGAGAAACTGAAACAAAGAAGCTTCCAAGCAATTACATAGAGGAC 1729
Query 1002 ATTGGTGAAAAGGGATTGATAGTTAACTGGAGTCCTCAATTACAAGTTCTTGCACATAAA 1061
||| |||| |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1728 ATTTGTGACAAGGGATTGATAGTGAATTGGAGTCCTCAATTACAAGTTCTTGCACATAAA 1669
Query 1062 TCAGTCGGTTGTTTCATGACTCATTGCGGGTGGAATTCGACTTTAGAGGCATTGAGCTTA 1121
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1668 TCAATCGGTTGTTTCATGACTCATTGCGGGTGGAATTCGACTTTAGAGGCATTGAGCTTA 1609
Query 1122 GGAGTGGCTTTGATTGGAATGCCGGCTTATAGCGAACAACCGACTAATGCTAAGTTTATA 1181
||||| |||||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1608 GGAGTTGCTTTGATAGGAATGCCGGCTTATAGCGACCAGCCGACTAATGCTAAGTTTATT 1549
Query 1182 GAAGATGTGTGGAAGGTTGGGGTTAGGGTTAAGGCAGATCATAATGGGTTTGTGACGAAG 1241
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1548 GAAGATGTGTGGAAGGTTGGGGTTAGGGTTAAGGCAGATCAAAATGGGTTTGTTCCGAAG 1489
Query 1242 GAAGAGATTGTGAGATGTGTTGGAGAAGTTATGGAAGATATGTCGGAGAAAGGGAAGGAG 1301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 GAAGAGATTGTGAGATGTGTTGGAGAAGTTATGGAAGATATGTCGGAGAAAGGGAAGGAG 1429
Query 1302 ATTAGAAAAAATGCTCGGAGATTGATGGAGTTTGCAAGAGAAGCTTTGTCTGAAGGAGGA 1361
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 1428 ATTAGAAAAAATGCTCGGAGGTTGATGGAGTTTGCAAGGGAAGCTTTGTCTGATGGAGGA 1369
Query 1362 AATTCTGATAAGAATATAGATGAGTTTGTTGCTAAAATTGTGAGGTAAATTGA-TGGTAT 1420
||||||||||||||||| ||||||||||||||||||||||||||||||| ||| || |||
Sbjct 1368 AATTCTGATAAGAATATTGATGAGTTTGTTGCTAAAATTGTGAGGTAAAGTGACTG-TAT 1310
Query 1421 GATCAATTCTGTGATGCC-AATTAATAATGTGTTTTT 1456
||| ||| || |||||| ||||||||||||||||||
Sbjct 1309 GATTAAT-CTTTGATGCTTAATTAATAATGTGTTTTT 1274
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73995603330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5