BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482103
Length=1601
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31810.1 | Symbols: | ACT domain-containing small subunit o... 2505 0.0
> AT2G31810.1 | Symbols: | ACT domain-containing small subunit
of acetolactate synthase protein | chr2:13524221-13528557 FORWARD
LENGTH=1837
Length=1837
Score = 2505 bits (1356), Expect = 0.0
Identities = 1528/1610 (95%), Gaps = 15/1610 (1%)
Strand=Plus/Plus
Query 1 ACCTTGGGCTTCGTCTCTTCAATGGCGGCCATTTCTGTAAGTTCTTCACCATCTCTTCGC 60
||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 30 ACCTTCGGCTTCGTCTCGTCAATGGCGGCCATTTCTGTAAGTTCTTCACCATCTATTCGC 89
Query 61 TGCTTGAGATCGGCATGTTCCGATTCTTCTCCTGCTCTCGTATCCTCGACGCGTGTATCG 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 90 TGCTTGAGATCGGCATGTTCCGATTCTTCTCCTGCTCTTGTATCCTCGACGCGTGTATCG 149
Query 121 TTCCCGGCGAAGATTTCATATCTCTCCGGTCA-ATCTTCGCACCGTGGCGAAGAAATGGG 179
|||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||
Sbjct 150 TTCCCGGCGAAGATTTCATATCTCTCCGGT-ATATCTTCGCACCGTGGCGATGAAATGGG 208
Query 180 TAAGCGAATGGAGGGATTCGTTAGAAGTGTCGATGGGAAGATCTCTGACGCATCTTACTC 239
|||| ||||||| |||||||||||||| |||||||||||||||||||| || |||| |||
Sbjct 209 TAAGAGAATGGAAGGATTCGTTAGAAGCGTCGATGGGAAGATCTCTGATGCGTCTTTCTC 268
Query 240 CGAAGCTTCCTCTACGACTCCAAAATCCAAGGTGAGGAAGCACACAATTTCAGTATTTGT 299
||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 269 CGAAGCTTCATCTGCGACTCCAAAATCGAAGGTGAGGAAGCACACAATTTCAGTATTTGT 328
Query 300 TGGAGACGAAAGCGGAATGATTAATAGGATTGCTGGAGTGTTTGCAAGAAGAGGATACAA 359
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 329 TGGAGACGAAAGCGGAATGATTAATAGGATTGCAGGAGTGTTTGCAAGGAGAGGATACAA 388
Query 360 TATTGAGAGTCTTGCTGTTGGTCTGAACAGAGACAAAGCTTTATTCACCATAGTTGTCTG 419
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 389 TATTGAGAGTCTTGCTGTTGGTCTGAACAGAGACAAGGCTCTATTCACCATAGTTGTCTG 448
Query 420 TGGAACTGAAAGGGTACTTCAGCAGGTCATCGAGCAACTTCAGAAGCTCGTTAATGTTCT 479
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 449 TGGAACTGAAAGGGTACTTCAGCAGGTCATCGAGCAACTCCAGAAGCTCGTTAATGTTCT 508
Query 480 AAAGGTTGAAGATATCTCAAGTGAGCCGCAAGTGGAGCGTGAACTGATGCTTGTAAAAGT 539
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 509 AAAGGTTGAAGATATCTCAAGTGAGCCGCAAGTGGAGCGTGAGCTGATGCTTGTAAAAGT 568
Query 540 GAATGCGCATCCAGAATTCAGGGCAGAGATCATGTGGCTAGTTGACACATTCAGAGCAAG 599
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 GAATGCACATCCAGAATCCAGGGCAGAGATCATGTGGCTAGTTGACACATTCAGAGCAAG 628
Query 600 AGTTGTGGATATCGCGGAACATGCATTGACTATTGAGGTAACTGGAGATCCTGGAAAAAT 659
|||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 629 AGTTGTAGATATAGCGGAACATGCATTGACTATCGAGGTAACTGGAGATCCTGGAAAAAT 688
Query 660 GATTGCTGTAGAAAGAAATTTGAGAAAGTTTCAGATCAGAGAGATTGTAAGGACAGGAAA 719
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 689 GATTGCTGTAGAAAGAAATTTGAAAAAGTTTCAGATCAGAGAGATTGTAAGGACAGGAAA 748
Query 720 GATAGCACTGAGAAGGGAAAAGATGGGTGCAACTGCTCCATTTTGGCGATTTTCAGCAGC 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 GATAGCACTGAGAAGGGAAAAGATGGGTGCAACTGCTCCATTTTGGCGATTTTCAGCAGC 808
Query 780 ATCCTATCCAGATCTCAAGGAGCAAGCACCTGTTAGTGTTCTTCGAGGTAGCAAAAAAGG 839
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 809 ATCCTATCCAGATCTCAAGGAGCAAGCGCCTGTTAGTGTTCTTCGAAGTAGCAAAAAAGG 868
Query 840 AGCCGTGGTCCCTCAAAATGAAACAACAGCAGGGGGAGATGTTTATCCCGTTGAGCCAAC 899
|||| | ||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 869 AGCCATTGTCCCTCAAAAGGAAACATCAGCAGGGGGAGATGTTTATCCCGTTGAGCCATT 928
Query 900 TTTTGACCCCATGGTACATCGTGTTCTCGACGCTCACTGGGGACTTCTCACTGACGAAGA 959
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 929 TTTTGACCCCAAGGTACATCGTATTCTCGACGCTCACTGGGGACTTCTCACTGACGAAGA 988
Query 960 TACGAGTGGGCTACGGTCGCATACTCTATCGTTGCTTGTAAATGATACTCCAGGAGTTCT 1019
||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 989 TACGAGTGGACTACGGTCGCATACTCTATCATTGCTTGTAAATGATATTCCAGGAGTTCT 1048
Query 1020 TAATATTGTGACTGGTGTTTTCGCTCGAAGGGGATACAATATTCAGGCATACTTGGCTGT 1079
|||||||||||||||||||||||||||||||||||||||||| ||| | |||||| ||
Sbjct 1049 TAATATTGTGACTGGTGTTTTCGCTCGAAGGGGATACAATATCCAG--AG-CTTGGCCGT 1105
Query 1080 AGGACATGCTGAAACCAAGGGCATTTCACGCATTACAACAGTTGTACCTGCAACAGATGA 1139
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1106 AGGACATGCTGAAACCAAGGGCATTTCACGCATTACAACAGTTATACCTGCAACAGATGA 1165
Query 1140 ATCGGTCAGCAAATTGGTGCAGCAACTTTATAAACTCGTAGATGTGCATGAGGTTCGTGA 1199
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||
Sbjct 1166 ATCGGTCAGCAAATTGGTGCAGCAACTTTACAAACTCGTAGATGTGCATGAGGTCCATGA 1225
Query 1200 TCTTACGCATTTGCCATTTGCTGAAAGAGAACTGATGCTGATTAAGATTGCCGTGAACGC 1259
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1226 TCTTACTCATTTGCCATTTTCTGAAAGAGAACTGATGCTGATTAAGATTGCCGTGAACGC 1285
Query 1260 TGCTGCGAGAAGAGATGTCTTGGATATTGCTAGTATTTTCAGGGCTAAAGCTGTTGACGT 1319
|||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 1286 TGCTGCTAGAAGAGATGTCCTGGACATTGCTAGTATTTTCAGGGCTAAAGCTGTTGACGT 1345
Query 1320 ATCCGATCACACAATTACTTTGCAGCTTACTGGGGATCTAGACAAGATGGTTGCACTGCA 1379
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1346 ATCTGATCACACAATTACTTTGCAGCTTACTGGGGATCTAGACAAGATGGTTGCACTGCA 1405
Query 1380 AAGGTTGCTGGAGCCTTATGGTATATGCGAGGTTGCAAGAACTGGACGTGTGGCATTGGC 1439
|||||| ||||||| ||||||||||| |||||||||||||| || ||||||||||||||
Sbjct 1406 AAGGTTATTGGAGCCCTATGGTATATGTGAGGTTGCAAGAACCGGTCGTGTGGCATTGGC 1465
Query 1440 TCGTGAATCGGGAGTGGACTCCAAGTATCTTCGCGGATACTCCTTTCCTTTATCAGGTTA 1499
||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||| ||
Sbjct 1466 TCGTGAATCGGGAGTGGACTCCAAGTACCTTCGTGGATACTCCTTTCCTTTAACAGGCTA 1525
Query 1500 AACCGGTGCTGAGTGCATCCAT-G-------GAAACTTTTGAAGGTAAAAGTTTCATTAC 1551
||||| ||| |||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1526 AACCGTTGCAGAGTGCATCCATCGAACATCAGAAACTTTTGAAGGTAAAAGTTTCATTAC 1585
Query 1552 ACATTTTATGAGCCAACTCAAAGACAGAGCCAGAGAGACTGCGTAGATAT 1601
||| | ||||| |||||||||||||||| | |||||||||||||||||||
Sbjct 1586 ACAGTCTATGAACCAACTCAAAGACAGA-C-AGAGAGACTGCGTAGATAT 1633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79065858375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5