BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482111
Length=1825
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31870.1 | Symbols: TEJ | Poly (ADP-ribose) glycohydrolase (... 2514 0.0
> AT2G31870.1 | Symbols: TEJ | Poly (ADP-ribose) glycohydrolase
(PARG) | chr2:13549999-13553843 REVERSE LENGTH=1734
Length=1734
Score = 2514 bits (1361), Expect = 0.0
Identities = 1639/1765 (93%), Gaps = 52/1765 (3%)
Strand=Plus/Plus
Query 2 GCGGCAGCAGAATCTTGTCGCAGAAGCGATTCGCAGACCTGTTTCAAAGGCAAGTGAG-- 59
||||||||||||||||||||||||||||||||| | |||||||||||| |||| ||||
Sbjct 1 GCGGCAGCAGAATCTTGTCGCAGAAGCGATTCGTAAACCTGTTTCAAAAGCAATTGAGAA 60
Query 60 -A-----GAGATT------A---AAAAATGGAGAATCGCGAAGATCTTAACTCGATTCTT 104
| |||||| | |||||||||||||||||||||||||||||| ||||||
Sbjct 61 CAGCTGTGAGATTAGAAAAATCGAAAAATGGAGAATCGCGAAGATCTTAACTCAATTCTT 120
Query 105 CCATACCTTCCGCTTGTAATTCGTTCGTCGTCGCTGTATTGGCCACCGCGTGTGGTGGAG 164
|| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 CCGTACCTTCCACTTGTAATTCGTTCGTCGTCGCTGTATTGGCCGCCGCGTGTGGTGGAG 180
Query 165 GCGTTAAAGGCAATGTCTGAAGGACCATCTCACAGCCGAGTTGACTCAGGAGAAGTTCTA 224
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 181 GCGTTAAAGGCAATGTCTGAAGGACCATCTCACAGCCAAGTTGACTCAGGAGAGGTTCTA 240
Query 225 TGGCAAGCTATTTCCGATATGAGACGATCTTTATCCTTCTCAACTCTCGAGCCCTCTGCT 284
|||||||||||| ||||||||||||||| ||||| ||||| ||||||||||| ||||||
Sbjct 241 CGGCAAGCTATTTTCGATATGAGACGATCCTTATCTTTCTCTACTCTCGAGCCATCTGCT 300
Query 285 TCTCATGGCTACGC-TCTTCTCTTTGACGAATTGATTGATGAGAAAGAATCAAAGAGATG 343
||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCTAATGGCTACGCAT-TTCTCTTTGACGAATTGATTGATGAGAAAGAATCAAAGAGATG 359
Query 344 GTTCGATGAGATTATCCCAGCATTGGCCAGGTTACTCCTACAGTTTCCATCTC-GATTGG 402
||||||||||||||||||||||||||| || ||||| |||||||||||||||| | || |
Sbjct 360 GTTCGATGAGATTATCCCAGCATTGGCGAGCTTACTTCTACAGTTTCCATCTCTG-TTAG 418
Query 403 AAGTGCATTTCCAAAATGCTGATAATATCGTTAGAGGAATCAAAACAGGTCTCCGTTTGT 462
|||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||
Sbjct 419 AAGTGCATTTCCAAAATGCTGATAATATTGTTAGTGGAATCAAAACCGGTCTTCGTTTGT 478
Query 463 TAGATTCCCAACAAGCTGGCATTGTTTTCCTTAGCCAGGAGTTGATTGGAGCTCTTCTTG 522
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 479 TAAATTCCCAACAAGCTGGCATTGTTTTCCTCAGCCAGGAGTTGATTGGAGCTCTTCTTG 538
Query 523 CCTGCTCTTTCTTTTGTTTGTTTCCTGATGATAATAGAGGTGCAAAACACCTCCCAGTCA 582
| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 539 CATGCTCTTTCTTTTGTTTGTTTCCGGATGATAATAGAGGTGCAAAACACCTTCCAGTCA 598
Query 583 TCAACTTTGATCATTTGTTTGCGAGCCTTTATGA-AAGTTATAGTCAAAGTCAAGAAAGC 641
|||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||
Sbjct 599 TCAACTTTGATCATTTGTTTGCAAGCCTTTAT-ATAAGTTATAGTCAAAGTCAAGAAAGC 657
Query 642 AAGATAAGGTGTATTATGCATTACTTTGAAAGGTTTTGCTCCTGTGTGCCTATTGGTACT 701
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 658 AAGATAAGATGTATTATGCATTACTTTGAAAGGTTTTGCTCCTGCGTGCCTATTGGTATT 717
Query 702 GTTTCATTTGAACGCAAGATTCTTCCAGCTGAATACCACAATTTCTCTACCGCTGCTCCC 761
||||||||||||||||||||| || |||| | | | || | ||||
Sbjct 718 GTTTCATTTGAACGCAAGATTA--CC-GCTG----C-----T--C-CT---GATGCT--- 756
Query 762 GACGCTGATTTCTGGAGCAAGTCTGACGTTTCTCTTTGTGCATTTAAGGTTCACTCTTTT 821
|| | || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 GA---T--TT-CTGGAGCAAGTCTGACGTTTCTCTTTGTGCATTTAAGGTTCACTCTTTT 810
Query 822 GGGTTAATTGAAGATCAACCTGACAATGCTCTGGAAGTGGACTTTGCGAACAAGTATCTC 881
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 811 GGGTTAATTGAAGATCAACCTGACAATGCTCTCGAAGTGGACTTTGCAAACAAGTATCTC 870
Query 882 GGAGGTGGTTCCCTAAGTAGGGGGTGCGTACAGGAAGAGATACGTTTCATGATTAACCCT 941
|||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct 871 GGAGGTGGTTCCCTAAGTAGAGGGTGCGTGCAGGAAGAGATACGCTTCATGATTAACCCT 930
Query 942 GAATTAATCGCTGGCATGCTTTTCTTGCCTCGCATGGATGACAATGAAGCTATAGAAATA 1001
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 931 GAATTAATCGCTGGCATGCTTTTCTTGCCTCGGATGGATGACAATGAAGCTATAGAAATA 990
Query 1002 GTTGGTGCGGAAAGATTTTCATGCTACACAGGGTATGCATCTTCGTTTCGGTTTGCTGGT 1061
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 991 GTTGGTGCGGAAAGATTTTCATGTTACACAGGGTATGCATCTTCGTTTCGGTTTGCTGGT 1050
Query 1062 GAGTACATTGACAATAAGGCAATGGATCCTTTCAAAAGGCGAAGAACCAGAATTGTTGCA 1121
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 GAGTACATTGACAAAAAGGCAATGGATCCTTTCAAAAGGCGAAGAACCAGAATTGTTGCA 1110
Query 1122 ATTGATGCATTATGTGCCCCGAAGATGAGACATTTTAAAGATATATGCCTTTTACGGGAA 1181
||||||||||||||| | |||||||||||||| |||||||||||||| |||||| |||||
Sbjct 1111 ATTGATGCATTATGTACACCGAAGATGAGACACTTTAAAGATATATGTCTTTTAAGGGAA 1170
Query 1182 ATTAATAAGGCACTATGTGGCTTTTTAAATTGTAGCAAGTCTTGGCAGCACCAGAATATA 1241
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1171 ATTAATAAGGCACTATGTGGCTTTTTAAATTGTAGCAAGGCTTGGGAGCACCAGAATATA 1230
Query 1242 CTCATAGATGAAGGAGATAAAGAAATTCAGCTTG-CCAGAAACGACAGAGATTCTGGTCT 1300
|||| |||||||||||||| ||||||||||||| || |||||| |||||||||||||||
Sbjct 1231 TTCATGGATGAAGGAGATAATGAAATTCAGCTTGTCC-GAAACGGCAGAGATTCTGGTCT 1289
Query 1301 TCTGCGTACAGAAACTACTGCGTTACACGGAACTCCACTAAATGATGTCGAGATGAATAG 1360
||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||
Sbjct 1290 TCTGCGTACAGAAACTACTGCGTCACACCGAACTCCACTAAATGATGTTGAGATGAATAG 1349
Query 1361 AGAAAAGCCTGCTAACAATCTTATCAGAGATTTTTATGTGGAAGGAATTCATTGCGAGGA 1420
|||||||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 1350 AGAAAAGCCTGCTAACAATCTTATCAGAGATTTTTATGTGGAAGGAGTTGATAACGAGGA 1409
Query 1421 TAATGAAGATGATGGTGTCGCGACAGGGAATTGGGGATGCGGTGTTTTTGGAGGAGACCC 1480
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1410 TCATGAAGATGATGGTGTCGCGACAGGGAATTGGGGATGTGGTGTTTTTGGAGGAGACCC 1469
Query 1481 AGAGCTTAAGGCTACGATCCAATGGCTAGCTGCTTCCCAGACTCGAAGACCATTTATATC 1540
|||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1470 AGAGCTAAAGGCTACGATACAATGGCTTGCTGCTTCCCAGACTCGAAGACCATTTATATC 1529
Query 1541 ATATTACACCTTTGGAGTAGAGGCACTCCAAAACCTAGATCAGGTGACCAAGTGGATTCT 1600
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1530 ATATTACACCTTTGGAGTAGAGGCACTCCGAAACCTAGATCAGGTGACGAAGTGGATTCT 1589
Query 1601 TTCCCATAAATGGACTGTTGGAGATCTGTGGAACATGATGCTAGAATATTCTGCTCAAAG 1660
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1590 TTCCCATAAATGGACTGTTGGAGATCTGTGGAACATGATGTTAGAATATTCTGCTCAAAG 1649
Query 1661 GCTCTACAAGCAAACCAATCTTGGCTTCTTTTCGTGGCTACTTCCATCTCTAGCTACCAC 1720
||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1650 GCTCTACAAGCAAACCAGTGTTGGCTTCTTTTCTTGGCTACTTCCATCTCTAGCTACCAC 1709
Query 1721 CAACAAAGCTATCCAGCCTCCTTGA 1745
|||||||||||||||||| ||||||
Sbjct 1710 CAACAAAGCTATCCAGCCGCCTTGA 1734
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90310780455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5