BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482113
Length=2081
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31880.1 | Symbols: SOBIR1, EVR | Leucine-rich repeat protei... 3356 0.0
AT2G31890.1 | Symbols: ATRAP, RAP | RAP | chr2:13556500-1355976... 789 0.0
> AT2G31880.1 | Symbols: SOBIR1, EVR | Leucine-rich repeat protein
kinase family protein | chr2:13554894-13556977 FORWARD LENGTH=2084
Length=2084
Score = 3356 bits (1817), Expect = 0.0
Identities = 1996/2084 (96%), Gaps = 6/2084 (0%)
Strand=Plus/Plus
Query 1 ACAAGAAGAAAGTTTCTCTAATTAAAATGGCTGTTCCCACGGGAAACGCCCAtctcttct 60
||||||||||| ||||||||||||||||||||||||||||||||| || ||| || |||
Sbjct 1 ACAAGAAGAAACTTTCTCTAATTAAAATGGCTGTTCCCACGGGAAGCG-CCA-ATC-TCT 57
Query 61 ttctcccgcctctcatcctcgccgttctctcctttcttcttctctcttcattcgtctctt 120
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 58 TTCTCCGGCCTCTCATCCTCGCCGTTCTCTCCTTTCTTCTTCTCTCTTCATTCGTCTCCT 117
Query 121 ccGTTGAGTGGCTCGATCTCGATTCATCAGATCTCAAAGCTCTTCAGATCATCGAAACAG 180
| ||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 118 CTGTTGAGTGGCTCGATATCGATTCCTCAGATCTCAAAGCTCTTCAGGTCATCGAAACAG 177
Query 181 AGCTCGGAGTCAACAGTCAACGTTCTTCCTCCAGTGATGTCAACCCTTGCGGTCGCCGAG 240
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 178 AGCTCGGAGTCAACAGTCAACGTTCTTCGGCCAGTGATGTCAACCCTTGCGGTCGCCGAG 237
Query 241 GAGTTTTCTGCGAGAGACGGCGCTCTGCCACCACCGGAGAATACGTTCTCCGTGTCACGA 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 238 GAGTTTTCTGCGAGAGACGGCACTCTGCCACCACCGGAGAATACGTTCTCCGTGTCACGA 297
Query 301 GGCTCGTTTACCGATCCAGGAGCTTGACGGGAACTATCTCTCCGGTGATTGGAATGTTGT 360
||||||| ||||||||||||||||||||||| |||||||||||||| || ||||||||||
Sbjct 298 GGCTCGTCTACCGATCCAGGAGCTTGACGGGGACTATCTCTCCGGTCATCGGAATGTTGT 357
Query 361 CGGAGCTCAAGGAACTTACTTTGTCTAATAACCAGCTGGTCAACGCTGTTCCGGTGGATA 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 358 CGGAGCTCAAGGAACTTACTTTGTCTAATAACCAGTTGGTCAACGCTGTTCCGGTGGATA 417
Query 421 TCTTGAGCTGTAAGCAACTTGAAGTTCTTGATCTTCGGAAAAATAGATTTTCAGGTCAAA 480
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 418 TCTTAAGCTGTAAGCAACTTGAAGTTCTTGATCTTCGGAAAAATAGATTTTCCGGTCAGA 477
Query 481 TTCCAGGAAACTTTTCTAGTTTGAGCCGTCTGCGAATCCTTGATCTTTCTTCGAACAAAT 540
|||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 478 TTCCGGGAAACTTTTCTAGTTTGAGCCGTCTTCGAATCCTTGATCTCTCTTCGAACAAGT 537
Query 541 TCTCCGGGAACTTGAATTTCTTGAAGAATCTACGAAACCTGGAGAATCTCTCTGTTGCAA 600
| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 538 TATCCGGGAACTTGAATTTCTTGAAGAATCTACGCAATCTGGAGAATCTCTCTGTTGCAA 597
Query 601 ACAATCTCTTCTCAGGCAAAATCCCGGAACCAAGTGCATCGTTCCACAATCTCCGGTTCT 660
|||||||||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct 598 ACAATCTCTTCTCAGGCAAAATCCCGGAACAAATTGTGTCGTTCCACAATCTCCGGTTCT 657
Query 661 TTGATTTCTCCGGAAACCGGTATTTGGAAGGTCCGGTTCCGGTTATGAGCAATAACAAGC 720
|||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 658 TTGATTTCTCCGGAAACCGGTATTTGGAAGGTCCGGCTCCGGTTATGAGCAGTATCAAGC 717
Query 721 TTCAGACATCTCCACACCAAACAAGACACATTCTTGCTGAAACTCCATCTTCAAATTCCA 780
|||||||||||||||| |||||||||||||||||||||||||||||| |||||| | |||
Sbjct 718 TTCAGACATCTCCACATCAAACAAGACACATTCTTGCTGAAACTCCAACTTCAAGTCCCA 777
Query 781 CGAAGAAACCTAACAACAGCACTACATCAAAAGCTCCAAAGGGAGCTCCAAAACCagaga 840
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 778 CGAACAAACCCAACAACAGCACTACATCAAAAGCTCCAAAGGGAGCTCCAAAACCAGGGA 837
Query 841 agtt---gaagaagaagaagaagagcaagaagaagaaagTAGCGGCATGGATCTTAGGGT 897
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AGTTGAAGAAGAAGAAGAAGAAGAGCAAGAAGAAGAAAGTAGCGGCATGGATCTTAGGGT 897
Query 898 TTGTCGTTGGAGCCATAGGCGGAACAATCTCTGGGTTTGTCTTCTCGGTGATGTTCAAAT 957
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 898 TTGTCGTTGGAGCCATAGGAGGAACAATCTCTGGGTTTGTCTTCTCGGTGTTGTTCAAAT 957
Query 958 TGATTATTCAAGCAATAAGAGGATCAGGAAAACCATCAGGTCCTTCCATATTCAGCCCAT 1017
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 958 TGATTATTCAAGCAATAAGAGGATCAGAAAAACCACCAGGTCCTTCCATATTCAGCCCAT 1017
Query 1018 TGATCAAGAAAGCTGAAGATTTAGCTTTCTTGGAGAATGAAGAAGCGTTAGCTTCTCTGG 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TGATCAAGAAAGCTGAAGATTTAGCTTTCTTGGAGAATGAAGAAGCGTTAGCTTCTCTGG 1077
Query 1078 AGATCATAGGAAGAGGAGGTTGTGGAGAAGTCTTCAAAGCTGAACTACCAGGAAGCAACG 1137
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1078 AGATCATAGGAAGAGGAGGTTGTGGAGAAGTTTTCAAAGCTGAACTACCAGGAAGCAATG 1137
Query 1138 GCAAGATCATCGCAGTAAAGAAAGTGATCCAACCGCCTAAAGACGCCGACGAACTAACAG 1197
| |||||||| || || |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1138 GGAAGATCATAGCTGTGAAGAAAGTGATCCAACCGCCTAAAGACGCCGATGAACTAACAG 1197
Query 1198 ATGAAGATTCCAAGTTTATGAACAAGAAAATGAGACAAATCAGATCCGAGATCAGCACAG 1257
||||||||||||||||| |||||||||||||||| ||||| ||||||||||||| |||||
Sbjct 1198 ATGAAGATTCCAAGTTTCTGAACAAGAAAATGAGGCAAATTAGATCCGAGATCAACACAG 1257
Query 1258 TCGGCCAAATCCGGCACCGGAATCTTCTCCCATTGTTAGCACATGTGTCAAGACCCGAGT 1317
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1258 TCGGCCATATCCGGCACCGGAATCTTCTCCCATTGTTAGCACACGTGTCAAGACCCGAGT 1317
Query 1318 GCCACTACCTCGTTTACGAGTACATGGAGAAGGGGAGTTTGCAAGATATATTGACTGATG 1377
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1318 GCCACTACCTCGTTTACGAGTACATGGAAAAGGGGAGTTTGCAAGATATATTGACTGACG 1377
Query 1378 TACAAGCTGGAAACCAAGAGCTAATGTGGCCAGCGAGGCACAAGATTGCTTTAGGTATAG 1437
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 TACAAGCTGGAAATCAAGAACTAATGTGGCCAGCGAGGCACAAGATTGCTTTAGGTATAG 1437
Query 1438 CCGCAGGGCTTGAGTACCTTCACATGGATCATAACCCACGAATCATTCACAGAGACTTAA 1497
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 CTGCAGGGCTTGAGTACCTTCACATGGATCATAACCCACGAATCATTCACAGAGACTTAA 1497
Query 1498 AGCCAGCCAATGTTCTTCTTGATGATGACATGGAAGCCAGAATTTCAGATTTCGGACTGG 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 AGCCAGCCAATGTTCTTCTTGATGATGACATGGAAGCCAGAATTTCAGATTTCGGACTGG 1557
Query 1558 CAAAGGTAATGCCAGATGCGGTCACACATATTACAACCTCGAATGTTGCAGGTACTGTGG 1617
|||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1558 CAAAGGCAATGCCAGATGCAGTCACACATATTACAACCTCGCATGTTGCAGGTACTGTGG 1617
Query 1618 GATACATAGCACCAGAGTTTTATCAAACTCACAAGTTCACAGATAAATGTGATATCTATA 1677
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1618 GATACATAGCACCAGAGTTTTATCAAACCCACAAGTTCACAGATAAATGTGATATCTATA 1677
Query 1678 GTTTTGGAGTGATTCTTGGGATTCTGGTAATTGGGAAGCTTCCTTCAGATGAGTTTTTTC 1737
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1678 GTTTTGGAGTGATTCTTGGGATTCTGGTGATTGGGAAGCTTCCTTCAGATGAGTTTTTTC 1737
Query 1738 AGCATACCGACGAGATGAGTCTGATAAAGTGGATGAGGAACATAATAACATCGGAAAATC 1797
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1738 AGCATACTGACGAGATGAGTCTGATAAAGTGGATGAGGAACATAATAACATCGGAAAATC 1797
Query 1798 CTAGCCTTGCGATTGATCCGAAGTTGATGGACCAAGGATTCGATGAACAGATGCTTCTGG 1857
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1798 CTAGCCTTGCGATTGATCCGAAGTTGATGGATCAAGGATTCGATGAACAGATGCTTCTGG 1857
Query 1858 TTCTGAAGATCGCCTGTTACTGTACTTTGGATGATCCAAAACAGAGGCCGAACAGCAAAG 1917
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1858 TTCTGAAGATCGCCTGTTACTGTACTTTGGATGATCCAAAACAGAGGCCGAACAGTAAAG 1917
Query 1918 ATGTCAGGACTATGTTGTCCCAGATCAAGCACTAGTGTTTCAACATGTATTGTTTGCTTC 1977
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1918 ATGTCAGGACCATGTTGTCCCAGATCAAGCACTAGTGTTTCAATATGTATTGTTTGCTTC 1977
Query 1978 TATGAATGTTTTCTAGATTCCTGTTGCATAAGAAATAACTGTGAACACAATCTTGGCAGA 2037
||| || ||| |||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1978 TATCTATATTTCCTAGATTCCTGTTGCATACGAAATAACTATGAACACAATCTTGGCAGA 2037
Query 2038 AATTTGTAATGAAGACTGTATAATTTAAATGGATTTCAATTATG 2081
||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 2038 AATTTGTAATGGCGACTGTAAAATTTAAATGGATTTCAATTATG 2081
> AT2G31890.1 | Symbols: ATRAP, RAP | RAP | chr2:13556500-13559767
REVERSE LENGTH=2668
Length=2668
Score = 789 bits (427), Expect = 0.0
Identities = 459/475 (97%), Gaps = 0/475 (0%)
Strand=Plus/Minus
Query 1607 AGGTACTGTGGGATACATAGCACCAGAGTTTTATCAAACTCACAAGTTCACAGATAAATG 1666
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2668 AGGTACTGTGGGATACATAGCACCAGAGTTTTATCAAACCCACAAGTTCACAGATAAATG 2609
Query 1667 TGATATCTATAGTTTTGGAGTGATTCTTGGGATTCTGGTAATTGGGAAGCTTCCTTCAGA 1726
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2608 TGATATCTATAGTTTTGGAGTGATTCTTGGGATTCTGGTGATTGGGAAGCTTCCTTCAGA 2549
Query 1727 TGAGTTTTTTCAGCATACCGACGAGATGAGTCTGATAAAGTGGATGAGGAACATAATAAC 1786
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2548 TGAGTTTTTTCAGCATACTGACGAGATGAGTCTGATAAAGTGGATGAGGAACATAATAAC 2489
Query 1787 ATCGGAAAATCCTAGCCTTGCGATTGATCCGAAGTTGATGGACCAAGGATTCGATGAACA 1846
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2488 ATCGGAAAATCCTAGCCTTGCGATTGATCCGAAGTTGATGGATCAAGGATTCGATGAACA 2429
Query 1847 GATGCTTCTGGTTCTGAAGATCGCCTGTTACTGTACTTTGGATGATCCAAAACAGAGGCC 1906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2428 GATGCTTCTGGTTCTGAAGATCGCCTGTTACTGTACTTTGGATGATCCAAAACAGAGGCC 2369
Query 1907 GAACAGCAAAGATGTCAGGACTATGTTGTCCCAGATCAAGCACTAGTGTTTCAACATGTA 1966
|||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 2368 GAACAGTAAAGATGTCAGGACCATGTTGTCCCAGATCAAGCACTAGTGTTTCAATATGTA 2309
Query 1967 TTGTTTGCTTCTATGAATGTTTTCTAGATTCCTGTTGCATAAGAAATAACTGTGAACACA 2026
|||||||||||||| || ||| |||||||||||||||||| ||||||||| ||||||||
Sbjct 2308 TTGTTTGCTTCTATCTATATTTCCTAGATTCCTGTTGCATACGAAATAACTATGAACACA 2249
Query 2027 ATCTTGGCAGAAATTTGTAATGAAGACTGTATAATTTAAATGGATTTCAATTATG 2081
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 2248 ATCTTGGCAGAAATTTGTAATGGCGACTGTAAAATTTAAATGGATTTCAATTATG 2194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103162119975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5