BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482122
Length=1391
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31955.1 | Symbols: CNX2 | cofactor of nitrate reductase and... 2026 0.0
> AT2G31955.1 | Symbols: CNX2 | cofactor of nitrate reductase and
xanthine dehydrogenase 2 | chr2:13584139-13586589 REVERSE
LENGTH=1605
Length=1605
Score = 2026 bits (1097), Expect = 0.0
Identities = 1285/1373 (94%), Gaps = 24/1373 (2%)
Strand=Plus/Plus
Query 38 AGTGTTGTTAACGATGAGGAGGTGCTTCTCCAAAATTACTGATTGCTACTTGGGTTTCAA 97
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 93 AGTGTTGTTAACGATGAGGAGGTGCTTCTCCAAAATTACTGATTGCCACTTGGGTTTCAA 152
Query 98 GAATTCCAACTTCTTCTTGGTTGGTTCTGAAGTTGGGTCAGGTTCAGTTACAAGAACCA- 156
||||||||||||||| |||||||||||||||||||| ||||||||||| || |||||||
Sbjct 153 GAATTCCAACTTCTTATTGGTTGGTTCTGAAGTTGGTTCAGGTTCAGTAACGAGAACCAT 212
Query 157 T--TACTACTACTAGTGAGCGTTCATTTAGCACTAGTTATGCAGCTCATCAAGTTGATCA 214
| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 213 TACTACTACTACTAGTGAGCGTTTATTTAGCAGTAGTTATGCAGCTCATCAAGTTGATCA 272
Query 215 GACCAAAGACAGTCCTGTCTCTGACATGTTGATTGATTCTTTTGGTCGGTTACATACCTA 274
|| ||||||| ||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 273 GATAAAAGACAATCCTGTCTCTGACATGTTGATTGATAAATTTGGTCGCTTACATACCTA 332
Query 275 CTTGAGAATATCTTTGACAGAGCGGTGTAACCTCCGGTGTCAGTATTGTATGCCTTCTGA 334
|||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 333 CTTGAGGATATCTTTGACTGAGCGGTGTAATCTCCGGTGTCAGTATTGTATGCCGTCTGA 392
Query 335 AGGTGTGGAGCTTACTCCTAAGCCCCAGTTGTTGTCACAGTCTGAGATTGTTAGGTTGGC 394
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 393 AGGTGTGGAACTTACTCCTAAGCCTCAGTTGTTGTCACAGTCTGAGATTGTTAGGTTGGC 452
Query 395 TGGTCTTTTTGTTTCTGCTGGGGTTAACAAGATTCGGTTGACCGGTGGTGAGCCTACCAT 454
||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| |
Sbjct 453 TGGTCTTTTTGTTTCTGCTGGTGTTAACAAGATTCGGTTGACTGGTGGCGAGCCTACGGT 512
Query 455 TAGGAATGATATCGAAGAGATTTGTCTCCAGTTGTCTAGTTTAAAAGGGTTGAAGAATCT 514
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 513 TAGGAAAGATATCGAAGAGATTTGTCTGCAGTTGTCTAGTTTAAAAGGGTTGAAGAATTT 572
Query 515 GGCTATTACTACCAACGGTATCACTCTTGCGAAAAAGCTACCTAA-GCTTCAA-GAATGC 572
|||||||||||||||||||||||||||||||||||| ||||| || |||| || ||||||
Sbjct 573 GGCTATTACTACCAACGGTATCACTCTTGCGAAAAAACTACC-AAGGCTT-AAGGAATGC 630
Query 573 GGGCTTGATTCGCTAAATATTAGCTTGGATACTTTGGTCCCAGCAAAGTTTGAGTTTCTG 632
|| ||||||||||| ||||| |||||||||||| |||| |||||||||||||||||||||
Sbjct 631 GGACTTGATTCGCTGAATATCAGCTTGGATACTCTGGTTCCAGCAAAGTTTGAGTTTCTG 690
Query 633 ACTAGGCGTAAAGGGCACGATAGGGTTATGAAATCGATTGATACTGCTATTGAGCTTGGA 692
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 ACTAGACGTAAAGGGCATGATAGGGTTATGAAATCGATTGATACTGCTATTGAGCTTGGA 750
Query 693 TACAATCCTGTGAAAGTCAATTGTGTTGTCATGAGGGGATTGAATGATGATGAGATTTGT 752
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 751 TACAATCCTGTGAAAGTCAATTGTGTTATCATGAGGGGATTGAATGATGATGAGATTTGT 810
Query 753 GATTTTGTGGAGTTGACACGCGAGAAGCCAATCAATGTTCGGTTCATCGAGTTTATGCCA 812
|||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 811 GATTTTGTTGAGTTGACACGCGACAAGCCAATCAATGTCCGGTTCATCGAGTTTATGCCA 870
Query 813 TTTGATGGAAATGTTTGGAACGTGAAGAAACTTGTGCCTTATGCAGAAGTGATGGATAAA 872
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 871 TTTGATGGAAATGTTTGGAATGTGAAGAAACTTGTACCTTATGCAGAAGTGATGGATAAA 930
Query 873 GTGGTCAAGCGCTTTCCGAGTATAAAACGTATGCAAGATCACCCTACTGAAACAGCTAAG 932
||||||||| | |||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct 931 GTGGTCAAGAGGTTTCCGAGCATAAAACGAATGCAAGATCACCCAACTGAAACAGCTAAG 990
Query 933 AACTTTACGATCGATGGGCATTGCGGTTCTGTTTCTTTCATCACATCCATGACAGAACAC 992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 AACTTTACGATCGATGGGCATTGCGGTTCTGTTTCTTTCATCACATCCATGACAGAACAC 1050
Query 993 TTCTGTTCTGGCTGCAATAGATTGAGACTTCTTGCAGATGGGAACTTCAAAGTTTGCTTG 1052
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 TTCTGTGCTGGCTGCAATAGATTGAGACTTCTTGCAGATGGGAACTTCAAAGTTTGCTTG 1110
Query 1053 TTTGGTCCTTCTGAGGTTAGTCTCAGAGATCCTCTCCGGTCTGGTGCTGATGACGAGGCA 1112
||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1111 TTTGGTCCTTCAGAGGTTAGTCTGAGAGATCCTCTCCGGTCTGGTGCTGATGATGAGGCG 1170
Query 1113 CTCAGGGAAATTATAGGCGCTGCTGTGAAGAGGAAGAAAGCCGCACACGCTGGAATGCTT 1172
|| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1171 CTAAGGGAAATTATAGGCGCTGCTGTGAAGAGAAAGAAAGCTGCACACGCTGGAATGCTT 1230
Query 1173 GACATTGCCAAAACAGCTAATAGACCAATGATACACATTGGTGGCTAAGCTCCGCTGAAC 1232
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1231 GACATTGCTAAAACAGCTAATAGACCAATGATACACATTGGTGGCTAAGCTCCGGTGAAC 1290
Query 1233 GTTGGTGAAGTTCCTG-AAAATTCACTACAAGGAACGTTTGAGTTTTATAGCTAGTAAGA 1291
|||||||||||||||| |||| ||||||||||||| ||||||||||||| || ||||||
Sbjct 1291 GTTGGTGAAGTTCCTGGAAAA--CACTACAAGGAACATTTGAGTTTTATATCTTGTAAGA 1348
Query 1292 ATCTATCCGCTGCTCCCAACTC-------C-GTGACAAACTTTTTTGCAAACAAGAA--- 1340
||||||| |||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1349 ATCTATCTGCTGCTCCCAACTCTGTGAGACTGTGACAAACTTTTTTGCAAACAAGAACAA 1408
Query 1341 GA---CTGAAGTGTGTCTCAAAATGTTTCTTCTCTGTATACGTAACAGACACT 1390
|| |||||| || ||||||| ||||||||||||||||||||||||||||||
Sbjct 1409 GAAGACTGAAGAGTTTCTCAAACTGTTTCTTCTCTGTATACGTAACAGACACT 1461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68523743925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5