BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg482123

Length=180
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G31957.1 | Symbols: LCR75, LCR79 | low-molecular-weight cyst...   268    9e-72


> AT2G31957.1 | Symbols: LCR75, LCR79 | low-molecular-weight cysteine-rich 
75 | chr2:13587709-13588252 FORWARD LENGTH=314
Length=314

 Score =  268 bits (145),  Expect = 9e-72
 Identities = 168/179 (94%), Gaps = 2/179 (1%)
 Strand=Plus/Plus

Query  3    AGAGATGGTTGAAGGACAACAAATGTGTGAAGCAAAGAGCATGAACTGGAAGGGTATGTG  62
            |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct  72   AGAGATGGTTGAAGGACAACAAATGTGTGAAGCAAAGAGCTTGGACTGGAAGGGTATGTG  131

Query  63   TATGAAGTGGAGGAAATGTCGCCAAGTATGCATTAGCCAAGGTTTCACTGACGGTCGTTG  122
            | |||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  132  TCTGAAATGGAGGAATTGTCGCCAAGTATGCATTAGCGAAGGTTTCACTGACGGTCGTTG  191

Query  123  CAAAGGATTCACCCGCAACTGCATTTGTATCAAACTTTGTTTTGTCCCTTC-TAATTAA  180
            |||||||||||||||||| |||||||||| ||||| ||||||||||| ||| |||||||
Sbjct  192  CAAAGGATTCACCCGCAAATGCATTTGTAGCAAACCTTGTTTTGTCC-TTCCTAATTAA  249



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7897312107


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5