BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482126
Length=598
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31980.1 | Symbols: AtCYS2, CYS2 | PHYTOCYSTATIN 2 | chr2:13... 843 0.0
> AT2G31980.1 | Symbols: AtCYS2, CYS2 | PHYTOCYSTATIN 2 | chr2:13609093-13609902
REVERSE LENGTH=729
Length=729
Score = 843 bits (456), Expect = 0.0
Identities = 538/577 (93%), Gaps = 7/577 (1%)
Strand=Plus/Plus
Query 1 TGAAACCTAAGAAGAAAACAAAAAGTGAGAAGCAATGGCTGCAATGTTGAAGGTCTCTCT 60
|||| ||||||||||| |||||||||||||||||||||| | |||||||||||||||||
Sbjct 99 TGAAGCCTAAGAAGAAGGCAAAAAGTGAGAAGCAATGGCTACCATGTTGAAGGTCTCTCT 158
Query 61 TATATTGTCATTGTTAGGGTTTCTGGTGATCGCTGTCGTGACTCCATCGGCGGCGAACCC 120
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 159 TGTATTGTCATTGTTAGGTTTTCTGGTGATCGCTGTCGTGACTCCATCGGCGGCGAACCC 218
Query 121 ATTCAGGAAGAGCGTAGTTCTCGGAGGGAAGTCAGGTGTTCCAAACATTCGGACCAACAG 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 219 ATTCAGGAAGAGCGTAGTTCTCGGAGGGAAGTCAGGCGTTCCAAACATTCGGACCAACAG 278
Query 181 GGAGATTCAAGAACTTGGAAGGTACTGCGTGGAGCAATTCAATCAACAAGAACAGACCGA 240
||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 279 GGAAATTCAACAACTTGGAAGGTACTGCGTGGAGCAATTCAATCAACAAGCACAGAACGA 338
Query 241 GCAAGGAAACATAGGATCCATTGCGAAAACGGACACAGCCATGTCGAATCCATTGGTGTT 300
|||||||||||||||||||||||||||||| ||||| || || |||||||||||| ||
Sbjct 339 GCAAGGAAACATAGGATCCATTGCGAAAACAGACACGGCAATTTCGAATCCATTGCAATT 398
Query 301 TAGCCGAGTTGTATCGGCTCAAAAACAGGTCGTCGCTGGGAC-CAAATACTATCTAAGGA 359
||||||||| || || ||||| ||||||||||||||||| || |||||||||||||||||
Sbjct 399 TAGCCGAGTAGTGTCTGCTCAGAAACAGGTCGTCGCTGG-ACTCAAATACTATCTAAGGA 457
Query 360 TTGAAGTGACTCAACCCAATGGCTCGACCAGGATGTTTGACTCTGTTGTGGTTATTCAAC 419
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 458 TTGAAGTCACTCAACCCAATGGCTCTACCAGGATGTTTGACTCTGTTGTGGTTATTCAAC 517
Query 420 CATGGCTCCATTCTAAGCAGTTGCTAGGTTTCACTCCTGTTGTCAGTCCTATCTACTAAC 479
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 518 CATGGCTCCATTCTAAGCAGTTGCTCGGTTTCACTCCTGTTGTCAGTCCTGTCTACTAAC 577
Query 480 TTCATTTCTT---ATTCAGCCTTAAATTTCCATAATATGATCATGAAAAGACTAAAAGGT 536
|| ||||||| |||| | ||||||||||||||||||||||| ||||||||||||||||
Sbjct 578 TTTATTTCTTCTTATTC-GACTTAAATTTCCATAATATGATCAAGAAAAGACTAAAAGGT 636
Query 537 GTATGATACGAAGCTATTAAGAATGGGTTTAT-GTTG 572
||||||||| ||||||||||||||||||| || ||||
Sbjct 637 GTATGATACAAAGCTATTAAGAATGGGTTAATAGTTG 673
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28784166231
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5