BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482128
Length=964
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31985.1 | Symbols: | Protein of unknown function (DUF1264)... 1397 0.0
> AT2G31985.1 | Symbols: | Protein of unknown function (DUF1264)
| chr2:13613928-13615692 REVERSE LENGTH=957
Length=957
Score = 1397 bits (756), Expect = 0.0
Identities = 904/972 (93%), Gaps = 23/972 (2%)
Strand=Plus/Plus
Query 1 CTCTTTGCAGTTACTCTGTTTGTTTGGTTGTTTAAAAGTTTTTGAAGAGAAAGAGCAAAT 60
||||||||| ||||||||||| |||| |||||||||||||||||||||| ||||||||||
Sbjct 1 CTCTTTGCAATTACTCTGTTT-TTTGCTTGTTTAAAAGTTTTTGAAGAGGAAGAGCAAAT 59
Query 61 AATTGATTGA-GAAAATGGAGAAGGCAGTTCACTCTTCCACAACGTCTGGACCGGCGGTT 119
||||||| | |||||||||||| ||||||||||| || || ||||||||||||||||||
Sbjct 60 CATTGATT-AGGAAAATGGAGAAAGCAGTTCACTCGTCGACCACGTCTGGACCGGCGGTT 118
Query 120 CCAGGGGAGGCAACAAAGACCGGAACCTCCATAATTGACGCTGCGGCCTCCGCCGTTCAA 179
||||||||| ||||||||||||||||||||||||||||| |||| |||||||| ||||||
Sbjct 119 CCAGGGGAGACAACAAAGACCGGAACCTCCATAATTGACACTGCAGCCTCCGCTGTTCAA 178
Query 180 AGTTTTGCACCTGTTAACCAAATCCACCAACACCTCTGCGCGTTCCATTTCTATGCGGAC 239
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 179 AGTTTTGCACCGGTTAACCAAATCCACCAACATCTCTGCGCGTTCCATTTCTATGCTGAC 238
Query 240 GACATGGCACGACAAGTAGAGGCTCACCATTTCTGCAGTCACGTGAATGAAGAGATGCGT 299
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 239 GACATGGCACGACAAGTAGAGGCTCACCATTTCTGCAGTCACGTGAACGAAGAGATGCGT 298
Query 300 CAGTGTTTGATATACGACGGTCCAGATGCAAACGCTCGTCTGATCGGATTGGAGTACATA 359
||||||||||| ||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 299 CAGTGTTTGATCTACGACGGTCCGGATGCAAACGCTCGTCTAATTGGATTGGAGTACATA 358
Query 360 GTGTCAGAGAAGCTGTTCATGACTTTGCCTGACGAAGAGAAGAAGCTTTGGCACTCGCAC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GTGTCAGAGAAGCTGTTCATGACTTTGCCTGACGAAGAGAAGAAGCTTTGGCACTCGCAC 418
Query 420 GAGTGGGAAGTGAAAGGAGGTTTCTTGTTCATGCCTGGTGTTCCAGGTGCCATTCAGCGT 479
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 419 GAGTGGGAAGTGAAAGGAGGGTTCTTGTTCATGCCTGGTGTTCCAGGTGCCATTCAGCGT 478
Query 480 CAAGATCTTGATAAAGTCGCTAAGACTTATGGCAAAGTTTTCCATTTTTGGCAAGTTGAT 539
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 479 AAAGATCTTGATAAAGTCGCTAAGACTTATGGGAAAGTTTTCCATTTTTGGCAAGTTGAT 538
Query 540 TTGGGCCATGAGCTTCCCATTGGTTTACCTAATGTCATGATGGCTGTTACCCGCGATGGC 599
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 539 TTGGGCCATGAGCTTCCCATTGGTTTACCTAATGTCATGATGGCTGTTACACGCGATGGC 598
Query 600 CAGCTTTTCCATGAGATGATTCAGGAGGCAGAGAAGCGGTTTGGGGTATCGGTTGAGGGG 659
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 599 CAGCTTTTCCACGAGATGATTCAGGAGGCAGAGAAGCGGTTTGGGGTATCGGTAGAGGGG 658
Query 660 GAGAGGGACTCAAGGGCGTATATGACAGGGCCCGAGCTGGGGATCCATCCATTGGCGAAT 719
|||||||||||| ||||||||||| | || || ||||| |||||||||||||||||||||
Sbjct 659 GAGAGGGACTCACGGGCGTATATGTCTGGACCTGAGCTCGGGATCCATCCATTGGCGAAT 718
Query 720 GGAGGAGGCAAAGGGATGAAACTAGAGCTGCGAGAGGTCGATATCAAGCCGGTTGAGTCT 779
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 719 GGAGGAGGCAAAGGGATGAAACTAGAGCTACGAGAGGTCGATATCAAGCCGGTTGAGTCT 778
Query 780 GTCGGCAGCGTCTTTGTCTGAGTTTA-TTACCTAAGACCTTATTAAGTATAATAATGGCC 838
|||||||||||||||||||||||||| ||| || |||| | || || | | | ||
Sbjct 779 GTCGGCAGCGTCTTTGTCTGAGTTTACTTA---AA-ACCTC-T-AA-TA-A-T---GCCC 826
Query 839 ACAAAGCAAGCAATGTGTGTTTTGGTAAACACAAAGCGTACAGTACTAGACAACAAGAC- 897
||||||||||||||| |||||||||||||||||| ||||| | ||||||||||||||
Sbjct 827 TCAAAGCAAGCAATGTATGTTTTGGTAAACACAAAACGTACGGAACTAGACAACAAGATT 886
Query 898 ACTTAAAATAGTTTGGTTTTATTTCTTTG-G-ATTTTATTTAT--T-AGTAATAAAATAA 952
|||||||||||||||| || ||||||||| | || |||||||| | |||||||| ||||
Sbjct 887 ACTTAAAATAGTTTGGATT-ATTTCTTTGTGGATCTTATTTATAATTAGTAATAAGATAA 945
Query 953 GAAATAACATCT 964
||||||| ||||
Sbjct 946 GAAATAATATCT 957
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47169864033
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5