BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482130
Length=2698
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32000.1 | Symbols: | DNA topoisomerase, type IA, core | ch... 4390 0.0
> AT2G32000.1 | Symbols: | DNA topoisomerase, type IA, core |
chr2:13615900-13621641 REVERSE LENGTH=2775
Length=2775
Score = 4390 bits (2377), Expect = 0.0
Identities = 2597/2704 (96%), Gaps = 12/2704 (0%)
Strand=Plus/Plus
Query 1 AAAAGCTCATTCGACGCCGCCTGAGC-TTGACCCGATTCTGA--CG--TC-GTCGTCTTC 54
|||||||||||||||||||||||||| |||| | || ||| || || | |||||||
Sbjct 19 AAAAGCTCATTCGACGCCGCCTGAGCTTTGA---G-TTTTGACCCGATTCTGACGTCTTC 74
Query 55 TTCAATGGCTAATCGCCCCAGAGTTCTCATGGTGGCGGAGAAGCCCAGCATTGCTCTCTC 114
|||||||||||||| || ||||||||| |||||||||||||||||||||||||| |||||
Sbjct 75 TTCAATGGCTAATCTCCTCAGAGTTCTTATGGTGGCGGAGAAGCCCAGCATTGCCCTCTC 134
Query 115 CATAGCTTCAGTTCTCTCACATGGCCAGATGTCTACAAGGAGAGGCAGTACAGAGGTGCA 174
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 TATAGCTTCAGTTCTCTCACATGGCCAGATGTCTACAAGGAGAGGCAGTACAGAGGTGCA 194
Query 175 TGAATTTGATGGGATGTTTCGAGGTTTCAAAGCACATTATAGAGTTACATCTGTTATCGG 234
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 195 TGAATTTGATGGCATGTTTCGAGGCTTCAAAGCACATTATAGAGTTACATCTGTTATCGG 254
Query 235 ACATGTTTTCAGTGTAGATTTCCCTGAAAAATATCAAAATTGGGCAACAATTGACCCTCA 294
||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| || ||
Sbjct 255 TCATGTTTTCAGTGTAGATTTCCCAGAAAAATATCAGAATTGGGCAACTATTGATCCACA 314
Query 295 AGATCTTTTCGACGCTCCAATTCTTAAAAAAGAGTCAAACCCAAAGGCTCATATTTGTAG 354
|||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||
Sbjct 315 AGATCTTTTCGACGCTCCAATTATTAAAAAGGAATCAAACCCAAAGGCTCATATTTGTAG 374
Query 355 GCATTTAAGTAATGAAGCTCGTGGTTGCAGTTATATGGTGTTGTGGTTGGATTGCGATCG 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 GCATTTAAGTAATGAAGCTCGTGGTTGCAGTTATATGGTGTTGTGGTTGGATTGCGATCG 434
Query 415 TGAAGGGGAAAATATATGTTTTGAAGTTATTGAGTCTACTGGCTTTGACATAAAAGATAG 474
|||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 435 TGAAGGAGAAAATATATGTTTTGAAGTTATCGAGTCTACTGGCTTTGACATGAAAGATAG 494
Query 475 TAAGAGAAAGGTTTATCGGGCGCGGTTTTCTTCTGTGACTGAGAAAGATATATCAAAGGC 534
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 495 TAAGAGAAAGGTTTATCGGGCACGGTTTTCTTCTGTGACTGAGAAAGATATATCAAAGGC 554
Query 535 CATGGACAACCTTGTTGAACCAAACAGAGATGAGGCACTGGCAGTAGATGCTCGTCAAGA 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 CATGGACAACCTTGTTGAACCAAACAGAGATGAGGCACTGGCAGTAGATGCTCGTCAAGA 614
Query 595 GATTGATCTAAAAGTTGGTGTAGCATTCTCTCGATTTCAAACAAGTTATTTCCAAGGCAA 654
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 615 GATAGATCTAAAAGTTGGTGTAGCATTCTCGCGATTTCAAACAAGTTATTTCCAAGGCAA 674
Query 655 ATATCAGAATCTAGACTGCAGAGTTATCTCATATGGGCCATGCCAGACGCCTACTCTTGG 714
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 675 ATATCAGAATCTAGACTGCAGAGTTATCTCGTATGGGCCATGCCAGACACCTACTCTTGG 734
Query 715 GTTTTGTGTGCAACGGTACATGCATATTAATACTTTCAAGCCAGAAAAATTTTGGGCTCT 774
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 735 GTTTTGTGTGCAACGCTACATGCATATTAATACTTTCAAGCCAGAAAAGTTTTGGGCTCT 794
Query 775 GCGACCTTATATAATAAAGGATGGTTATGAGCTCCAATTAGAGTGGGAGAGACGTAGATT 834
|||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 795 GCGACCTTATATAAGAAAGGATGGTTATGAGCTCCAACTAGAGTGGGAGAGACGAAGATT 854
Query 835 GTTTGACCTGGAAGCTGCCACTGTGTTCCAAAAGTTGGTCGTGGAAGGTAGAACTGCAAA 894
||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 855 GTTCGACCTGGAAGCTGCTACTGTGTTCCAAAAGTTGGTCGTGGAAGGAAGAACTGCAAA 914
Query 895 AGTAATGGACGTATCAGAAAAGCAGGAAGTCAAAGGTCGTCCAGCCGGTCTTAACACCGT 954
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 915 AGTAATGGACGTATCAGAAAAGCAGGAAGTCAAAGGTCGCCCAGCTGGTCTTAACACAGT 974
Query 955 GAGTTTGCTAAAGGTTGCTTCAAGTGCTCTTGGGTTTGGGCCTCAGACGGCTATGCATCT 1014
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 975 GAATTTGCTAAAGGTTGCTTCAAGTGCTCTAGGGTTTGGGCCTCAGACGGCTATGCATCT 1034
Query 1015 TGCCGAGCGATTGTATACTCAAGGCTTCATAAGCTATCCCCGCACAGAAAGCACAGCCTA 1074
||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1035 TGCAGAGCGATTGTATACTCAAGGTTTCATCAGCTATCCCCGCACAGAAAGCACAGCCTA 1094
Query 1075 TCCCTCTTCATTTGACTTCACAGACACACTCAGAGCACAAGTTAGTAATCCAGTATGGGG 1134
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1095 TCCTTCTTCATTCGACTTCACAGACACACTCAGAGCACAAGTTAGTAATCCAGTATGGGG 1154
Query 1135 TGGTTACGTACAGAGACTGCTCTCAGACAGCTTTCATAAGCCCAAGTCAGGAACTGATGC 1194
|||||||||||||||||||||||||||| | ||||||| ||| |||||||||||||| ||
Sbjct 1155 TGGTTACGTACAGAGACTGCTCTCAGACGGATTTCATATGCCAAAGTCAGGAACTGACGC 1214
Query 1195 AGGAGACCATCCTCCTATCACTCCAATGCGAGCAGCAACCGAGGTCATGGTTGGGGGAGA 1254
|||||||||||||||||||| |||||| |||||||||||||||||||||| || |||||
Sbjct 1215 TGGAGACCATCCTCCTATCACCCCAATGAGAGCAGCAACCGAGGTCATGGTCGGAGGAGA 1274
Query 1255 TGCTTGGCGACTCTATCAGTATGTCTGTCAACATTTTATTGGTACTGTTTCACCTAACTG 1314
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1275 TGCTTGGCGACTCTATCAGTATGTCTGTCAACATTTTCTTGGCACTGTTTCACCTAACTG 1334
Query 1315 CAAATTCATAAGGACTAAAGTGGAATTGTCAATTGGTGGTGAAACTTTCCATTGTACGGG 1374
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1335 CAAATACATAAGGACTAAAGTGGAATTGTCAATTGGTGGAGAAACTTTCCATTGTACGGG 1394
Query 1375 GCAGCGTGTGACAGAAAAGGGATTTACAGCTATAATGCCATGGTCTGCAGTAGATGAGAA 1434
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1395 GCAGCGTGTGACAGAAAAGGGGTTTACAGCTATAATGCCATGGTCTGCAGTAGATGAGAA 1454
Query 1435 AAAACTCCCTTCTTTTCTCAAAGGAGAGAGGATTGAAGTTTTAAGAGTGGAGCTTTACGA 1494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1455 AAAACTCCCTTCTTTTCTCAAAGGAGAGAGGATTGAAGTTTTAAGAGTGGAGCTTTACGA 1514
Query 1495 GGGGAACACTGCGCCTCCGGACTACCTTACTGAGAGTGAGCTGATATCTCTAATGGAGAA 1554
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1515 GGGGAACACTGCGCCTCCGGACTACCTTACTGAGAGTGAGCTGATATCTCTCATGGAGAA 1574
Query 1555 GCATGGCATAGGCACAGATGCATCAATACCTGTGCATATAAACAACATTGGTGAACGTAA 1614
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1575 GCATGGCATAGGCACAGATGCATCAATAGCTGTACATATAAACAACATTGGTGAACGTAA 1634
Query 1615 TTATGTCCAGGTACAAGCTGGGAGGAAATTGGTTCCAACGGCATTGGGAATCACGCTAAT 1674
|||||| ||||| ||| ||||||||||| ||||||||||||| || ||||||||||||||
Sbjct 1635 TTATGTTCAGGTCCAATCTGGGAGGAAAATGGTTCCAACGGCGTTAGGAATCACGCTAAT 1694
Query 1675 AAGAGGCTATCAGTGTATTGATCCGGACCTTTGCTTACCAGACATCCGGAGTTTTATCGA 1734
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1695 AAGAGGCTATCAGTGTATTGATCCAGACCTTTGCTTACCAGACATCCGGAGTTTTATCGA 1754
Query 1735 GCAACAAATCACTCTTGTTGCCAAGGGCCAAGTTGATCATTCACACGTTGTGCAACATGT 1794
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1755 GCAACAAATCACTCTTGTTGCCAAGGGCCAAGCTGATCATTCACACGTTGTGCAGCATGT 1814
Query 1795 GATTCAGCAGTTCCGTCGTAAATTCAGTTATTTTGTTCAACAGATCGAACACATGGATGC 1854
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1815 GATTCAGCAATTCCGGCGTAAATTCAGTTATTTTGTTCAACAGATCGAACACATGGATGC 1874
Query 1855 CCTCTTTGAAGCACAGTTCTCTCCTCTGGCTGATTCTGGTCGTGCTTTAAGCAAATGTGG 1914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1875 CCTCTTTGAAGCACAGTTCTCTCCTCTGGCTGATTCTGGTCGTGCTTTAAGCAAATGTGG 1934
Query 1915 AAAATGCTTGCGTTACATGAAACACATCACAGCAGTCCCACCACGTCTCTTCTGCGGCAC 1974
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1935 AAAATGCTTGCGTTACATGAAACATATCACAGCAGTCCCACCACGTCTCTTCTGCGGCAC 1994
Query 1975 ATGCGAAGAAGTTTATTATCTTCCTCAAAAGGGCACAATCAAGCTATACAAGGAACTCAC 2034
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1995 ATGCGAAGAAGTTTATTATCTTCCTCAAAAGGGCACAGTCAAGCTATACAAGGAACTCAC 2054
Query 2035 ATGTCCTTTAGACAACTTTGAGCTCGTGATCTATTCAGTTCCAGGACCTGAGGGGAAGTC 2094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2055 ATGTCCTTTAGACAACTTTGAGCTCGTGATCTATTCAGTTCCAGGACCTGAGGGGAAGTC 2114
Query 2095 ATTTCCACTATGCCCATACTGCTACAACTCTCCTCCATTTGAAGGCATAGATACACTCTT 2154
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 2115 ATTTCCACTATGCCCATACTGCTACAACTCTCCTCCATTTGAAGGCATAGACACACTTTT 2174
Query 2155 TGGAGCCTCTAAAACGCCCAATGCTCCTGCCAAAACCAAAACCGGTTCAGGCATGCCATG 2214
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2175 TGGAGCCTCTAAGACGCCCAATGCTCCTGCCAAAACCAAAACCGGTGCAGGCATGCCATG 2234
Query 2215 CTCTCTCTGTCCTCATCCCACATGCCAACACTCAGTCAGAAACCAAGGAGTCTGCGCTTG 2274
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2235 TTCTCTCTGTCCTCATCCCACATGCCAACACTCTGTCAGAAACCAAGGAGTCTGCGCTTG 2294
Query 2275 TCCAGAGTGTGAAGGCACGCTCCTCTTGGACCCTGTTAGCTTCCCTAAGTGGAAACTCAA 2334
|||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||
Sbjct 2295 TCCAGAGTGTGAAGGCACGCTCGTCTTGGACCCGGTTAGCTTCCCCAAGTGGAAACTCAA 2354
Query 2335 CTGCAACTTGTGTAGTTGCATCGTTTTGCTTCCGGAAGGTGCTCATCGCATCGCCACCAC 2394
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 2355 CTGCAACTTGTGTAGTTGTATCGTTTTGCTTCCGGAAGGTGCTCATCGCATCACCACCAC 2414
Query 2395 TAGTAACCGCTGTCCCGAGTGCGATTCAGCCATCATAGAGATCGATTTCAACAAGAAAAC 2454
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2415 TAGTAACCGCTGTCCCGAGTGTGATTCAGCCATCATAGAGATCGATTTCAACAAGAAAAC 2474
Query 2455 TACTCCTCTGGAGAACGGAGCCACTCTGCATCAAGGGTGTGTTCTATGTGATGAGTTGCT 2514
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 2475 TACTCCTCTGGAGAACGGAGCCACTCTGCATCAAGGATGTGTTCTATGTGACGAGTTGCT 2534
Query 2515 TCTCTCACTTGTAGAAGTGAAACATGGGAGGTCCTTTGTgaggcgtggaggaaggggaag 2574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2535 TCTCTCACTTGTAGAAGTGAAACATGGGAGGTCCTTTGTGAGGCGTGGAGGAAGGGGAAG 2594
Query 2575 gggacgaggaagaggccgaggcagaggagggagaagaggTTCAAAAGCTGTCGACCCAAA 2634
||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 2595 GGGACGAGGGAGAGGCCGAGGCAGAGGAGGGAGAAGAGGCTCAAAATCTGTCGACCCAAA 2654
Query 2635 AATGAGTTTCAGAGACTTCTGAAACCCTAAACTCTCTGTGTTTATGTTTTTGCGTTACTT 2694
|||||||||||||||||| |||||| ||||||| | ||||||||||| ||||||||||||
Sbjct 2655 AATGAGTTTCAGAGACTTTTGAAACTCTAAACT-T-TGTGTTTATGTCTTTGCGTTACTT 2712
Query 2695 GCAT 2698
||||
Sbjct 2713 GCAT 2716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133995904753
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5