BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482131
Length=2647
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32010.1 | Symbols: CVL1 | CVP2 like 1 | chr2:13624792-13629... 3397 0.0
AT1G05470.1 | Symbols: CVP2 | DNAse I-like superfamily protein ... 881 0.0
> AT2G32010.1 | Symbols: CVL1 | CVP2 like 1 | chr2:13624792-13629146
FORWARD LENGTH=2745
Length=2745
Score = 3397 bits (1839), Expect = 0.0
Identities = 2075/2186 (95%), Gaps = 27/2186 (1%)
Strand=Plus/Plus
Query 478 AATGAGAGACGATAAATCCAAGAAAAACAAGTTGTCATGGTCCAAGAAGATGGTGAGGAA 537
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 552 AATGAGAGACGATAAAACCAAGAAAAGCAAGTTGTCATGGTCCAAGAAGATGGTGAGGAA 611
Query 538 ATGGTTCAACATCAAAAGCAAAACTGAAAAGTTTCAAGCAGATGTTTCTGATCCTCAAGG 597
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 612 ATGGTTCAACATCAAAAGCAAAACTGAAAAGTTTCAAGCAGATGTTTCTCTTCCTCAAGG 671
Query 598 AGTTGAAGTTGAGCACAGAAACAGCTTCTCAGAGAGAGAGCCCTGCACAATCAAGAAGAG 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 AGTTGAAGTTGAGCACAGAAACAGCTTCTCAGAGAGAGAGCCCTGCACAATCAAGAAGAG 731
Query 658 CAAAACTGAAAAACTCAATAAGAACTGGGAGCAGCAAGCTAGACAAAGGAAAATGAACTA 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 CAAAACTGAAAAACTCAATAAGAACTGGGAGCAGCAAGCTAGACAAAGGAAAATGAACTA 791
Query 718 TGAAAATCCCAGAATCATTGATGTCCAAAACCACAGCATCTTTGTAGCTACATGGAACGT 777
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 792 TGAAAATCCCAGAATCATTGATGTCCAAAACCACAGCATCTTCGTAGCTACATGGAACGT 851
Query 778 TGCTGGACGCTCTCCTCCGGAAGATCTAAACCTCGACGAATGGCTTCATTCCTCTGCTCC 837
|||||||||||||||||| |||||| ||||||||||||||||||||||||| || |||||
Sbjct 852 TGCTGGACGCTCTCCTCCTGAAGATTTAAACCTCGACGAATGGCTTCATTCTTCAGCTCC 911
Query 838 TGCAGATATATACGTTCTCGGGTTCCAAGAGATTGTTCCTCTTAATGCTGGTAATGTTCT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 TGCAGATATATACGTTCTCGGGTTCCAAGAGATTGTTCCTCTTAATGCTGGTAATGTTCT 971
Query 898 TGGAGCTGAAGACAATGGTCCTGCTAAGAAATGGCATTCCCTCATCAGGAAAACACTCAA 957
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 972 TGGAGCTGAAGACAATGGTCCTGCTAAGAAATGGCATTCACTCATCAGGAAAACGCTCAA 1031
Query 958 TAACCTCCCCGG-GACAAGCAGTGTC-TGTCATACTCCGTCGCCTATTCCTGTCCCCATT 1015
|||||| ||||| | ||||||||| | || |||||||| |||||||||||||||||||||
Sbjct 1032 TAACCTTCCCGGAG-CAAGCAGTG-CATGCCATACTCCATCGCCTATTCCTGTCCCCATT 1089
Query 1016 GCAGAGATTGATGCTGATTTCTCTGGATCTTCGAGGCAAAAGAACGAGACTTTCTTCAAC 1075
||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1090 GCAGAGATTGATGCTGACTTCTCAGGATCTTCAAGGCAAAAGAACGAGACTTTCTTCAAC 1149
Query 1076 AGAAGGTCTTTCCAGACCCCGAGCGTATGGAGTATGGAAGAGAATGACCCTTCTATCTCA 1135
||||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1150 AGAAGATCTTTCCAGACGCCGAGCGTATGGAGTATGGAGGAGAATGACCCTTCGATCTCA 1209
Query 1136 CAGCCACGGCTTGAACGTCGTTTCAGCGTGTGTGATCGCGTATTCTTTAGTCATAGACCA 1195
|| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1210 CAACCACGGCTTGACCGTCGTTTCAGCGTGTGTGATCGCGTATTCTTCAGTCATAGACCA 1269
Query 1196 AGTGATTTTGACCCGAGCTTCAGGTGTAGTCACAGGCCTAGTGATTACTCAAGAAGGCCT 1255
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1270 AGTGATTTTGACCCGAGCTTCAGGTGTGGTCACAGGCCTAGTGATTACTCAAGAAGGCCT 1329
Query 1256 AGTGATTACTCTAGACCAAGCGATTATTACTCTAGGCCGAGCAATTATTCTCGGCCTAGT 1315
||||||||||||||||| || |||||||||||||||||||| || |||||||||||||||
Sbjct 1330 AGTGATTACTCTAGACCGAGTGATTATTACTCTAGGCCGAGTAACTATTCTCGGCCTAGT 1389
Query 1316 GATGTTTCCCGGTGGGGCTCCTCGGATGATGATAACGGCCCAGGGGATTCTCCCAGTACA 1375
||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1390 GATGTTTCCAGGTGGGGCTCCTCGGATGATGATAACGGCCCAGGGGATTCTCCAAGCACA 1449
Query 1376 TTCTTGAATTCACCGGGGTCATGTCTTGGTTCTGCATCGA-CTGAAAACGGTTACAGAAT 1434
|| ||||||||||||||||||| ||||||||||||| | | | ||||||||||||||||
Sbjct 1450 TTTTTGAATTCACCGGGGTCATTTCTTGGTTCTGCAGCAAAC-GAAAACGGTTACAGAAC 1508
Query 1435 CTCGTGGAACTCATCTCAGTACTGTTTGGTCGCAAGTAAACAGATGGTTGGTATCTTTTT 1494
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1509 CCCGTGGAACTCATCGCAGTACTGTTTGGTCGCAAGTAAACAGATGGTTGGTATCTTTTT 1568
Query 1495 AACAATTTGGGTGAAAAGCGAGTTACGAGAACACGTCAAGAACATGAAAGTATCTTGTGT 1554
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1569 AACCATTTGGGTGAAAAGCGAGTTACGAGAACACGTCAAGAACATGAAAGTATCTTGTGT 1628
Query 1555 TGGTAGAGGATTAATGGGTTATCTCGGAAATAAGGGATCAATCTCAATTAGTATGTTGCT 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 TGGTAGAGGATTAATGGGTTATCTCGGAAATAAGGGATCAATCTCAATTAGTATGTTGCT 1688
Query 1615 TCATCAAACAAGTTTCTGCTTCGTCTGCACTCATTTGACCTCGGGACAAAAAGGAGGTGA 1674
|||||||||||| |||||||| || ||||| |||||||||||||||||||||| ||||||
Sbjct 1689 TCATCAAACAAGCTTCTGCTTTGTGTGCACCCATTTGACCTCGGGACAAAAAGAAGGTGA 1748
Query 1675 TGAGCTAAGGAGAAACTCCGATGTCATGGAGATACTCAAGAAAACAAGGTTTCCTCGAGT 1734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1749 TGAGCTAAGGAGAAACTCCGATGTCATGGAGATACTCAAGAAAACAAGGTTTCCTCGAGT 1808
Query 1735 CCAGAGTTCTGCAGACGAGAAGTCCCCTGAGAATATCCTTCAGCATGATCGGGTAATATG 1794
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1809 CCAGAGTTCTGCGGACGAGAAGTCCCCTGAGAATATCCTTCAGCATGATCGGGTAATATG 1868
Query 1795 GCTCGGGGATCTGAACTACCGGATAGCGCTCTCTTACCGATCCGCAAAAGCGCTAGTCGA 1854
||||||||||||||||||||| ||||| ||||||||||||||||||||||| || |||||
Sbjct 1869 GCTCGGGGATCTGAACTACCGAATAGCACTCTCTTACCGATCCGCAAAAGCACTTGTCGA 1928
Query 1855 GATGCAAAACTGGAGGGCATTACTAGAGAACGATCAGTTACGGATAGAGCAGAAACGAGG 1914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1929 GATGCAAAACTGGAGGGCATTACTAGAGAACGATCAGTTACGGATAGAGCAGAAACGAGG 1988
Query 1915 GCATGTGTTTAAAGGATGGAACGAAGGAAAGATTTACTTCCCACCAACTTACAAATACTC 1974
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1989 ACATGTGTTTAAAGGATGGAACGAAGGAAAGATATACTTCCCACCAACTTACAAATACTC 2048
Query 1975 AAATAACTCGGATAGATATGCAGGAGGTGATTTGCATCCAAAGGAGAAACGTCGTACTCC 2034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2049 AAATAACTCGGATAGATATGCAGGAGGTGATTTGCATCCAAAGGAGAAACGTCGTACTCC 2108
Query 2035 TGCTTGGTGTGATCGGATACTATGGCATGGAGAAGGTCTACATCAGTTATCTTATGTAAG 2094
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2109 TGCTTGGTGTGATCGAATACTATGGCATGGAGAAGGACTACATCAGTTATCTTATGTAAG 2168
Query 2095 AGGGGAGTCGCGGTTTTCAGATCATAGACCGGTTTATGGCATATTCAGCGCAGAGGTTGA 2154
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2169 AGGGGAGTCACGGTTTTCTGATCATAGACCGGTTTATGGCATATTCAGCGCAGAGGTTGA 2228
Query 2155 GTCAAATCACAAGAGATTAAAGCGAACCACGAGTCATTCCACTGCACGGGTCGAAGCTGA 2214
||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||
Sbjct 2229 GTCAAATCACAAGAGATCAAAGCGAACCAATAGTCACTCCACTGCACGGGTCGAAGCTGA 2288
Query 2215 AGAACTCTTACCTTACGCCCGCGGATACACCGAGCTAACATTTTTCTAAAAGAAAATCGA 2274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2289 AGAACTCTTACCTTACGCCCGCGGATACACCGAGCTAACATTTTTCTAAAAGAAAATTGA 2348
Query 2275 AAAGAAGT-T-CTTTACGGGTAAATTAAAGTGtttttt-tACGAGTGTTGAAGCCTTGAG 2331
|||| | | |||||||| | ||||||||| |||||| | ||| |||||||||||||||
Sbjct 2349 AAAGCCTTCTTCTTTACGG-TCAATTAAAGTTTTTTTTGTTCGAATGTTGAAGCCTTGAG 2407
Query 2332 GAGTGATGATGATGGAGACATTTCATTGCTCCTTTTAACACAAAAGGAAACAAGA-AA-A 2389
||||| ||||||||||||||||||||||||||||||||||||| |||||||| | || |
Sbjct 2408 GAGTG--GATGATGGAGACATTTCATTGCTCCTTTTAACACAAA-GGAAACAA-ATAACA 2463
Query 2390 GGTGTATAAAGGATTGTAATTTTGTCTTGGTTAACAGAATTTCGCATATCAAACCGGttt 2449
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2464 GGTGTATAAAGGATTGTAATTTTGTCTTGGTTAATAGAATTTCGCATATCAAACCGGTTC 2523
Query 2450 ttttATTTATCATGGGAGGACTTAC-ATTTAATA--AAACttttttttGTGCAGGATTAT 2506
||| |||||||||| |||| | | | |||| | ||| |||| ||| ||||||||
Sbjct 2524 TTTCATTTATCATGTCAGGAGT-AGGAGTTAAAAGTAAA-TTTTACA-GTGTAGGATTAT 2580
Query 2507 TAAACTGACAGATGGAAGGTTTTTTA-A-TTC---ATCAGTCTTTTTAGGGATAGATTTT 2561
||||||||||||||||||||||||| | ||| |||||||||||||||||||| ||||
Sbjct 2581 TAAACTGACAGATGGAAGGTTTTTTTTAGTTCTTCATCAGTCTTTTTAGGGATAGTTTTT 2640
Query 2562 GATAATATCATTATTGTAAATTGAAGTGTGTTCCCGAGACAATGATAGTGTAATGCTTGT 2621
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2641 GATAATATTATTATTGTAAATTGAAGTGTGTTCCCGAGACAATGATAGTGTAATGCTTGT 2700
Query 2622 TGTATAAGTAAGATTTAGCCGTTTAA 2647
||||||||||||||||||||||||||
Sbjct 2701 TGTATAAGTAAGATTTAGCCGTTTAA 2726
Score = 291 bits (157), Expect = 3e-77
Identities = 380/474 (80%), Gaps = 70/474 (15%)
Strand=Plus/Plus
Query 45 TCTCTCTCTCATaga-agaagaagaagaagaaTCAGGACC-AAGTAGAAAAGCTTAAACC 102
||||| |||| | | ||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 75 TCTCTTTCTCTTTCATAGAAGAAGAAGAAGATTCAGGACCTAAGTAGAAAAGCTTAAACC 134
Query 103 AAGCACTCTCTCTTCAAAGATCAAATCACACTTT-TTTGGTT--TCTCTCTCCAAAATCT 159
| |||||||||||| || ||| | ||| ||| |||| || ||||||||||||||||
Sbjct 135 -ACCACTCTCTCTTC-AA-ATC--A-CAC-TTTTGTTTGTTTCCTCTCTCTCCAAAATCT 187
Query 160 TCCTCATTGTC--C--TG-------CTTCAAGAATC-CTTGtctctt-caac-ac-tttt 204
| ||||||||| | || ||||||||| | |||||||||| |||| || ||||
Sbjct 188 TTCTCATTGTCTTCTTTGCCTCCTCCTTCAAGAA-CTCTTGTCTCTTCCAACAACTTTTT 246
Query 205 tctcttcttattctaaaaaccaatcttcacttcttctctcattcgtctctGTTTGGGAAA 264
|| ||||||||||| |||||||||||||| | | ||||||| ||||| |||
Sbjct 247 TC-CTTCTTATTCTGAAAACCAATCTTCA---C-T-TCTCATTTGTCTC--------AAA 292
Query 265 A-ACTAAAACCCATTTCTCT-ATTCCTGT--CT-----C----G--GAGTGACA-AAAAC 308
| ||| | ||||||||| || |||||||| || | | ||| |||| |||||
Sbjct 293 ACACT-ATACCCATTTC-CTAATTCCTGTCCCTGAGAGCATTAGTAGAGAGACACAAAAC 350
Query 309 CCTTTTAATCCGAGA-CCAACTTGTCTTTGCTTTTAGCTTCTGTCTGATTC-A-C--AGG 363
| |||||||| | | ||||||||||||| | ||||||||||||||||||| | | |||
Sbjct 351 AC-TTTAATCCTA-ATCCAACTTGTCTTTAC-TTTAGCTTCTGTCTGATTCAATCAAAGG 407
Query 364 AGAAGAAACAAGTCAATTCTTGTCAATTATTTTTAAACAGTGATTCAACTAAAAACCCCA 423
| |||||| ||| ||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 408 ACAAGAAAGAAGCCAAATCTTGTCAATTCTTTTTAAACAGTGATTCAACTAAAAACCCCA 467
Query 424 AATTTGTTCGATTTGATCTCTGTTGTCttttttttttCTGGATGGATTGAGTCT 477
|||| ||| |||||||||||| ||||||| ||||||| ||||||||||||||||
Sbjct 468 AATTAGTT-GATTTGATCTCTATTGTCTTCTTTTTTT-TGGATGGATTGAGTCT 519
Score = 73.1 bits (39), Expect = 1e-11
Identities = 49/54 (91%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 1 ATCCACTGCTTTTACTTTGCCGTTTCACTGAGAACGAGGCTTACTCTCTCTCTC 54
|||| |||||||||||||||||||||||||||||||||||| ||| ||| |||
Sbjct 1 ATCCTCTGCTTTTACTTTGCCGTTTCACTGAGAACGAGGCTCGCTCACTCACTC 54
> AT1G05470.1 | Symbols: CVP2 | DNAse I-like superfamily protein
| chr1:1607357-1611703 REVERSE LENGTH=2696
Length=2696
Score = 881 bits (477), Expect = 0.0
Identities = 847/1024 (83%), Gaps = 31/1024 (3%)
Strand=Plus/Plus
Query 1249 AAGGCCTAGTGATTACTCTAGACCAAGCGATTATTACTCTAGGCCGAGCAATTATTCTCG 1308
||| || ||||| |||||||||||||| ||||| |||||||| ||||| ||||||| ||
Sbjct 1270 AAGACCGAGTGACTACTCTAGACCAAGTGATTACTACTCTAGACCGAGTGATTATTCACG 1329
Query 1309 GCCTAGTGATGTTTCCCGGTGGGGCTCCTCGGATGATGATAACGGCCCAGGGGATTCTCC 1368
||| ||||| ||| | || || || ||||||||||| || | |||||||||||
Sbjct 1330 GCCAAGTGA--CTTCTC---AAGG-TCTTCAGATGATGATAATGGTCTTGGGGATTCTCC 1383
Query 1369 CAGTACAT-TCTTGAATTCACCGGGGTCATGTCTTGGTTCTGCATCGACTGAAAACGGTT 1427
|| || | ||||| | ||||| || | || | | | ||| || || || || |
Sbjct 1384 AAGCAC-TGTCTTGTACTCACC-AGG---T-TC-T-G--CAGCA--AAC-GAGAATGGAT 1430
Query 1428 ACAGAATCTCGTGGAACTCATCTCAGTACTGTTTGGTCGCAAGTAAACAGATGGTTGGTA 1487
| || ||| | |||||||| || ||||| ||||| || || || ||||| ||||| |||
Sbjct 1431 ATAGGATCCCATGGAACTCTTCGCAGTATTGTTTAGTTGCTAGCAAACAAATGGTGGGTG 1490
Query 1488 TCTTTTTAACAATTTGGGTGAAAAGCGAGTTACGAGAACACGTCAAGAACATGAAAGTAT 1547
|||| ||||| |||||||||||||| ||| || |||||||||||||||||||||||||||
Sbjct 1491 TCTTCTTAACCATTTGGGTGAAAAGTGAGCTAAGAGAACACGTCAAGAACATGAAAGTAT 1550
Query 1548 CTTGTGTTGGTAGAGGATTAATGGGTTATCTCGGAAATAAGGGATCAATCTCAATTAGTA 1607
|||||||||| || ||| | ||||||||||| ||||||||||||||||||||||| || |
Sbjct 1551 CTTGTGTTGGCAGGGGACTGATGGGTTATCTTGGAAATAAGGGATCAATCTCAATAAGCA 1610
Query 1608 TGTTGCTTCATCAAACAAG-TTTCTGCTTCGTCTGCACTCATTTGACCTCGGGACAAAAA 1666
||||||| ||||||||||| ||| |||||||| || || || ||||| ||||||||||||
Sbjct 1611 TGTTGCTCCATCAAACAAGCTTT-TGCTTCGTTTGTACGCACTTGACTTCGGGACAAAAA 1669
Query 1667 GGAGGTGATGAGCTAAGGAGAAACTCCGATGTCATGGAGATACTCAAGAAAACAAGGTTT 1726
| ||| |||||||||| ||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 1670 GAAGGCGATGAGCTAAAGAGAAACTCTGATGTCATGGAGATACTGAAGAAAACGAGGTTT 1729
Query 1727 CCTCGAGTCCAGAGTTCTGCAG-ACGAGAAGTCCCCTGAGAATATCCTTCAGCATGATCG 1785
|| || || ||||||| | || | || |||||||||||||| |||||||||||||| ||
Sbjct 1730 CCGCGCGTTAAGAGTTCAG-AGGAAGAAAAGTCCCCTGAGAACATCCTTCAGCATGACCG 1788
Query 1786 GGTAATATGGCTCGGGGATCTGAACTACCGGATAGCGCTCTCTTACCGATCCGCAAAAGC 1845
|||||||||||| || ||||| |||||||| ||||| || ||||| ||||| || |||||
Sbjct 1789 GGTAATATGGCTTGGCGATCTAAACTACCGTATAGCACTGTCTTATCGATCTGCCAAAGC 1848
Query 1846 GCTAGTCGAGATGCAAAACTGGAGGGCATTACTAGAGAACGATCAGTTACGGATAGAGCA 1905
||| || |||||||| || ||||| || ||||| || || || |||||| | || |||||
Sbjct 1849 GCTTGTTGAGATGCAGAATTGGAGAGCTTTACTTGAAAATGACCAGTTAAGAATTGAGCA 1908
Query 1906 GAAACGAGGGCATGTGTTTAAAGGATGGAACGAAGGAAAGATTTACTTCCCACCAACTTA 1965
|||||||| ||||||||||| |||||||| |||||||||||||| ||||||||||| ||
Sbjct 1909 AAAACGAGGCCATGTGTTTAAGGGATGGAATGAAGGAAAGATTTATTTCCCACCAACGTA 1968
Query 1966 CAAATACTCAAATAACTCGGATAGATA-TGCAGGAGGTGATTTGCATCCAAAGGAGAAAC 2024
||| ||||| | ||||| |||||||| | | |||| |||||||||||| ||||||||||
Sbjct 1969 CAAGTACTCGAGGAACTCAGATAGATACT-CTGGAGATGATTTGCATCCCAAGGAGAAAC 2027
Query 2025 GTCGTACTCCTGCTTGGTGTGATCGGATACTATGGCATGGAGAAGGTCTACATCAGTTAT 2084
|||| |||||||||||||||||| ||||| | ||| ||| ||||| || ||||||||||
Sbjct 2028 GTCGCACTCCTGCTTGGTGTGATAGGATATTGTGGTTTGGTGAAGGACTGCATCAGTTAT 2087
Query 2085 CTTATGTAAGAGGGGAGTCGCGGTTTTCAGATCATAGACCGGTTTATGGCATATTCAGCG 2144
||||||||||||| ||||| ||||| || |||||||||||||| || ||||| ||| | |
Sbjct 2088 CTTATGTAAGAGGAGAGTCACGGTTCTCTGATCATAGACCGGTCTACGGCATTTTCTGTG 2147
Query 2145 CAGAGGTTGAGTCAAATCACAAGAG-ATTAAAGCGAACCACGAGTCATTCCACTGCACGG 2203
|||||||||||||| ||| || || || ||||||||| |||||| | ||| || |||||
Sbjct 2148 CAGAGGTTGAGTCAGCTCATAATAGGAT-AAAGCGAACAACGAGTTACTCCGCTTCACGG 2206
Query 2204 GTCGAAGCTGAAGAACTCTTACCTTACGCCCGCGGATACACCGAGCTAA-CATTTTTCTA 2262
||| |||||||||| |||||||||||| |||| |||||||||||||| | | || |||||
Sbjct 2207 GTCCAAGCTGAAGAGCTCTTACCTTACTCCCGTGGATACACCGAGCTCAGC-TTCTTCTA 2265
Query 2263 -AAA 2265
|||
Sbjct 2266 GAAA 2269
Score = 658 bits (356), Expect = 0.0
Identities = 670/817 (82%), Gaps = 39/817 (5%)
Strand=Plus/Plus
Query 478 AATGAGAGACGATAAATCCAAGAAAAACAAGTTGTCATGGTCCAAGAAGATGGTGAGGAA 537
||||||||| || |||||||||| || ||| || ||||||||||||||||||| |||||
Sbjct 412 AATGAGAGAAGAGAAATCCAAGACTAATAAGCTGGCATGGTCCAAGAAGATGGTAAGGAA 471
Query 538 ATGGTTCAACATCAAAAGCAAAACTGAAAAGTTTCAAGCAGATGTTTCTGATCCT-CAAG 596
||||||||| |||||||||||||| || ||||||||||||||| | || | || | |
Sbjct 472 ATGGTTCAATATCAAAAGCAAAACAGAGGAGTTTCAAGCAGATGATCCTTCTTCTGC-TG 530
Query 597 GAGTTGAAGTTGAGCACAGAAACAGCTTCTCAG-AGAGAGAGC-CC-TGCACAATCAAGA 653
|| ||||||| ||||| |||| ||||| |||| |||| ||| || | |||||||||||
Sbjct 531 GAATTGAAGTAGAGCATAGAAGTAGCTTTTCAGCTGAGAAAGCACCTTCCACAATCAAGA 590
Query 654 AGAGCAAAACTGAAAAACTCAATAAGAACTGGGAGCAGCAAGCTAGACAAAGGAAAATGA 713
| | ||||||||| ||||||| |||||||||||||||||||||| | ||||||| |||||
Sbjct 591 ATACCAAAACTGAGAAACTCAGTAAGAACTGGGAGCAGCAAGCTCGGCAAAGGAGAATGA 650
Query 714 ACTATGAAAATCCCAGAATCATTGATGTCCAAAACCACAGCATCTTTGTAGCTACATGGA 773
| ||||| ||||| || |||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 651 ATTATGAGAATCCTAGGATCATTGATGTCCAAAACTACAGCATCTTTGTGGCTACATGGA 710
Query 774 ACGTTGCTGGACGCTCTCCTCCGGAAGATC-TAAACCTCGACGAATGGCTTCATTCCTCT 832
|||| ||||||||||||||||| ||| | ||||||| || || ||||||||||| ||
Sbjct 711 ACGTAGCTGGACGCTCTCCTCCTTCAGA-CTTAAACCTTGATGAGTGGCTTCATTCATCA 769
Query 833 GCTCCTGCAGATATATACGTTCTCGGGTTCCAAGAGATTGTTCCTCTTAATGCTGGTAAT 892
|||||||| ||||| || || ||||| ||||||||||||||||||||||||||||| |||
Sbjct 770 GCTCCTGCTGATATCTATGTACTCGGATTCCAAGAGATTGTTCCTCTTAATGCTGGAAAT 829
Query 893 GTTCTTGGAGCTGAAGACAATGGTCCTGCTAAGAAATGGCAT-TCCCTCATCAGGAAAAC 951
|| |||||||||||||||||||| |||||| ||||||||| | || || ||| | |||||
Sbjct 830 GTCCTTGGAGCTGAAGACAATGGACCTGCTCAGAAATGGC-TCTCTCTTATCCGAAAAAC 888
Query 952 ACTCAATAACCTCCCCGGGACAAGC--A----GTG-TCTGTCATACTCCGTCGCCTATTC 1004
|| ||||||| || || || ||| | | | | | ||| || || || ||||| |
Sbjct 889 GCTTAATAACCGACCAGGAACTAGCGGAACCAGCGGT-TATCACACGCCTTCCCCTATCC 947
Query 1005 CTGTCCCCATTGCAGAGATTGATGCTGATTTCTCTGGATCTTCGAGGCAAAAGAACGAGA 1064
|||| || || |||||| ||||||||||||||||||||||| | |||||||||||| |
Sbjct 948 CTGTGCCTATGGCAGAGCTTGATGCTGATTTCTCTGGATCTACAAGGCAAAAGAACTCTA 1007
Query 1065 CTTTCTTCAACAGAAGGTCTTTCCAGACCCCGAGCGTATGGAGTATGGAAGAGAATGACC 1124
|||||||| ||||| ||||||| ||||||||||| || | | |||||| || | ||
Sbjct 1008 CTTTCTTCCACAGACGGTCTTTTCAGACCCCGAG--TA-GTAC-ATGGAAT-GA-T--CC 1059
Query 1125 CTTCTATCTCA-CAGCCACGG-CTTGAACGTCGTTTCAGCGTGTGTGATCGCGTATTCTT 1182
|||||| || |||||| || ||||| |||||||||||||| ||||| || || |||||
Sbjct 1060 -TTCTAT-TCCTCAGCCA-GGTCTTGACCGTCGTTTCAGCGTCTGTGACCGTGTCTTCTT 1116
Query 1183 TAGTCATAGACCAAGTGATTTTGACCCGAGCTTCAG-G-T-GTAGT--CA--CA--GGCC 1233
|| || || ||||||||||| |||||||| ||| | | | | || || || ||||
Sbjct 1117 CAGCCACAGGCCAAGTGATTTCGACCCGAGTTTCCGTGGTAGCAGCAGCAGTCATAGGCC 1176
Query 1234 TAGTGATTACTCAAGAAGGCCTAGTGATTACTCTAGA 1270
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Sbjct 1177 TAGTGATTACTCTAGAAGGCCTAGTGATTATTCTAGA 1213
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 131437390660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5