BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482133
Length=1771
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32040.1 | Symbols: | Major facilitator superfamily protein... 2630 0.0
> AT2G32040.1 | Symbols: | Major facilitator superfamily protein
| chr2:13635106-13637836 FORWARD LENGTH=1937
Length=1937
Score = 2630 bits (1424), Expect = 0.0
Identities = 1606/1695 (95%), Gaps = 8/1695 (0%)
Strand=Plus/Plus
Query 1 ATGGCGAGTCTCAATCTTTTCTCTATCTCAATCTCACCTTCTCAAATTACACTTTTGCCA 60
|||||||||| | ||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 11 ATGGCGAGTCGCTCTCTTTTCTCTATCTCAATCTCACCTTCTCAATTTACAGTTTTGCCA 70
Query 61 TCCATCAACAACGGGACACGACGCCTTGCTATCGCCGCCCGATCTCACAGTGTACCACGC 120
||||||||||||| || ||||||||||||||||||||| ||||||||| | || |||||
Sbjct 71 TCCATCAACAACGAGAGACGACGCCTTGCTATCGCCGCTCGATCTCACCGACTATCACGC 130
Query 121 CGGAAGATTCGTAAGAGGCCTCCGGACAGAGATATGTCCTCCATAGTTTCAATCCCGGAG 180
||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 131 CGGAAGATTCGTAAGAGACCTCCTGATAGAGATATGTCCTCCATAGTTTCAATCCCGGAG 190
Query 181 CTTCCTCGCCGGCGCGATTCTGAGGAAAGCCTGCTTCTAGATTCTCGAATCAGTGTAGCT 240
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 191 CTTCCTCGCCGGCGGGATTCTGAGGAAAGCCTGCTTTTAGATTCTCGAATCAGTGTAGCT 250
Query 241 GAAGGAGATACATCGAATACAAATGTAGAAGAAGACAGAG--A-TACTTCTAGTATTAGA 297
||||||||||||||||||||| ||||||||| |||||||| | ||||||||||||||||
Sbjct 251 GAAGGAGATACATCGAATACAGATGTAGAAGGAGACAGAGATACTACTTCTAGTATTAGA 310
Query 298 ACACAGCCT---CCTCGTAAAGAAAGAAATCTTAGTATCACCAGAAGCAAATTCTACGGT 354
||||||||| |||||||||| |||||||||||||| || ||||| |||||||||||||
Sbjct 311 ACACAGCCTCCCCCTCGTAAAGGAAGAAATCTTAGTAGCAGCAGAATCAAATTCTACGGT 370
Query 355 GTTGAATTATCACCGGACAATGTTGCTGTAGCAATGGTGTATTTTGTTCAAGGTGTTTTA 414
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GTTGAATTATCACCAGATAATGTTGCTGTAGCAATGGTGTATTTTGTTCAAGGTGTTTTA 430
Query 415 GGACTCGCGAGGCTCGCTGTTAGTTTCTATTTAAAAGATGATTTGCATCTTGATCCTGCT 474
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 431 GGACTCGCTAGGCTCGCTGTTAGTTTCTATTTAAAAGATGACTTGCATCTTGATCCTGCT 490
Query 475 GAGACAGCTGTGATTACGGGTCTTTCTTCGTTGCCGTGGCTTGTTAAGCCTCTCTATGGT 534
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 491 GAGACAGCTGTGATAACGGGTCTTTCTTCATTGCCGTGGCTTGTTAAGCCTCTCTATGGT 550
Query 535 TTTATCAGTGATTCAGTGCCTCTATTTGGCTATCGAAGGAGGTCATATCTAGTTCTCTCG 594
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 551 TTTATCAGTGATTCAGTGCCTCTATTTGGTTATCGAAGGAGGTCATATCTAGTTCTCTCG 610
Query 595 GGACTTCTTGGTGCATTTTCGTGGAGTTTGATGGCTGCTTTTGTTGACAGTAAATATAGT 654
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 611 GGACTTCTTGGTGCATTTTCTTGGAGTTTGATGGCTGGTTTTGTTGACAGTAAATATAGT 670
Query 655 GCTGCTTTTTGTATACTTCTCGGTTCCCTCTCTGTTGCCTTTTCTGATGTTGTAGTAGAC 714
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 671 GCTGCTTTTTGTATACTTCTCGGTTCCCTCTCTGTCGCCTTTTCTGATGTTGTAGTAGAC 730
Query 715 TCAATGGTAGTGGAACGGGCTCGTGGTGAGTCACAAAGCGTGTCGGGATCGCTGCAGTCT 774
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 731 TCAATGGTAGTGGAACGGGCTCGTGGTGAGTCACAAAGCGTGTCAGGATCGCTGCAGTCT 790
Query 775 TTGTGCTGGGGATCCTCAGCTTTTGGTGGAATTGTGAGTTCCTACTTCAGCGGCTCCCTG 834
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 791 TTGTGCTGGGGATCCTCAGCTTTTGGTGGAATTGTGAGTTCCTACTTTAGCGGCTCCCTG 850
Query 835 GTGGAGTCATATGGTGTGAGGTTTGTATTTGGGGTGACAGCTTTACTACCCTTGATAACT 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 GTGGAGTCATATGGTGTGAGGTTTGTATTTGGGGTGACAGCTTTACTACCCTTGATAACT 910
Query 895 TCAGCAGTTGCTGTTCTCGTGAACGAACAACGTGTGGTCAAACCAGCATTAGGGCAGAAA 954
||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||
Sbjct 911 TCAGCAGTTGCTGTTCTCGTGAATGAACAACGTGTGGTCAGACCAGCATCAGGGCAGAAA 970
Query 955 GAGAACATAAC-CTTGGTCAGTCCTGGCTTTCTTCAGACCTCGAGGCAGAACATGATTCA 1013
||||| ||||| || | |||||||||| |||||||||||||| | |||||||||||||||
Sbjct 971 GAGAATATAACGCT-GCTCAGTCCTGGTTTTCTTCAGACCTCAAAGCAGAACATGATTCA 1029
Query 1014 GCTTTGGAGTGCCATTAAGCAACCAAATGTTTTTCTCCCGACGTTATTTATCTTCTTATG 1073
||| ||| |||||||||||||||| |||||||||||||| || |||||||| ||||||||
Sbjct 1030 GCTATGGGGTGCCATTAAGCAACCGAATGTTTTTCTCCCCACCTTATTTATATTCTTATG 1089
Query 1074 GCAAGCCACACCACACTCGGATTCTGCAATGTTTTACTTCACTACGAACAAACTCGGCTT 1133
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1090 GCAAGCCACACCACACTCAGATTCTGCAATGTTTTACTTCACAACGAACAAACTCGGTTT 1149
Query 1134 TACTCCGGAGTTTCTAGGACGAGTTAAACTTGTGACCTCAATTGCCTCATTGCTTGGAGT 1193
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 TACCCCGGAGTTTCTGGGACGAGTTAAACTTGTGACCTCAATTGCCTCATTGCTTGGAGT 1209
Query 1194 AGGACTGTACAATGGATTCCTGAAGACTGTTCCTTTGAGAAAAATCTTTCTCGTGACGAC 1253
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1210 AGGACTGTACAATGGATTCCTGAAGACTGTTCCATTGAGAAAAATCTTTCTCGTGACGAC 1269
Query 1254 AATTTTTGGCACGGGTCTTGGGATGACTCAGGTTATCCTCGTGTCAGGTTTTAACAGACA 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1270 AATTTTTGGCACGGGTCTTGGGATGACTCAGGTTATCCTCGTGTCAGGTTTTAACAGACA 1329
Query 1314 GTTGGGAATTAGCGACGAGTGGTTTGCTATCGGAGACTCTCTAATCCTAACAGTCCTTGC 1373
|||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1330 GTTGGGGATTAGCGACGAATGGTTTGCTATAGGAGACTCTCTAATCCTAACAGTCCTTGC 1389
Query 1374 TCAGGCTTCATTCATGCCGGTTCTTGTGTTAGCAGCAAGATTATGTCCAGAAGGGATGGA 1433
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1390 TCAGGCTTCATTCATGCCGGTTCTTGTGTTAGCAGCGAGATTATGTCCAGAAGGAATGGA 1449
Query 1434 AGCAACTCTCTTTGCTACACTCATGTCAATTTCTAATGGAGGCAGTGTTCTAGGTGGGCT 1493
||||||||| || ||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1450 AGCAACTCTGTTCGCTACACTCATGTCAATCTCTAACGGAGGCAGTGTTCTAGGTGGGCT 1509
Query 1494 TATGGGTGCAGGGCTGACTCAAGTTTTCGGCATCACAAAAGACAGTTTTGGTAACCTATC 1553
|||||||||||| |||||||||| |||||||| |||| |||||||||||||||| ||||
Sbjct 1510 TATGGGTGCAGGACTGACTCAAGCATTCGGCATTACAAGAGACAGTTTTGGTAACTTATC 1569
Query 1554 TACGCTTATTATCCTATGCAATCTTAGCTCATTGCTCCCTCTGCCTCTTCTCGGTCTTTT 1613
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1570 AACACTTATTATCCTCTGCAATCTTAGCTCATTGCTCCCTCTGCCTCTTCTCGGTCTTTT 1629
Query 1614 ACCACAAGATTCTCCAGATACTCTGGCTAAAGATGATGCAGACGTGGAGATGAAGTCCAA 1673
||| | |||||||||||||||||| |||||||||| |||||||| ||||||||||||||
Sbjct 1630 ACCGCGAGATTCTCCAGATACTCTTACTAAAGATGACGCAGACGTTGAGATGAAGTCCAA 1689
Query 1674 TTAGGGAACATGATG 1688
||| |||| ||||||
Sbjct 1690 TTAAGGAAGATGATG 1704
Score = 84.2 bits (45), Expect = 4e-15
Identities = 49/51 (96%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 1689 GTTCTGTGTATTCAGTTCCAACCCTGTTACTACTTGAGAAGAATGAAGCAG 1739
||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1745 GTTCTGTGTATTCAGTTCCAACCCTGTTATTACTTGAAAAGAATGAAGCAG 1795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87599951025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5