BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482140
Length=690
Score E
Sequences producing significant alignments: (Bits) Value
AT1G36920.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 486 1e-136
AT1G36922.1 | Symbols: | unknown protein. | chr1:13984576-1398... 335 4e-91
> AT1G36920.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: stem, male gametophyte, flower;
EXPRESSED DURING: M germinated pollen stage, 4 anthesis;
BEST Arabidopsis thaliana protein match is: Nucleic acid-binding,
OB-fold-like protein (TAIR:AT2G05642.1); Has 26 Blast
hits to 23 proteins in 5 species: Archae - 0; Bacteria -
4; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink). | chr1:13983512-13984424
FORWARD LENGTH=573
Length=573
Score = 486 bits (263), Expect = 1e-136
Identities = 278/285 (98%), Gaps = 1/285 (0%)
Strand=Plus/Plus
Query 1 ATGAATGAAGTTAAGAGTATCACTACTGCTGAAGGTCCAACAAAGTTGCTTAATCTTCAG 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAATGAAGTTAAGAGTCTCACTACTGCTGAAGGTCCAACAAAGTTGCTTAATCTTCAG 60
Query 61 CTTAAAGATCTTGGGGATTCACTTATTGATGTTGCCTTATGGGGTAAACTTGCAGAAGAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTAAAGATCTTGGGGATTCACTTATTGATGTTGCCTTATGGGGTAAACTTGCAGAAGAT 120
Query 121 GTCTACTCTAATATTAAATCCCAACCATCAGGTCCTGTTGTTT-TTCTTGGAAGTTTGAT 179
|||||||||||||||||||| |||||||||||||| ||| ||| ||||||||||||||||
Sbjct 121 GTCTACTCTAATATTAAATCTCAACCATCAGGTCCCGTTTTTTCTTCTTGGAAGTTTGAT 180
Query 180 GAAGACTTTGCTATATCAAGGTAAAGGCACAGTTCAAAGCTCAAAATTTACAACAAAAGC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAAGACTTTGCTATATCAAGGTAAAGGCACAGTTCAAAGCTCAAAATTTACAACAAAAGC 240
Query 240 TTATATCAATTCTCCACTACCAGAGATTCTTCAGTTTCAAGAAGC 284
||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 241 TTATATCCATTCTCCACTACCAGAGATTCTTCGGTTTCAAGAAGC 285
> AT1G36922.1 | Symbols: | unknown protein. | chr1:13984576-13985290
FORWARD LENGTH=503
Length=503
Score = 335 bits (181), Expect = 4e-91
Identities = 212/227 (93%), Gaps = 1/227 (0%)
Strand=Plus/Plus
Query 295 CTGCTTGATCTAGACGGTCGTAATTATGTTTTCAAAATCATGGTTAAAGATGAGGCAAAG 354
||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 80 CTGCTTGATCTAGGTGGTCGTAATTATGTTTTCAAGATCATGGTTAAACATGAGGCAAAG 139
Query 355 TATAACCAATCTTCTACATACAAAGTTATAAGTCTTACTGATGTTCCCGATGTTATTCAA 414
||||||||||||||||||||||| | ||||||||||||||||||| | |||||||||||
Sbjct 140 CATAACCAATCTTCTACATACAAAATGATAAGTCTTACTGATGTTCTCAATGTTATTCAA 199
Query 415 AGTTTCTCTGAAAGTGCTTATACTTTGAATGCTATTGAACAAGAAATAATCACTGTCTCT 474
||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 200 AGTTTCTTTGAAAGTGCTTCTACTTTGAATGATATTGAACAAGAAATAATCACTGTCTCT 259
Query 475 GGAAATTCAGTGGGGACTTCAATCGGGACCTCAACTCAGGCTG-AAA 520
|||||||||||||||||||||||||||||| ||||||||| || |||
Sbjct 260 GGAAATTCAGTGGGGACTTCAATCGGGACCACAACTCAGGTTGTAAA 306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33405707755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5