BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482142
Length=928
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32100.1 | Symbols: ATOFP16, OFP16 | ovate family protein 16... 1232 0.0
> AT2G32100.1 | Symbols: ATOFP16, OFP16 | ovate family protein
16 | chr2:13647852-13648785 FORWARD LENGTH=934
Length=934
Score = 1232 bits (667), Expect = 0.0
Identities = 856/944 (91%), Gaps = 26/944 (3%)
Strand=Plus/Plus
Query 1 ATGCCAAAAATCTTGTGGAAAAGCCTCCATCTTTGCTTCCCGTCGAATCTCACCAAATGC 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGCCAAAAATCTTGTGGAAAAGCCTCCATCTTTGCTTCCCGTCAAATCTCACCAAATGC 60
Query 61 TATTCTTCGCCGTGTATTCCCCCGTCCTCCGCCGATCAAGACTTTACCGA-CCAACCTAG 119
|||||||||||||||||||| |||||||||||||||| ||| || | | ||||||||
Sbjct 61 TATTCTTCGCCGTGTATTCCTCCGTCCTCCGCCGATCCCGACGGTATC-ATCCAACCTAA 119
Query 120 CCGTCCCTCTATCGTTCTCCTCAATAACTTCAACCTCCTCTACCACCATGACAA-CA--A 176
||||||||| |||||||| |||||||||||||||||||| |||||| ||||||| || |
Sbjct 120 CCGTCCCTCCATCGTTCTTCTCAATAACTTCAACCTCCTTTACCACAATGACAACCACCA 179
Query 177 CCAACACCACCGTGTCACTGACTTACCTTCCTCCTCTGCCACCACCACTCCGGCAGCCAC 236
||| | ||| ||||||| |||||||||||| ||||| |||| ||||||||||| |||||
Sbjct 180 CCACCCCCATCGTGTCATTGACTTACCTTCTTCCTCCACCACAACCACTCCGGCCGCCAC 239
Query 237 CTCCTCGTCATCCACGTCATCATATGAATCTGATATCTCTCCTGATGTATCCGCGGCTTT 296
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 240 CTCCTCCTCATCCACGTCATCATATGAATCTGATATCTCTCCTGATGTATCCGCCGCTTT 299
Query 297 CGCTTCTCGTCGCTTCTTCTTCTCTTCCCCTGGCCGGTCCAATGCAATCACCGACTCACC 356
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 300 TGCTTCCCGTCGCTTCTTCTTCTCTTCCCCTGGTCGGTCCAATGCAATCACCGACTCACC 359
Query 357 AGAAACCCGGTCAAGAGAATTCTCTGATAACTACGATGATGCCACTATCACGTCGACAAA 416
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 360 AGAACCCCGGTCAAGAGAATTCTCTGATAATTACGATGATGCCACTATCACGTCGACAAA 419
Query 417 GAAAAAGAAGAAGAA---TTATGATACTACCGTG---ACTACTACTACGAGGCTTATAAG 470
||| ||||| ||||| |||||||| | ||||| |||||||||||||||||||||||
Sbjct 420 GAAGAAGAAAAAGAAGGTTTATGATAATTCCGTGACTACTACTACTACGAGGCTTATAAG 479
Query 471 CGGAGGAACCGCCGTGACTCAAAACGTGGACTCACCGGATCCGTTAACGGACTTCCGGCG 530
||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 480 CGGAGGAACCGCCGTAACTCAACACGTGGACTCACCGGATCCGTTAACTGACTTCCGGCG 539
Query 531 ATCAATGCAAGAGATGATTGACGCCGCCATTGACGCCGGAGAACTTAGCCGTGATCCGAA 590
||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 540 ATCCATGCAAGAGATGATTGACGCCGCCATCGACGCCGGAGAACTTAGTCGTGATCCGAA 599
Query 591 CGATGGTTACGATTTCTTGGATGAGCTCCTACTCACTTATCTCTCCTTGAATCCAACCGA 650
||| |||||||||||||||||||| || ||||||||||||||||| || |||||| ||||
Sbjct 600 CGACGGTTACGATTTCTTGGATGAACTGCTACTCACTTATCTCTCTTTAAATCCAGCCGA 659
Query 651 CACACACAAGTTCGTCATCAGGGCTTTCTCCGACATATTGGTCTCACTCTTGTCTGAAGA 710
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 660 CACACACAAGTTCGTCATCAGGGCTTTCTCCGACATATTGGTCTCACTCTTGTCGGAAGA 719
Query 711 ACGCCGAATATGCTGACGTGGCGGCAGCCGCCGGGATAAAAA-----CGCCCGTGTATTG 765
|||||| |||||||||||||| | |||||||||||||||| | |||||| | ||
Sbjct 720 ACGCCGGATATGCTGACGTGGTGATGGCCGCCGGGATAAAAAAAAAACTCCCGTGCAATG 779
Query 766 AATGCAACACGTGACTATTAGTTCAGTGAACCTAACTTTCTCTTTTTCCATTGTAATTTG 825
||||||||||||||||||||||||||||||||||||||||| |||||||| | | |
Sbjct 780 AATGCAACACGTGACTATTAGTTCAGTGAACCTAACTTTCT-TTTTTCCA----A-T--G 831
Query 826 TACGTCTTCATGGAAGAGTAGCTAAGCAACCCa-aaaaaaTTAATACTGACAATTTTATA 884
|||||||||||||||||||| |||||||| ||| ||||||||| |||||||||||| |||
Sbjct 832 TACGTCTTCATGGAAGAGTAACTAAGCAAACCAGAAAAAATTATTACTGACAATTTCATA 891
Query 885 TTTTGTATGttttttttttAATTATTGAATGATGAAAAGGATAG 928
||||||||||||| || ||| ||||||||||| |||||||||
Sbjct 892 TTTTGTATGTTTTATTAA-AATAATTGAATGATGCAAAGGATAG 934
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45361434741
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5