BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482146
Length=453
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32190.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 531 3e-150
AT2G32210.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 335 2e-91
AT2G32200.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 263 1e-69
AT1G05340.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 113 1e-24
> AT2G32190.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G32210.1);
Has 218 Blast hits to 218 proteins in 24 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 16; Plants - 202; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:13674498-13675286
FORWARD LENGTH=500
Length=500
Score = 531 bits (287), Expect = 3e-150
Identities = 390/436 (89%), Gaps = 21/436 (5%)
Strand=Plus/Plus
Query 38 AAAACAAATCATAATCCGTTCGAAGATGAGCCAATTCAGCCAAAACCAATCTTCAGGAGC 97
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 66 AAAACAAATCATAATCTGTTCGAAGATGAGCCAATACAGCCAAAACCAATCTTCAGGAGC 125
Query 98 TTATCCTACGCCGCCAGTGTCTACCGGCCCTTACGTGGCACCACCACCGCTCGGTTACCC 157
||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||
Sbjct 126 TTATCCTACGCCGCCAGTGTCTACCGGCCCTTATATGACACCGCCACCGCTCGGTTACCC 185
Query 158 GACGAATGACACCAGTCATGCCCCGGTGGCTCCGGTGGAGACAAAATCCAAGGGTGATGG 217
||||| |||| |||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 186 GACGAGCGACATCAGTCATGCCACGGTGGCTCCGGTGGAGACAAAGTCCAAGGGTGATGG 245
Query 218 ATTCTTGAAAGGCTGTCTTGCGGCCATGTGTTGCTGTTGTGTCCTCGACGCCTGCTTCTG 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 ATTCTTGAAAGGCTGTCTTGCGGCCATGTGTTGCTGTTGTGTCCTCGACGCCTGCTTCTG 305
Query 278 AATTCGGAGGAATTGGATGGGTTATTTGATATTTCATGCAAattatttatccttttattt 337
|||| | || |||| ||| | ||||||||| |||||||||||||||||||| || |||||
Sbjct 306 AATTTG-AGAAATTCGATTGTTTATTTGATGTTTCATGCAAATTATTTATCATTGTATTT 364
Query 338 tgctttacccaaattatattttgggatttgtattt-att---aa-ttc-a-t-tt-ctt- 387
||||||||||||||||||||||||||||||||| ||| || ||| | | || |||
Sbjct 365 TGCTTTACCCAAATTATATTTTGGGATTTGTATGACATTTGGAACTTCTAATATTTCTTA 424
Query 388 -t--att-aCTG-tt--t-ttt-ttt-GTATTGTGTAATTTTTACCATCTTATTAATAAA 437
| ||| | | || | ||| ||| ||||||||||||||||||| |||||| ||||||
Sbjct 425 ATTCATTTATTTATTACTCTTTCTTTTGTATTGTGTAATTTTTACCTTCTTATAAATAAA 484
Query 438 TCGTTTTTTCTCTTAC 453
||||||||||||||||
Sbjct 485 TCGTTTTTTCTCTTAC 500
Score = 63.9 bits (34), Expect = 1e-09
Identities = 36/37 (97%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 1 TCAATTCATATTAATCTACACCTCTACATACGATTTT 37
||| |||||||||||||||||||||||||||||||||
Sbjct 13 TCACTTCATATTAATCTACACCTCTACATACGATTTT 49
> AT2G32210.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G32190.1);
Has 214 Blast hits to 214 proteins in 21 species: Archae -
0; Bacteria - 0; Metazoa - 1; Fungi - 10; Plants - 203; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:13677986-13678830
FORWARD LENGTH=583
Length=583
Score = 335 bits (181), Expect = 2e-91
Identities = 223/243 (92%), Gaps = 3/243 (1%)
Strand=Plus/Plus
Query 38 AAAACA-AATCATAATCCGTTCGAAGATGAGCCAATTCAGCCAAAACCAATCTTCAGGAG 96
||| || |||| | ||| |||| |||||||| |||| |||||||||||||||||||||||
Sbjct 68 AAATCACAATC-T-ATCTGTTCCAAGATGAGTCAATACAGCCAAAACCAATCTTCAGGAG 125
Query 97 CTTATCCTACGCCGCCAGTGTCTACCGGCCCTTACGTGGCACCACCACCGCTCGGTTACC 156
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 126 CTTATCCTACGCCGCCAGTGTCTACCGGCCCTTACGTGGCACCGCCACCGCTAGGTTACC 185
Query 157 CGACGAATGACACCAGTCATGCCCCGGTGGCTCCGGTGGAGACAAAATCCAAGGGTGATG 216
| ||||| ||||| ||||||||| ||||||| ||||||||||||| |||||||||||||
Sbjct 186 CAACGAACGACACAAGTCATGCCACGGTGGCAACGGTGGAGACAAAGTCCAAGGGTGATG 245
Query 217 GATTCTTGAAAGGCTGTCTTGCGGCCATGTGTTGCTGTTGTGTCCTCGACGCCTGCTTCT 276
||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 246 GATTCTTAAAAGGCTGTCTTGCGGCCATGTGTTGTTGTTGTGTCCTCGACGCATGCTTCT 305
Query 277 GAA 279
|||
Sbjct 306 GAA 308
> AT2G32200.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G32210.1);
Has 131 Blast hits to 131 proteins in 14 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 1; Plants - 130; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:13676488-13677231
FORWARD LENGTH=486
Length=486
Score = 263 bits (142), Expect = 1e-69
Identities = 275/335 (82%), Gaps = 26/335 (8%)
Strand=Plus/Plus
Query 29 TACGATTTT-AAA-ACAAATCATAATCCGTTCGAAGATGAGCCAATTCAGCCAAAACCAA 86
||| ||||| ||| | ||||||||||| ||||||| |||||||||| ||| |||||||||
Sbjct 32 TAC-ATTTTCAAAGAAAAATCATAATCTGTTCGAATATGAGCCAATACAGTCAAAACCAA 90
Query 87 TCTTCAGGAGCTTATCCTACGCCGCCAGTGTCTACCGGCCCTTACGTGGCACCACCACCG 146
| | |||||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 91 TATGCAGGAGCTTATCCTACGCCGCCAGTGTCTACCGGTCCATACGTGGCACCGCCACCG 150
Query 147 CTCGGTTACCCGACGAATGACACCAGTCATGCCCCGGTGGCTCCGGTGGAGACAAAATCC 206
||||||||||| ||||| ||||| | |||||| |||||||||| || |||||||| ||
Sbjct 151 CTCGGTTACCCAACGAACGACACGACTCATGCTACGGTGGCTCCTGTCGAGACAAAGTCT 210
Query 207 AA-GG-G----TG---ATGGATTCTTGAAAGGCTGTCTTGCGGCCATGTGTTGC-TGTTG 256
|| || | || |||||||||||||||||||||||||| |||||| | || |||||
Sbjct 211 AAAGGTGAAGCTGCTGATGGATTCTTGAAAGGCTGTCTTGCGACCATGT-TGGCCTGTTG 269
Query 257 TGTCCTCGACGCCTGC-TT--CTGAATTCGGAGGAATT-G--GATGGGTTATT---T--G 305
||||||||||| ||| || |||| |||||||||| | ||| | ||||| | |
Sbjct 270 CGTCCTCGACGCATGCATTTTCTGAGTTCGGAGGAAGCAGTCGATTGTTTATTAAATTTG 329
Query 306 ATATTTCATGCAAattatttatccttttattttgc 340
| | ||||||||||| |||| || || ||||||||
Sbjct 330 ACACTTCATGCAAAT-ATTTTTCATTGTATTTTGC 363
> AT1G05340.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures;
EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G32210.1);
Has 189 Blast hits to 189 proteins in 27 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 21; Plants - 168; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:1558844-1559903
REVERSE LENGTH=711
Length=711
Score = 113 bits (61), Expect = 1e-24
Identities = 183/239 (77%), Gaps = 20/239 (8%)
Strand=Plus/Plus
Query 49 TAATCCGTTCGAAGATGAGCCAATTCAG-CCAAAACCAATCTTCAGGAGCTTATCCTA-C 106
|||| |||| |||||||||||| | | | || ||||| ||| ||||||| || || | |
Sbjct 245 TAAT-CGTTAGAAGATGAGCCAGTAC-GATCACAACCAGTCTGCAGGAGC-TAACCCACC 301
Query 107 GCCGCCAG-TGTCTACC-GGCCCTTACGTGGCACCACCACCGCTCGGTTACCCGACGAAT 164
||| || | |||||||| | | | || ||||||| ||| | ||||||||||| ||
Sbjct 302 GCCACC-GATGTCTACCTGTACATCAC----CACCACCGCCGATTGGTTACCCGACTAAC 356
Query 165 GACACC-AGTCATGCCCCGGTGGCTC--CG----GTGGAGACAAAATCCAAGGGTGATGG 217
| ||| ||||||| |||| |||| | ||||| || || || |||||||| ||
Sbjct 357 CA-ACCGAGTCATGGTTCGGTAGCTCAGGGTAAAGTGGAAACCAAGTCTAAGGGTGACGG 415
Query 218 ATTCTTGAAAGGCTGTCTTGCGGCCATGTGTTGCTGTTGTGTCCTCGACGCCTGCTTCT 276
|||||| |||||||||||||||||||||||||||||||||| ||| ||| |||||||
Sbjct 416 ATTCTTCAAAGGCTGTCTTGCGGCCATGTGTTGCTGTTGTGCCCTGGACATTTGCTTCT 474
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21564864321
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5