BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482149
Length=921
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32235.1 | Symbols: | unknown protein; Has 38 Blast hits to... 1447 0.0
> AT2G32235.1 | Symbols: | unknown protein; Has 38 Blast hits
to 38 proteins in 14 species: Archae - 0; Bacteria - 4; Metazoa
- 11; Fungi - 11; Plants - 11; Viruses - 0; Other Eukaryotes
- 1 (source: NCBI BLink). | chr2:13682557-13685500 REVERSE
LENGTH=2156
Length=2156
Score = 1447 bits (783), Expect = 0.0
Identities = 887/935 (95%), Gaps = 16/935 (2%)
Strand=Plus/Plus
Query 1 ATGGCGACGCTAAACATGGCGGAAACCCTAGAAACCCTAATCGCTAGCTCCCAAGAAGCT 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 958 ATGGCGACGCTAAACATGGCGGAAACCCTAGAAACCCTAATCGCTAATTCCCAAGAAGTT 1017
Query 61 GATTACTCCTACGATCCCGAAGAAGATGACATTGATCTCTCCCTCCTTCGTCTCAACAGC 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1018 GATTACTCCTACGATCCCGAAGAAGATGACATTGATCTCTCCCTCCTCCGTCTCAACAGC 1077
Query 121 TTCGGAAACTCCTCTGATCGCCGCCGTGCGAATTCCTCTCCTCCGCAATTCAAATCGTAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TTCGGAAACTCCTCTGATCGCCGCCGTGCGAATTCCTCTCCTCCGCAATTCAAATCGTAC 1137
Query 181 GGATCTTTCGGCTCCTCTTCAACCACAGCAACAACCAGCCCCGTGAAACGTCCATCGCCG 240
||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1138 GGATCTTTCGGTTCCTCTTCAACCACCGCAACAACCAGTCCCGTGAAACGTCCATCGCCG 1197
Query 241 GAATCGAAGGAAGGTGACGAGCCGAGACGCAAGAAACTGTTTATTCC-ACGACCTGAGGA 299
||||||||| ||||||||||||||||||||||||| ||||||||||| | ||||||||||
Sbjct 1198 GAATCGAAGCAAGGTGACGAGCCGAGACGCAAGAAGCTGTTTATTCCGA-GACCTGAGGA 1256
Query 300 AGAAGAAGACCC-AAGTCTCATGGGATATTCAAAGATTCCACTTCCTTTGGTTGATTTCA 358
|||||||||||| || |||||||||||||||||||||||| |||||| ||||||| ||||
Sbjct 1257 AGAAGAAGACCCGAA-TCTCATGGGATATTCAAAGATTCCGCTTCCTGTGGTTGAATTCA 1315
Query 359 ATCCGACGCAAATCCGTTCTCCTCTTTACAAGCGATCTTTATCGGATACATTTGCTTCGC 418
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1316 ATCCGACGCAAATCCGTTCTCCTCTTTACAAGCGATCTTTATCCGATACATTTGCTTCGC 1375
Query 419 CCGTTGGATCTACA-T----TC----GGGTCGGGTTATACCAGAAACAGCGTCGGTCAAG 469
|||||||||||||| | || ||||||||||||||| | |||||||||| |||||
Sbjct 1376 CCGTTGGATCTACATTCGGGTCGGGTGGGTCGGGTTATACCCGTAACAGCGTCGCTCAAG 1435
Query 470 AAACATCACCGCCTTCGGGTAATGTCCCTTCTCTCCCACCACGTCCACCAATGTTCCGGA 529
|||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1436 AAACATCACCTCCTTCGGGTAATGTCCCTTCTCTCCCGCCACGTCCACGGATGTTCCGGA 1495
Query 530 GGTCCGTCTCCGATCTTTCGCCGGCACCTTCCTCCAAGTCTCTTCTTGGATCTTCTCGCT 589
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1496 GGTCCGTCTCTGATCTTTCGCCGGCACCGTCCTCCAAGTCTCTTCTTGGATCTTCTCGCT 1555
Query 590 CCAATGCAACTCCTGAAGGTGATCTTGTGACTCCAGAAAGCTCTGATGCCAATAAGATGC 649
||||||||| ||||||||||||||| | || |||||||||||||||||||||||||||||
Sbjct 1556 CCAATGCAATTCCTGAAGGTGATCTCGCGAATCCAGAAAGCTCTGATGCCAATAAGATGC 1615
Query 650 TGTATATTATCAAGGATGGAGTTCGTGAATTGGATCAATGGTGTAACAAGCTTCTTAAGT 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 TGTATATTATCAAGGATGGAGTTCGTGAATTGGATCAATGGTGTAACAAGCTTCTTAAGT 1675
Query 710 ACGGTGAAGCAGTCTCCTCTGGCTCCGTGAAACAAGACGACAGTCCTAAGGCAGAAGATG 769
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1676 ACGGTGAAGCAGTCTCCTCTGGCTCTGTGAAACAAGACGACAGTCCTAAGGCAGTAGATG 1735
Query 770 AGGTAGTACAA---GAGGAGCAACCGAAAGAGTGCAAAGAAGGCGTGAAGGTGAACAGAC 826
||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 1736 AGGTAGTACAACAAGAGGAGCAACCAAAAGAGTGCAAAGAAGGTGTGAAGGTCAACAGAC 1795
Query 827 TCGGTGAGGCCTTTGTGGTTGAGATCAACTGTCCATGTGGAAAAAACTACCAAACTCTCT 886
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1796 TCGGTGAGGCCTTTGTGGTTGAGATCAACTGTCCATGTGGAAGAAACTACCAAACTCTCT 1855
Query 887 TCTCAGGCCGTGACTGCTACTACAAGCTCTTGTAG 921
|||||||||||||||||||||||||||||||||||
Sbjct 1856 TCTCAGGCCGTGACTGCTACTACAAGCTCTTGTAG 1890
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45009795712
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5