BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482154
Length=1526
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32260.1 | Symbols: ATCCT1, CCT1 | phosphorylcholine cytidyl... 2276 0.0
> AT2G32260.1 | Symbols: ATCCT1, CCT1 | phosphorylcholine cytidylyltransferase
| chr2:13697516-13700641 FORWARD LENGTH=1528
Length=1528
Score = 2276 bits (1232), Expect = 0.0
Identities = 1456/1554 (94%), Gaps = 56/1554 (4%)
Strand=Plus/Plus
Query 1 AGAGGATATTCTTCGTCAC--aa--aaaaaaTAAAATAGTAGGAGAAGAGGGAAGCGACT 56
||||||||||||||||||| || |||||| |||| |||||||||||||||||||||||
Sbjct 1 AGAGGATATTCTTCGTCACAAAATTAAAAAAAAAAAGAGTAGGAGAAGAGGGAAGCGACT 60
Query 57 AGCACCTTTTGTAGTTTTCCGTTTATTTTCTCTATAAGGCGGGTGATTTCGGCTCCTTCA 116
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 AGCACCTTTTGTAGTTTTCCGTTTATTTTCTGTATAAGGCGGGTGATTTCGGCTCCTTCA 120
Query 117 TCGGAGAA-TATGAGCAACGTCACCGGCGATCGCAATGAAGACGGCCTTTCCACCGCCGC 175
||||| || |||||||||||| | ||||||||||| ||||||||||||||||||||||||
Sbjct 121 TCGGA-AATTATGAGCAACGTTATCGGCGATCGCACTGAAGACGGCCTTTCCACCGCCGC 179
Query 176 TGCAGG-CTCCGGCTCTACGGCGGTCCAGAGTTCCCCTCCCACTGATCGTCCTGTCCGCG 234
||| || ||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 180 TGC-GGCCTCTGGCTCTACGGCTGTCCAGAGTTCTCCTCCCACTGATCGTCCTGTCCGCG 238
Query 235 TCTACGCCGATGGGATCTACGATCTTTTCCACTTTGGTCACGCTCGATCTCTCGAACAAG 294
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 239 TCTACGCCGATGGGATCTACGATCTTTTCCACTTTGGTCATGCTCGATCTCTCGAACAAG 298
Query 295 CCAAATTAGAGTTTCC--A-AACACTTACCTTCTTGTTGGATGTTGCAACGATGATACTA 351
||||||||| |||||| | ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 299 CCAAATTAGCGTTTCCAAACAACACTTACCTTCTTGTTGGATGTTGCAATGATGAGACTA 358
Query 352 CCCATAAGTACAAGGGAAGGACTGTCATGACTGCAGAAGAGCGATATGAGTCACTTCGAC 411
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 359 CCCATAAGTACAAGGGAAGGACTGTAATGACTGCAGAAGAGCGATATGAATCACTTCGAC 418
Query 412 ATTGCAAGTGGGTGGATGAAGTCATTCCTGATGCACCATGGGTGGTCAACCAAGAGTTTC 471
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 419 ATTGCAAGTGGGTGGATGAAGTCATCCCTGATGCACCATGGGTGGTCAACCAGGAGTTTC 478
Query 472 TTGACAAGCACCATATTGACTATGTAGCCCACGATTCTCTTCCCTATGCTGATTCGAGCG 531
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 479 TTGACAAGCACCAGATTGACTATGTTGCCCACGATTCTCTTCCCTATGCTGATTCAAGCG 538
Query 532 GAGCTGGAAAGGATGTCTATGAATTTGTTAAGAAAGTTGGGAGGTTTAAGGAAACA-ATG 590
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 539 GAGCTGGAAAGGATGTCTATGAATTTGTTAAGAAAGTTGGGAGGTTTAAGGAAACACA-G 597
Query 591 CGAACTGAAGGAATATCGACCTCGGATATAATAATGAGAATAGTGAAAGATTACAACCAG 650
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 598 CGAACTGAAGGAATATCGACCTCGGATATAATAATGAGAATAGTGAAAGATTACAATCAG 657
Query 651 TATGTCATGCGTAACTTGGATAGAGGATACTCGAGGGAAGATCTCGGAGTTAGCTTTGTC 710
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 658 TATGTCATGCGTAACTTGGATAGAGGATACTCAAGGGAAGATCTTGGAGTTAGCTTTGTC 717
Query 711 AAGGAAAAGAGACTTAGAGTTAATATGAGGCTAAAGAAACTCCAGGAGAGGGTCAAAGAA 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AAGGAAAAGAGACTTAGAGTTAATATGAGGCTAAAGAAACTCCAGGAGAGGGTCAAAGAA 777
Query 771 CAACAAGAAAGAGTGGGAGAAAAGATCCAAACTGTAAAAATGCTGCGCAACGAGTGGGTA 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CAACAAGAAAGAGTGGGAGAAAAGATCCAAACTGTAAAAATGCTGCGCAACGAGTGGGTA 837
Query 831 GAGAATGCAGATCGATGGGTTGCTGGATTTCTTGAAATATTTGAAGAAGGTTGCCATAAG 890
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 838 GAGAATGCAGATCGATGGGTCGCTGGATTTCTTGAAATATTTGAAGAAGGTTGCCATAAG 897
Query 891 ATGGGAACTGCAATCGTAGACAGTATCCAAGAAAGGTTAATGAGACAAAAGTCCGG-AGA 949
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 898 ATGGGAACTGCAATCGTAGACAGTATCCAAGAAAGGTTAATGAGACAAAAGTC-GGCAGA 956
Query 950 GAGGCTGGAGAACGGTCAGGATGATGACACAGACGACCAGTTCTATGAAGAATACTTCGA 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 GAGGCTGGAGAACGGTCAGGATGATGACACAGACGACCAGTTCTATGAAGAATACTTCGA 1016
Query 1010 CCATGACATGGGTAGTGACGAGGATGAAGATGAAAAATTCTACGACGAGGAAGAAATAAA 1069
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1017 TCATGACATGGGTAGTGACGATGATGAAGATGAAAAATTCTACGACGAGGAAGAAGTAAA 1076
Query 1070 GGAAGAAGAGAAAGAGCAAAAC-GTTATGACGGATGCTAAAGACAACAAGTAAGAACAAA 1128
||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1077 GGAAGAAGAGACAGAG-AAAACTGTTATGACGGATGCTAAAGACAACAAGTAAGAACAAA 1135
Query 1129 TTCGGCTTGCAG-----TCAG-----CTCTACTTATGGCCACTTCTACTAAACTCCCTTA 1178
|| ||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1136 TTTGGCTTGCAGAAACCTCAGATTAGCTCTACTTATGGCCACTTCTACTAAACTCCCTTA 1195
Query 1179 -GCCTCTCTCACTCTCTCTTGACCAGTGAAATGCATCTACTTAACATATAATATCAATGT 1237
||||| | ||||||||| | | |||| |||||||||||||||||||| ||||||
Sbjct 1196 AGCCTCGC--ACTCTCTCT---C--G--AAATTCATCTACTTAACATATAATACCAATGT 1246
Query 1238 TTAGAagagagagagagtgtg-tgtgatgtgtgtgtgCGCGTGTTGAACAAACGAACGTG 1296
|||||| |||||||| ||||| |||| | ||| |||| | |||||||||||||||||||
Sbjct 1247 TTAGAA-AGAGAGAGTGTGTGATGTGTT-TGTTTGTGTG--TGTTGAACAAACGAACGTG 1302
Query 1297 CGTGGTTGTCTTTGGTGAGTTGGTCTCATCTTTGTTGATTTTTGAATACGCATGTAtttt 1356
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1303 CGTGGTTGTCTTTGGTGAGTTGGTCTCATCTTTGTTGATTTTTGAATGCGCATGTATTTT 1362
Query 1357 tttttCTTCTTTTT-ATGACAGGCAAAGTGTTATGAAGTAACAATGCAATTGTCTAAA-C 1414
||| ||||||||| ||||| ||||||||||||||||||| ||||||||||||||||| |
Sbjct 1363 TTT--CTTCTTTTTCATGACGGGCAAAGTGTTATGAAGTA-CAATGCAATTGTCTAAAAC 1419
Query 1415 AGGATAAGTCAATGATTCGTGTGTGCCATAAAGTAAACATC-CTTGTATTCATTCATCTT 1473
|||||||||||||| |||||||||||||||||||||||||| || || | | ||||||
Sbjct 1420 AGGATAAGTCAATGGTTCGTGTGTGCCATAAAGTAAACATCGCT-GTGT--A--CATCTT 1474
Query 1474 CCATGCTCCAA-CTCAAACTCGTTTTCTTCAAAAAATTGAAATACAAATTGGTC 1526
||||| ||||| ||||| ||||||||||||||| | ||||||||||||||||||
Sbjct 1475 CCATGTTCCAAACTCAA-CTCGTTTTCTTCAAATA-TTGAAATACAAATTGGTC 1526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75300817500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5