BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482157
Length=873
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32280.1 | Symbols: | Protein of unknown function (DUF1218)... 1279 0.0
> AT2G32280.1 | Symbols: | Protein of unknown function (DUF1218)
| chr2:13713036-13714211 FORWARD LENGTH=900
Length=900
Score = 1279 bits (692), Expect = 0.0
Identities = 831/893 (93%), Gaps = 29/893 (3%)
Strand=Plus/Plus
Query 1 AGACTTTTCACTACCCATTCTCATCCCCTCTTCAACTAACATTC-T---C-TCCCTCAGA 55
||||||| |||||||||||||||| | |||||||||||| |||| | | |||||| |
Sbjct 17 AGACTTTCCACTACCCATTCTCATTCTCTCTTCAACTAATATTCTTCCCCGGCCCTCATA 76
Query 56 AAGAAGCTTCT-C----C-TT-TT--C----T-CAAAGTTGTTTGTTCTCAAAGTATCTC 101
||||||||||| | | || || | | |||| |||| | |||| ||||||||||
Sbjct 77 AAGAAGCTTCTCCTGTTCTTTATTCACATTTTCCAAAATTGTATCTTCTTAAAGTATCTC 136
Query 102 CTACAAAACTTAATCCTATAGTTAGTGAAGAGATTTTAAAATGACAAAGATAGGAGGTAT 161
| |||||||| ||||| || | ||| ||||||||| |||||||||||||||||||||||
Sbjct 137 CAACAAAACTAAATCC--TACTAAGTTAAGAGATTTGAAAATGACAAAGATAGGAGGTAT 194
Query 162 TCTTGTTTGTTTAGTCATTGTGGGCTTAGATGTAGCAGCTGCAATCCTCGGAATCCAAGC 221
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 195 TCTTGTTTGTCTAGTCATTGTGGGCTTAGATGTAGCTGCTGCAATCCTCGGAATCCAAGC 254
Query 222 TGAAGTCGCCCAAAACCAGGTGAAGCACATGAGGCTTTGGTTATTTGAGTGCAGAGAGCC 281
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 TGAAGTCGCCCAAAATCAGGTGAAGCACATGAGGCTTTGGTTATTTGAGTGCAGAGAGCC 314
Query 282 GAGCCAGGACGCGTTCAGGCTCGGTCTAGGTGCAGCCGCGATATTGGTAATGGCTCATGT 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 GAGCCAGGACGCGTTCAGGCTCGGTCTAGGTGCAGCCGCGATATTGGTAATGGCTCATGT 374
Query 342 CCTACTAAACTTGGTCGGAGGCTGTCTTTGTATTTGCTCTCAAGACGAGTTTCAAAGATC 401
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 CCTACTTAACTTGGTCGGAGGCTGTCTTTGTATTTGCTCTCAAGACGAGTTTCAAAGATC 434
Query 402 TTCTTCCACTAGACAAATCTCCATGGCTTGTCTCGTCCTCACTTGGATCGTATTCGCCGT 461
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 435 TTCTTCCACTAGACAAATCTCCATGGCTTGTCTTGTCCTCACTTGGATCGTATTCGCTGT 494
Query 462 TGGATTCGGGAGTATAGTGATCGGGACGATGTCGAACAGTAAGTCAAGATCCTCTTGTGG 521
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 495 TGGATTTGGGAGTATAGTGATTGGGACGATGTCGAACAGTAAGTCAAGATCCTCTTGTGG 554
Query 522 ATTCACACATCACCACTTTCTCTCCATTGGAGGGATTTTGTGTTTTCTTCATGCCCTCTT 581
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 ATTCACACATCACCATTTTCTCTCCATTGGAGGGATTTTGTGTTTTCTTCATGCCCTCTT 614
Query 582 CTGTGTTGCTTATTACGTTTCTGCCACTGCGGCCAAAGATGAAGCTAAGTGACAAAGTGT 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 CTGTGTTGCTTATTACGTTTCTGCCACTGCGGCCAAAGATGAAGCTAAGTGACAAAGTGT 674
Query 642 CACGGTTAATGATGGAACAGGTAGGTCCTTGTCCTTGACAATATTTATGTATAATCATAC 701
|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 675 CACGGTTAATGATGGAACAGGTAGGTCCTTGTTCTTGACTATATTTATGTATAATCATA- 733
Query 702 TATAACCTAGTTTCAATTTATTTCTTTTTCTGAATCGTTTCACTTATTTCGAAGTCACTT 761
|| | ||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 734 TA-A-CCTAGTTTCAATTTATTTCTTCTTATGAATCGTTTCACTTATTTCGAAGTCACTT 791
Query 762 TTGTAATTT-GAAAAGCCGTGTCATTTTGAGAAAAACAATGGAAAAGCTTTTATGTCACG 820
||||||||| |||| || |||||||||||| |||| | |||||||||||||||||||||
Sbjct 792 TTGTAATTTTGAAA-GCTGTGTCATTTTGA-AAAAT-A-TGGAAAAGCTTTTATGTCACG 847
Query 821 CTCTGTTGTCGCATGTGGGGTTAAAATGCACTAGTGATAATGACGTTTGGTGG 873
|||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 848 CTCTGTTGTCGCATGTGGGGTTAAAATGCACTAGTGATAATGACATTCGGTGG 900
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42598556656
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5