BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482159
Length=1486
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32295.1 | Symbols: | EXS (ERD1/XPR1/SYG1) family protein |... 1805 0.0
> AT2G32295.1 | Symbols: | EXS (ERD1/XPR1/SYG1) family protein
| chr2:13719298-13722179 FORWARD LENGTH=1714
Length=1714
Score = 1805 bits (977), Expect = 0.0
Identities = 1056/1094 (97%), Gaps = 6/1094 (1%)
Strand=Plus/Plus
Query 394 GTGGTTTTGTATTTCTCAGCTGTGATTATTCTGATAATCCCTTTCGATATCTTCTACATG 453
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 613 GTGGTTTTGTATTTCTCAGCTGTGATTATTCTGATAATCCCTTTCAATATCTTCTACATG 672
Query 454 CCGTCTCGCTACTGTTTGCTTTGGACTTTTTGGCGAATACTCTTCCCGGTGCAGGCAGTG 513
|||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 673 TCGTCTCGCTACTATTTGCTTTGGACTTTTTGGCGAATACTCTTCCCTGTGCATGCAGTG 732
Query 514 ACTTTTTCGGACTTCTTTCTAGCTGATATCCTGACTTCAATGTCAAAGGTTTTATCGGAT 573
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 733 ACTTTTTCAGACTTCTTTCTAGCTGATATCCTGACTTCAATGTCAAAGGTTTTGTCGGAT 792
Query 574 TTAGAACGTTCAGTATGTCGTATGGTCCATCGACAGGTGGCTACTGTTGCATGGTTTGAA 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 TTAGAACGTTCAGTATGTCGTATGGTCCATCGACAGGTGGCTACTGTTGCATGGTTTGAA 852
Query 634 GCCGATTCGGTTTGCGGGAGTCATTCTGCTGCAATTCCCTTGGTTCTTGTTCTACCTTAT 693
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 GCTGATTCGGTTTGCGGGAGTCATTCTGCTGCAATTCCCTTGGTTCTTGTTCTACCTTAT 912
Query 694 CTTTTCCGGCTGTTCCAATGCATTCGTCAGTATAAAGATAGCAAGGACATTGCAAACATC 753
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 913 CTTTTCCGGCTGTTCCAATGCATTCGTCAGTACAAAGATAGCAAGGACATTGCAAACATC 972
Query 754 TACAATGCTGGGAAATATTTAACGGCGGTGCCTGTCATCTTTCTTTCAGCCCTCAAGTAT 813
|||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 973 TACAATGCTGGGAAGTATTTAACAGCGGTGCCTGTCATCTTTCTCTCAGCCCTCAAGTAT 1032
Query 814 TTTATCGATCCAGATACATGGA-TGTACTCCATTCAGCCGGCATGGATCCTCGCTGGTCT 872
| |||||||||||||||||||| | |||||||| |||||||||||||||||| |||||||
Sbjct 1033 TATATCGATCCAGATACATGGACT-TACTCCATACAGCCGGCATGGATCCTCTCTGGTCT 1091
Query 873 AGCTAACACTTTCTTCTCCTTCTTTTGGGATATATTACGCGATTGGGATCTAAGTGTCTT 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 AGCTAACACTTTCTTCTCCTTCTTTTGGGATATATTACGCGATTGGGATCTAAGTGTCTT 1151
Query 933 CACTCGGATTTTCAAATTCAGCAGACCAAATCTTTTCTCCCATCTACTATATGGACGCCG 992
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1152 CACTCGGATTTTCAAATTCACCAGACCAAATCTTTTCTCCCATCTACTATATGGACGCCG 1211
Query 993 TTGGGTATATGTTTGGGTAATCGGAAGCAATCTGGTACTAAGGTGGACATGGACGTATAA 1052
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1212 TTGGGTATATGTTTGGGTAATCGGAAGCAATCTGGTACTAAGGTGGACATGGACATATAA 1271
Query 1053 GTTATCTGCTCATCTCCGTAACAACTACATCACGGTCTTCATCATCACTGCCTTGGAGAT 1112
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1272 GTTATCTGCTCATCTCCGTAACAACTACATAACGGTCTTCATCATCACTGCCTTGGAGAT 1331
Query 1113 TTACAGGCGATTCCAATGGGCGTTTTTCCGTATAGAGAACGTGTGGTACAAAATCAACAA 1172
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1332 TTACAGGCGATTCCAATGGGCGTTTTTCCGTATAGAGAACGTGTGGTATAAAATCAACAA 1391
Query 1173 TCCCAAGCATACTTCTCATCAATCTAATCCTCTTTCACTGCAAAACGATATCGACAGCGA 1232
||||||||||||| ||||||||||||||||||||||||| ||| | ||||||||||| ||
Sbjct 1392 TCCCAAGCATACTGCTCATCAATCTAATCCTCTTTCACTCCAACATGATATCGACAGTGA 1451
Query 1233 ACATGAGAAATTACTCGCTCACAGTCACAGCCCCGGTGTATAAAAATCTCAATGTTCTTG 1292
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1452 ACATGAGAAATTACTCGCGCATAGTCACAGCCCCGGTGTATAAAAATCTCAATGTTCTTG 1511
Query 1293 TTGTTTTGTGCTAAGTTCTGGAAAGTTTTGAATAACAACACATACAAAGTACTCTGTTAC 1352
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1512 TTGTTTTGTGCTAAGTTCTGAAAAGTTTTGAATAACAACACATACAAAGTACTCTGTTAC 1571
Query 1353 TTATACTGTAAATTGTAACTTCCATTACagagagagagagagaCTACACTGGCTCTATAA 1412
||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1572 TTATACTGTAACTTGTAACTTCCATTACAGAGAGAGAGA----CTACACTGGCTCTATAA 1627
Query 1413 TGTACAGGAAGATGTGTAATTGTGTAATTTCTCTTGGATTAATATTATCTTCACCTGTTC 1472
|||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 1628 TGTACATGAAGATGTGTAATTGTGTAATTTCTCTTGTATTAATATTAACTTCACCTGTTC 1687
Query 1473 TTGTAAAAGATAAA 1486
|||||| |||||||
Sbjct 1688 TTGTAAGAGATAAA 1701
Score = 649 bits (351), Expect = 0.0
Identities = 382/397 (96%), Gaps = 1/397 (0%)
Strand=Plus/Plus
Query 1 ATGCCTGTGAATAATCCTCACTTGCGCAAATCTGGAAGTAGACACATCGTCACTAATCTT 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 ATGCCTGTCAATAATCCTCACTTGCGCAAATCTGGAAGTAGACACATCGTCACTAATCTC 183
Query 61 GGAGATAATGACTTGAAGACCGCAAGTATGCTTCTCAGTACATATGCGAAATTGCAAACT 120
|||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 184 GGAGATAATGACTTGAAGACTGCAAGTATGCTTCTGAGTACTTATGCGAAATTGCAAACT 243
Query 121 CCTATATTCCTTCGAAGTCTCAAGGTTGCTCTGTATATTGGTGGTCTTTATGTTTGTGGA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 CCTATATTCCTTCGAAGTCTCAAGGTTGCTCTGTATATTGGTGGTCTTTATGTTTGTGGA 303
Query 181 AAGATTGGATTGGAATCTGTAATGAAAATGGGAGTAGACACAAGAGAACTGTTCTTCTAT 240
||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 304 AAGGTTGGATTGGAATCTGTAATGAAAATGGGCGTAGAGACAAGAGAACTGTTCTTTTAT 363
Query 241 GAGACATTTCTGTATTATAACCCTCTCCTTCTCATTACACTGATGGTCTGGCTCTGGGGT 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 364 GAGACATTTCTGTATTATAACCCTCTCCTTCTCATTACGCTGATGGTCTGGCTCTGGGGT 423
Query 301 GTTAATTTGTGGGTTTTTTCTCGGTCTGGAGTCGATTATGCAGCTATCTTTTATCTAGGA 360
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 424 GTTAATTTGTGGGTTTTTTCTCGGTCTGGAGTAGATTATGCAGCAATCTTTTATCTAGGA 483
Query 361 CCAGATCATCTTAGTCACAAAGAGATATGGAAG-GTG 396
|||||||||||||||||| ||||||||||||| |||
Sbjct 484 TCAGATCATCTTAGTCACAGAGAGATATGGAAGTGTG 520
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73292795700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5