BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482160
Length=909
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32300.1 | Symbols: UCC1 | uclacyanin 1 | chr2:13722427-1372... 1382 0.0
> AT2G32300.1 | Symbols: UCC1 | uclacyanin 1 | chr2:13722427-13723590
FORWARD LENGTH=995
Length=995
Score = 1382 bits (748), Expect = 0.0
Identities = 862/916 (94%), Gaps = 11/916 (1%)
Strand=Plus/Plus
Query 1 GCACAAAACATCATCATCTCTTTATCTATCTTTCA-ATCTCTTGTTGATTTTCCCCCaaa 59
|||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||
Sbjct 1 GCACAAAACATCATCATCTCTTGATCTATCTTTCAGTTCTCTTGTCAATTTTCCCCCAAA 60
Query 60 aagaaaaagaagagaagaagaTTAGAATGGCATCTAGAGACATGCTGATCATAATCTCGG 119
||||||||| | | ||||||| | ||||||||||||||| |||||||||||||||||||
Sbjct 61 AAGAAAAAGGATATAAGAAGA-T--AATGGCATCTAGAGAAATGCTGATCATAATCTCGG 117
Query 120 TAGTAACCACTACACTCGTCGGTTTAGCAGTAGCTACTGACCACACCATTGGTGGTCCTA 179
| | | ||||||||| | |||||| |||||||||||||||| ||||||||||||||||
Sbjct 118 TCCTCGCTACTACACTCATTGGTTTAACAGTAGCTACTGACCATACCATTGGTGGTCCTA 177
Query 180 GTGGTTGGACTGTAGGAGCTAGTCTTCGAACTTGGGCTGCAGGACAAACATTTGCTGTCG 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 178 GTGGTTGGACTGTAGGAGCTAGTCTTCGAACTTGGGCTGCAGGACAAACATTTGCTGTTG 237
Query 240 GAGACAATCTTGTTTTCTCCTACCCTGCTGCATTCCACGACGTCGTTGAAGTCACAAAAC 299
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 238 GAGACAATCTTGTTTTCTCCTACCCTGCTGCGTTCCACGACGTCGTTGAAGTCACAAAAC 297
Query 300 CCGAATTTGATAGCTGTCAAGCGGTTAAACCGCTTATAACGTTTGCTAATGGAAACTCCT 359
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CCGAATTCGATAGCTGTCAAGCGGTTAAACCGCTTATAACGTTTGCTAATGGAAACTCCT 357
Query 360 TGGTTCCTCTTATTACTCCTGGAAAAAGGTACTTCATTTGTGGAATGCCGGGACATTGTA 419
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TGGTTCCTCTTACTACTCCTGGAAAAAGGTACTTCATTTGTGGAATGCCGGGACATTGTA 417
Query 420 TCCAAGGGATGAAACTTGAAGTAAACGTTGTTCCAACTGCAACCACAGCACCAACCGCAC 479
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 418 GCCAAGGGATGAAACTTGAAGTAAACGTTGTTCCAACCGCAACCGTAGCACCAACCGCAC 477
Query 480 CGCTTCCAAACACCGTCCCATCTCTAAACGCGCCTTCGCCTTCTTCTTTTCTACCTATTC 539
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 478 CGCTTCCAAACACCGTCCCATCTCTAAACGCGCCTTCACCTTCTTCTGTTCTACCTATTC 537
Query 540 AGCCTCTTTTACCTCTTAACCCTGTCCCCA-ttctctctccatcttcttctactccactt 598
| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 538 AACCTCTTTTACCTCTTAACCCTGTCCC-AGTTCTCTCTCCATCTTCTTCTACTCCACTT 596
Query 599 ccttcctcctctctgcctctcattccaccactttctccGGCACTATCTCCGGCTACTCCA 658
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 597 CCTTCCTCCTCTCTGCCTCTCATTCCTCCACTTTCTCCGGCACTATCTCCGGCTACTGCA 656
Query 659 GCGGGGACTTCTCTGCCGTTGTTCCCAGGCTCACCAGGTAGCTCTAGCAGCACA---TCC 715
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 657 GCGGGGACTTCTCTGCCGTTATTCCCAGGCTCACCAGGTAGCTCTAGCAGCACAACATCC 716
Query 716 ACCAAAACCGTCGGGACGTTCCCTTCTAGTACTACCGATACAACGGCCGATCTTGCTGGT 775
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 717 ACCAAAACCGTCGGGACCTTCCCTTCTAGTACTACCGGTACAACGGCCGATCTTGCTGGC 776
Query 776 GCAGGTTCTCCTCCGGCTGACTCCTCTTCTGCCGCGAAAACACTTGTTTTGGGATTTGGA 835
|||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 777 GCAGACTCTCCTCCGGCTGACTCCTCCTCTGCCGCGAAAACACTTGTTTTAGGATTTGGA 836
Query 836 TTCATGGTTGCTATGATTCTTCATTTGTTCTAAGTGTT-TCTTTT-AAGTGGAGAGAGAT 893
||||||||||||||||| |||||||||||||||||||| | |||| ||||||||||| ||
Sbjct 837 TTCATGGTTGCTATGATGCTTCATTTGTTCTAAGTGTTCTTTTTTTAAGTGGAGAGAAAT 896
Query 894 TTGTTTGCGGAGGGAA 909
||||||| |||||||
Sbjct 897 TTGTTTGTAGAGGGAA 912
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44406985948
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5