BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg482164

Length=477
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G32360.1 | Symbols:  | Ubiquitin-like superfamily protein | ...   649    0.0  


> AT2G32360.1 | Symbols:  | Ubiquitin-like superfamily protein 
| chr2:13737019-13737546 REVERSE LENGTH=528
Length=528

 Score =  649 bits (351),  Expect = 0.0
 Identities = 440/481 (91%), Gaps = 14/481 (3%)
 Strand=Plus/Plus

Query  1    ATGAAAGTGAGTGTGGAGATAATAACGGGGACGTTTATTGATGCGGACGTGAGTGAAGAT  60
            ||||| ||||||||||||||||||||||| || ||||| ||| |||||||||||||||||
Sbjct  1    ATGAAGGTGAGTGTGGAGATAATAACGGGAACATTTATAGATACGGACGTGAGTGAAGAT  60

Query  61   ACGACGGTCAAAG-AACTGAAGGAGAAGATCGCGGCGGAGGTGAAATTACCGGTGACTCG  119
             |||||||| ||| || |||||||||||||||||| |||||||||||| |||||||| ||
Sbjct  61   GCGACGGTC-AAGCAAATGAAGGAGAAGATCGCGGTGGAGGTGAAATTGCCGGTGACGCG  119

Query  120  TTTGATACTTGTCATCGGAGATGAAGAGACGAGAAGGA-TGGTGATGGAGGATGAAGATG  178
            ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||
Sbjct  120  TTTGATACTTGTCATTGGAGATGAAGAGACGAGAA-GATTGGTGATGGAGGATGAAGATG  178

Query  179  ACATGATGCTGAGAGATTTAGGAGTGGGAGAAGATTCTCATATGTATTTGTTCTTTAAGC  238
            |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  179  ACATGATGTTGAGAGATTTAGGAGTGGGAGAAGATTCTCATATCTATTTGTTCTTTAAGC  238

Query  239  ATCCTGATTTGGTTTCTGAGGAAGAG-GAATCTAAAGGAGGAGAAGAAGATGATGATGAT  297
            ||||||||||||||||| |||||||| || |||||||||| | | ||   ||||||||||
Sbjct  239  ATCCTGATTTGGTTTCTAAGGAAGAGAGA-TCTAAAGGAG-A-A-GA---TGATGATGAT  291

Query  298  CCTATGGAGGAGGTTTCGTCGGAAGCAGAGAGTCCAAGAGGAAACGAAGAAGAAGACGAA  357
            ||||||||||||||||| |||||||||||||||  |||||||||||||||||||| ||||
Sbjct  292  CCTATGGAGGAGGTTTCTTCGGAAGCAGAGAGTGGAAGAGGAAACGAAGAAGAAGTCGAA  351

Query  358  AAGCCAAAAATAGACGGGgaagag-aaggatcaagcgatgaaggatgaagaagaagatag  416
            ||| ||||||||||||| |||||| ||| ||||||||||||| |||||||||||||||||
Sbjct  352  AAGGCAAAAATAGACGGTGAAGAGGAAG-ATCAAGCGATGAAAGATGAAGAAGAAGATAG  410

Query  417  cgatgagaaagttgaagaagatgaagaagcgaagcagaatgagaaggatggtgaagcAAA  476
             |||| |||||| |||||||||||||||| |||| |||| ||||||||||||||||||||
Sbjct  411  AGATGTGAAAGTAGAAGAAGATGAAGAAGAGAAGGAGAAGGAGAAGGATGGTGAAGCAAA  470

Query  477  G  477
            |
Sbjct  471  G  471



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22705834444


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5