BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg482166

Length=661
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G32380.1 | Symbols:  | Transmembrane protein 97, predicted |...   811    0.0  


> AT2G32380.1 | Symbols:  | Transmembrane protein 97, predicted 
| chr2:13746611-13747791 REVERSE LENGTH=749
Length=749

 Score =  811 bits (439),  Expect = 0.0
 Identities = 516/553 (93%), Gaps = 5/553 (1%)
 Strand=Plus/Plus

Query  31   agaacaaaaaaaatccattgaagaa--a-aagaa-aaaaaaaaTGGGAGCATTTTGCAAG  86
            |||| ||| ||||||||||||||||  | ||||| |||||||||||||||||||||||||
Sbjct  21   AGAA-AAACAAAATCCATTGAAGAAGGAGAAGAAGAAAAAAAATGGGAGCATTTTGCAAG  79

Query  87   TTAATCGATGCGGTTCTCTTCTTATACTTCGCTCTAATGGCGGTCATTGCACCGCTCATC  146
            || |||||||||||||||||||||||||| ||||| |||||||| ||||| ||||| |||
Sbjct  80   TTGATCGATGCGGTTCTCTTCTTATACTTTGCTCTCATGGCGGTAATTGCGCCGCTTATC  139

Query  147  GACGGTCAAACAAGTCTCCCCGGCGATATCTTCCCGGCGTTTATCGTCGATCTGAACCGC  206
            ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct  140  GACGGTCAAACGAGTCTTCCCGGCGATATCTTCCCGGCGTTTATCGTCGATCTGAATCGC  199

Query  207  TGGTACATCGATGAATTTGGAGATTATCTAGTCAAGGATAAGCCGCATTTCCTCGTCGGA  266
            |||||||| |||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct  200  TGGTACATTGATGAATTTGGAGATTATCTAGTCAAAGAGAAGCCGCATTTCCTAGTCGGA  259

Query  267  CTCGTCTGGCACGAGCTTCTGCTTCTTTGGCCGCTCTCGATCGTCAACGTCTACGCAATT  326
            ||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct  260  CTCGTCTGGCATGAGCTTTTGCTTCTTTGGCCGCTCTCAATCGTCAACGTCTACGCAATT  319

Query  327  CTCGCCGGGAAATCTTGGTTCAGTACCACTTCCATGGTGTACGGAGCTTCCGTCGTGACT  386
            ||||| |||||||| |||||  ||||||| || |||||||||||||||||||||||||||
Sbjct  320  CTCGCTGGGAAATCGTGGTTTGGTACCACCTCAATGGTGTACGGAGCTTCCGTCGTGACT  379

Query  387  TCTATGGCTGCTATACTGGGAGAGATGATAGGTTCAGGGAAGGCATCTGAGAAATTGTTG  446
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  380  TCTATGGCTGCTATACTGGGAGAGATGATAGGATCAGGGAAGGCATCTGAGAAATTGTTG  439

Query  447  ATAATTTATGTGCCATTCATGGGAATTGGTATTCTAGCTCTTCTTCGCGGTCTTCTCTCT  506
            || || |||||||||||||||||  |||||||||||||||||||||| |||||||| |||
Sbjct  440  ATGATGTATGTGCCATTCATGGGTGTTGGTATTCTAGCTCTTCTTCGTGGTCTTCTTTCT  499

Query  507  CAATCCAACAAAAGCGGTGGAGCTGTTGGTAAGAGACCTGCTATTTTGGCCAGGAGAAAG  566
            |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  500  CAATCCAACAAAAGTGGTGGAGCTGTTGGCAAGAGACCTGCTATTTTGGCCAGGAGAAAG  559

Query  567  CGTGCTTGAGGTA  579
            |||||||||||||
Sbjct  560  CGTGCTTGAGGTA  572



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31948917492


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5