BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482173
Length=1723
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32460.1 | Symbols: MYB101, ATMYB101, ATM1 | myb domain prot... 2484 0.0
AT5G55020.1 | Symbols: ATMYB120, MYB120 | myb domain protein 12... 259 6e-68
AT3G61250.1 | Symbols: AtMYB17, MYB17 | myb domain protein 17 |... 87.9 3e-16
AT5G26660.1 | Symbols: ATMYB86, MYB86 | myb domain protein 86 |... 78.7 2e-13
AT5G61420.2 | Symbols: MYB28, HAG1 | myb domain protein 28 | ch... 67.6 4e-10
AT5G15310.1 | Symbols: ATMYB16, ATMIXTA, MYB16 | myb domain pro... 65.8 1e-09
> AT2G32460.1 | Symbols: MYB101, ATMYB101, ATM1 | myb domain protein
101 | chr2:13782208-13784471 REVERSE LENGTH=1792
Length=1792
Score = 2484 bits (1345), Expect = 0.0
Identities = 1647/1780 (93%), Gaps = 71/1780 (4%)
Strand=Plus/Plus
Query 1 atatatacaaatatatatac-atatacaaacatcgtatatatCAAGTAACAGAGAGAAAA 59
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATATATACAAAAATATATACAATATACAAACATCGTATATATCAAGTAACAGAGAGAAAA 60
Query 60 ATC-TTTTTCTTCCTCTCCTTGATCGGAGGGTCGCCGTGTTG-AAA--A-GGA------T 108
||| |||||||||||||||||||||||||||||||||||||| ||| | ||| |
Sbjct 61 ATCTTTTTTCTTCCTCTCCTTGATCGGAGGGTCGCCGTGTTGAAAAGGATGGATGGTGGT 120
Query 109 ------------G-GATGG-T--GATGGAGGGGAGAGGGTTGAAGAAAGGGCCGTGGACA 152
| || || | |||||||||||||||||||||||||||||||||||||
Sbjct 121 GGAGAGACGACGGCGACGGCTACGATGGAGGGGAGAGGGTTGAAGAAAGGGCCGTGGACA 180
Query 153 ACGACGGAGGATGCGATCTTGACGGAGTACGTGAGGAAACACGGTGAAGGTAATTGGAAC 212
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 ACGACGGAGGATGCGATCTTGACGGAGTACGTGAGAAAACACGGTGAAGGTAATTGGAAC 240
Query 213 GCCGTGCAAAAGAACTCAGGTTTGCTCCGGTGTGGCAAAAGTTGCCGGT-TACGGTGGGC 271
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 241 GCCGTGCAAAAGAACTCAGGTTTGCTCCGGTGTGGCAAAAGTTGCC-GTCTACGGTGGGC 299
Query 272 GAATCATCTCCGGCCAAATCTAAAGAAAGGATCTTTTACTCCTGATGAAGAAAAGATCAT 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GAATCATCTCCGGCCAAATCTAAAGAAAGGATCTTTTACTCCTGATGAAGAAAAGATCAT 359
Query 332 CATCGAGCTTCACGCTAAGCTCGGAAACAAATGGGCTCGTATGGCTTCTCAGTTACCGGG 391
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 360 CATCGACCTTCACGCTAAGCTTGGAAACAAATGGGCTCGTATGGCTTCTCAGTTACCTGG 419
Query 392 AAGAACAGACAACGAGATCAAGAACTATTGGAACACGAGGATGAAGAGAAGACAAAGAGC 451
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AAGAACAGACAATGAGATCAAGAACTATTGGAACACGAGGATGAAGAGAAGACAAAGAGC 479
Query 452 TGGTTTGCCTTTATACCCTCATGAGATTCAACATCAAGGAATTGATAATGATGATGAGTT 511
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 480 TGGTTTGCCTTTATACCCTCATGAGATTCAACATCAAGGGATTGATATTGATGATGAGTT 539
Query 512 TGAGTTTGATTTAACTTCCTTCCAGTTCCAAAACCAAGATCTTGATCATAACCACCAAAA 571
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGAGTTTGATTTAACTTCCTTTCAGTTCCAAAACCAAGATCTTGATCATAACCACCAAAA 599
Query 572 TATGATTCAATACACTAAttcttctaatacttcatcatcttcgtcttcattctcttcttc 631
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 600 TATGATTCAGTACACTAATTCTTCTAATACTTCATCATCCTCGTCTTCATTCTCTTCTTC 659
Query 632 atcttctcaaccttcaAAAAGGCTGCGTCCTGATGATCCTTTAGTCACTACTAATCCCGG 691
|||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 660 ATCTTCTCAACCATCAAAAAGGCTGCGTCC---TGATCCTTTAGTCTCTACTAATCCCGG 716
Query 692 CCTAAACCCGATCCCCGATTCTTCGATGGATTTTCAAATGTTCTCTCTTTACAACAATAG 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 CCTAAACCCGATCCCCGATTCTTCGATGGATTTTCAAATGTTCTCTCTTTACAACAATAG 776
Query 752 CCTTGAGAATGACAATAACCAGTTTGGTTTCTCTGTTCCTTTGTCCTCATCATCCTCGTC 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 CCTTGAGAATGACAATAACCAGTTTGGTTTCTCTGTTCCTTTGTCCTCATCATCCTCGTC 836
Query 812 CAAC-------G--ATCCCAACCACATCCTTGAGTTCATCTCCGAGAATTCGGACACAA- 861
||| | ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 837 TAACGAGGTGTGTAATCCCAACCACATCCTTGAGTACATCTCCGAGAATTCGGACACAAG 896
Query 862 ACAATACAAATAAGAAAGACATTGATGCTATGAGTTATAGTTCATTGCTTATGGGAGATC 921
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 A-AATACCAATAAGAAAGACATTGATGCTATGAGTTATAGTTCATTGCTTATGGGAGATC 955
Query 922 TTGAGATAAGACCGAGTTCTTTCCCTTTAGGACTAGAAAATTCCGTCCTAGAGCTTCCTT 981
||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 956 TTGAGATAAGATCGAGTTCTTTCCCTTTAGGACTAGACAATAGCGTCCTAGAGCTTCCTT 1015
Query 982 CAAACCAAACACCGACCCATTCGTTCAGTTCTAATCCTATTCTCGACAATGGTGTCCATC 1041
||||||||| ||||||||||||||||||||||| ||||||| | ||||||||||||||||
Sbjct 1016 CAAACCAAAGACCGACCCATTCGTTCAGTTCTAGTCCTATTATTGACAATGGTGTCCATC 1075
Query 1042 TTGAGCCACCAGCTGGCAACAGTGGACTACTTGATGCTCTCTTGGAGGAGTCTCAAGCCT 1101
|||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1076 TTGAGCCACCTTCTGGCAATAGTGGACTACTTGATGCCCTCTTGGAGGAGTCTCAAGCCT 1135
Query 1102 TGTCTCGAGGCGGAGTCTTCAAGGACGTTAGGGTTTCCTCGAGTGATCTATGTGAGGTTC 1161
|||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1136 TGTCTCGAGGCGGACTCTTCAAGGACGTTAGGGTTTCCTCCAGTGACCTATGTGAGGTTC 1195
Query 1162 AAGATAAGAGGGTGAAGATGGACTTTGAGAATCGGTTAATAGATCATCTAAACTCTTCTC 1221
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1196 AAGATAAAAGGGTGAAGATGGACTTTGAGAATCTTTTAATAGATCATCTAAACTCTTCTA 1255
Query 1222 ATCATTCATCATTGGGAACAAACCCTAATATTCACAACAAGTACAATGAGCCAACATTAA 1281
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1256 ATCATTCATCATTGGGAGCAAACCCTAATATTCACAACAAGTACAATGAGCCAAC---AA 1312
Query 1282 TGGTGAAAA-CAACGGTGGATGATGATGATGACTTATTGATGAGCCTTCTCAACAACTTC 1340
|||| |||| ||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1313 TGGT-AAAAGTAACGGTGGATGATGATGATGAATTATTGACGAGCCTTCTCAACAACTTC 1371
Query 1341 CCTTCAGCCACAACACCGTTGCCTGATTGGTACCGGGTGACGGAAATCCAAAACGAAGCC 1400
|||||| |||||||||| |||||||||||||| |||||||| ||||| |||||||| |||
Sbjct 1372 CCTTCAACCACAACACCTTTGCCTGATTGGTATCGGGTGACAGAAATGCAAAACGAGGCC 1431
Query 1401 TCATATCTTGCTCCACCGAGCGGATCAATTCTAATGGGAAACCATCAAGGTAACGGGAGG 1460
||||||||||| ||||| || || |||||| ||||||||||||||||||||||| |||
Sbjct 1432 TCATATCTTGCCCCACCAAGTGG---AATTCTTATGGGAAACCATCAAGGTAACGGCAGG 1488
Query 1461 GTGGAACCACCCACGGTGCCACCTTCGTCCAGTGTAGATCCTATGGCCTCGTTGGGGTCA 1520
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1489 GTGGAACCACCCACGGTGCCGCCTTCGTCCAGTGTAGATCCTATGGCCTCGTTGGGGTCA 1548
Query 1521 TGCTATTGGAGCAACATGCCTAGCATCTGTTAGTTTGGAACCT-CCTCATGAGTAAAA-T 1578
||||||||||||||||||||||||||||||||||||||||||| || |||||| |||| |
Sbjct 1549 TGCTATTGGAGCAACATGCCTAGCATCTGTTAGTTTGGAACCTGCC-CATGAGCAAAAAT 1607
Query 1579 CAT-TT-CTTTGATTTGGAAAA--GAGAAAGCTAATTGTGAGCTCAATTTGTCTTTGTTG 1634
||| || |||||||||| |||| |||||||||||||||||||| || |||| ||| ||
Sbjct 1608 CATATTTCTTTGATTTGAAAAAAAGAGAAAGCTAATTGTGAGCTTAACTTGTGTTTAATG 1667
Query 1635 TGTAAAATCTTCTTCAA--------C---TTGGGCTGTGCTATGAACTTTTATGTTAACA 1683
||||||||||||||||| | ||||| ||||||||||||| | |||||||||
Sbjct 1668 TGTAAAATCTTCTTCAAAGTGTTTTCAACTTGGGATGTGCTATGAACTGT-ATGTTAACA 1726
Query 1684 TGTTTTCAAGGAACAAAAGAGAAATTAAAAGAGATGAGGA 1723
|||||||||||||||||||||||||| |||||||||||||
Sbjct 1727 TGTTTTCAAGGAACAAAAGAGAAATTGAAAGAGATGAGGA 1766
> AT5G55020.1 | Symbols: ATMYB120, MYB120 | myb domain protein
120 | chr5:22324599-22326248 REVERSE LENGTH=1572
Length=1572
Score = 259 bits (140), Expect = 6e-68
Identities = 255/308 (83%), Gaps = 18/308 (6%)
Strand=Plus/Plus
Query 132 TTGAAGAAAGGGCCGTGGACAACGACGGAGGATGCGAT-CTTGACGGAGTACGTGAG-GA 189
||||||||||| || ||||| || |||| |||| ||| |||| | | |||||| || ||
Sbjct 76 TTGAAGAAAGGTCCATGGACGGCGGCGGAAGATGAGATACTTG-CTGCGTACGTTAGAGA 134
Query 190 AACACGGTGAAGGTAATTGGAACGCCGTGCA-AAAGAACTCAGGTTT-GCTCCGGTGTGG 247
| |||||||||| |||||||||||||| || ||| ||| ||||||| ||| || || ||
Sbjct 135 GA-ACGGTGAAGGGAATTGGAACGCCGTTCAGAAA-AACACAGGTTTGGCT-CGTTGCGG 191
Query 248 CAAAAGTTGCCGGT-TACGGTGGGCGAATCATCTCCGGCCAAATCT-AAAGAAAGGATCT 305
|||||| |||| || | || ||||| ||||| ||||| |||||||| ||| ||||| |||
Sbjct 192 CAAAAGCTGCC-GTCTTCGATGGGCCAATCACCTCCGACCAAATCTGAAA-AAAGGCTCT 249
Query 306 TTTACTC-CTGATGAAGAAAAG-ATCATCA-TCGAGCTTCACGCTAAGCTCGGAAACAAA 362
|| || | ||| |||| || | |||||| || ||||||| ||| |||| || ||||||
Sbjct 250 TTCAC-CGGTGACGAAG-AACGTCTCATCATTC-AGCTTCATGCTCAGCTTGGTAACAAA 306
Query 363 TGGGCTCGTATGGCTTCTCAGTTACCGGGAAGAACAGACAACGAGATCAAGAACTATTGG 422
|||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 307 TGGGCTCGCATGGCTGCTCAGTTACCGGGAAGAACAGACAACGAGATTAAGAACTATTGG 366
Query 423 AACACGAG 430
||||||||
Sbjct 367 AACACGAG 374
> AT3G61250.1 | Symbols: AtMYB17, MYB17 | myb domain protein 17
| chr3:22671002-22672738 FORWARD LENGTH=1391
Length=1391
Score = 87.9 bits (47), Expect = 3e-16
Identities = 155/205 (76%), Gaps = 16/205 (8%)
Strand=Plus/Plus
Query 231 GGTTTGCTCCGGTGTGGCAAAAGTTGCCGG-TTACGGTGGGCGAATC-ATCTCCGGCCAA 288
||||| || || ||||| || |||||| || | | | ||| | || | |||| | |||
Sbjct 437 GGTTTACTTCGCTGTGGGAAGAGTTGCAGGCTGA-GATGGAC-AAACTATCTGAGACCAG 494
Query 289 ATC-TAAAGAAAGGAT-CTTTTACTCCTGATGAAGA-AAAGATCATCATCGAGCTTCACG 345
| | |||||| ||| | |||| ||| |||||||||| ||| | | ||| ||||||| |
Sbjct 495 A-CATAAAGAGAGG-TCCTTTCACTGCTGATGAAGAGAAA-CTTGTTATCCAGCTTCATG 551
Query 346 CTAAGCTCGGAAACAAATGGGCTCG-TATGGCTTCTCAG-TTACCGGGAAGAACAGACAA 403
| | ||||| |||| |||||| | ||| || | ||| || || ||||||||||||||
Sbjct 552 CCATTCTCGGCAACAGGTGGGCT-GCTATTGCAGCACAGCTT-CCAGGAAGAACAGACAA 609
Query 404 CGAGATCAAGAACT-ATTGGAACAC 427
|||||||||||||| || |||||||
Sbjct 610 CGAGATCAAGAACTTAT-GGAACAC 633
> AT5G26660.1 | Symbols: ATMYB86, MYB86 | myb domain protein 86
| chr5:9331573-9333174 REVERSE LENGTH=1391
Length=1391
Score = 78.7 bits (42), Expect = 2e-13
Identities = 112/145 (77%), Gaps = 8/145 (6%)
Strand=Plus/Plus
Query 285 CCAAATCTAAAGAAAGGATCTTT-TACTCCTGATGAAGAAAAG-ATCATCATCGAGCTTC 342
||| || |||||| |||| |||| | ||| || |||| |||| | ||||| ||||| |
Sbjct 317 CCAGATTTAAAGAGAGGAGCTTTCT-CTCAAGACGAAG-AAAGCTTGATCATTGAGCTCC 374
Query 343 ACGCTAAGC--TCGGAAACAAATGGGCTCGTATGGCTTCTCAGTTACCGGGAAGAACAGA 400
| ||| || | || |||| |||| ||| || || | | ||||||||||||||||||
Sbjct 375 ATGCT--GCATTAGGCAACAGATGGTCTCAAATCGCAACGCGGTTACCGGGAAGAACAGA 432
Query 401 CAACGAGATCAAGAACTATTGGAAC 425
|||||||||||| |||| |||||||
Sbjct 433 CAACGAGATCAAAAACTTTTGGAAC 457
> AT5G61420.2 | Symbols: MYB28, HAG1 | myb domain protein 28 |
chr5:24689151-24690797 REVERSE LENGTH=1427
Length=1427
Score = 67.6 bits (36), Expect = 4e-10
Identities = 42/45 (93%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 384 TTACCGGGAAGAACAGACAACGAGATCAAGAACTATTGGAACACG 428
||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 288 TTACCTAGAAGAACAGACAACGAGATCAAGAACTACTGGAACACG 332
> AT5G15310.1 | Symbols: ATMYB16, ATMIXTA, MYB16 | myb domain protein
16 | chr5:4974671-4976227 FORWARD LENGTH=1325
Length=1325
Score = 65.8 bits (35), Expect = 1e-09
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 393 AGAACAGACAACGAGATCAAGAACTATTGGAACAC 427
|||||||||||||||||||||||||||||||||||
Sbjct 518 AGAACAGACAACGAGATCAAGAACTATTGGAACAC 552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85190324865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5