BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482175
Length=1541
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32480.1 | Symbols: ARASP | ARABIDOPSIS SERIN PROTEASE | chr... 2431 0.0
AT2G32470.1 | Symbols: | F-box associated ubiquitination effec... 617 7e-176
> AT2G32480.1 | Symbols: ARASP | ARABIDOPSIS SERIN PROTEASE | chr2:13788517-13790073
REVERSE LENGTH=1557
Length=1557
Score = 2431 bits (1316), Expect = 0.0
Identities = 1480/1557 (95%), Gaps = 20/1557 (1%)
Strand=Plus/Plus
Query 1 AATCGTACCACTTCACCGTAGTACTCCAAAACCTCCGCTTC-CACGAAACAATGCTATTA 59
||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||
Sbjct 1 AATCGTACCACTTCACCGTAGTACTCCAAAATCTCCACTTCTCACGAAACAATGCTATTA 60
Query 60 AACATTTCTTCTTCTCCAATCTCTCATCGAAACCCTCA----CT-T-C---TTCAACAAC 110
|||||||||||||||||||||||||||||||||||||| || | | |||||||||
Sbjct 61 AACATTTCTTCTTCTCCAATCTCTCATCGAAACCCTCACTTCCTCTCCAATTTCAACAAC 120
Query 111 CCCATCTCTTATTTCCCTCGGCGATCCAAAACCCATCTCTCAAAATCTCATCTTTTCCCC 170
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 121 CCCATCTCTTATTTCCCTCGACGATCCAAAACCCATCTCTCAAAATCTCATTTTTTCCCC 180
Query 171 AAGTTCACTCCTTTATCGAACCAGAGTCTCAAAAACAGAGTCTTGTTCGGAAACAAGAGG 230
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 AAGTTCACTCCTTTATCCAACCAAAGTCTCAAAAACAGAGTCTTGTTCGGAAACAAGAGG 240
Query 231 TGCCCAGATGGAGAAAGGTTTGATTTTAGGGCAAGAGCAATCTCCGGGATTGATTTGGGA 290
| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 241 TACCCAGATGGAGAAAGGTTTGATTTTAGATCAAGAGCTATCTCCGGGATTGATTTGGGA 300
Query 291 AGCTTTGAATCTGTTCTTGAAGCTATTGCTGTTCTCACTACGATCATCGTTGTTCACGAA 350
|||||||||||||||||||||||||||||||||||||| ||||||||||| || || |||
Sbjct 301 AGCTTTGAATCTGTTCTTGAAGCTATTGCTGTTCTCACAACGATCATCGTCGTCCATGAA 360
Query 351 TCAGGTCATTTCCTAGCGGCTTCTCTTCAAGGGATCCATGTGAGTAAATTCGCAATTGGG 410
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 TCAGGTCATTTCCTTGCGGCTTCTCTCCAAGGGATCCATGTGAGTAAATTCGCAATTGGG 420
Query 411 TTTGGTCCGATTCTAGCTAAGTTCGATTACAACAATGTTGAGTATTCGCTTAGGGCTTTT 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTTGGTCCGATTCTAGCTAAGTTCGATTACAACAATGTTGAGTATTCGCTTAGGGCTTTT 480
Query 471 CCTTTAGGTGGGTTTGTTGGTTTCCCTGATAATGATCCTGACAGTGAGATTCCTATTGAT 530
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 481 CCTTTAGGTGGGTTTGTTGGTTTCCCTGATAATGATCCAGATAGTGAGATTCCTATTGAC 540
Query 531 GATGAGAATCTGCTTAAGAACAGACCAACTTTAGACAGATCGATTGTTGTTTCAGCTGGA 590
||||||||||| |||||||||||||||||| |||| ||||| ||||||||||||||||||
Sbjct 541 GATGAGAATCTTCTTAAGAACAGACCAACTCTAGATAGATCAATTGTTGTTTCAGCTGGA 600
Query 591 ATTATCGCCAATGTGATCTTTGCTTACGCTATAATCTTTGTTCAAGTGCTATCTGTTGGT 650
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 601 ATTATCGCCAATGTGATCTTTGCTTATGCTATAATCTTTGTTCAAGTGTTATCTGTTGGT 660
Query 651 TTGCCTGTACAAGAAGCGTTTCCTGGTGTTCTTGTTCCTGAAGTTAAGACCTTTTCTGCT 710
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTACCTGTACAAGAAGCGTTTCCTGGTGTTCTTGTTCCTGAAGTTAAGACCTTTTCTGCT 720
Query 711 GCTTCTCGTGATGGATTGCTTTCGGGTGATGTAA-TCATCGCTGTGGACGGTGCTCAGCT 769
|||||||||||||| |||||||| |||||||||| || |||||||||||||| || ||||
Sbjct 721 GCTTCTCGTGATGGGTTGCTTTCTGGTGATGTAATTC-TCGCTGTGGACGGTACTGAGCT 779
Query 770 GTCTAAAACCGGGCCTGACGCTGTTTCCAAGATTGTTGACATTGTCAAAAGAAACCCGAA 829
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 780 GTCTAAAACCGGGCCTGACGCTGTTTCGAAGATTGTTGACATTGTTAAAAGAAACCCGAA 839
Query 830 GAGTGATGTGTTGTTTAAG-GTCGAGAGAGGGAATAAAGATTTCGATATTCGGGTAACAC 888
|||| ||||| ||||| || |||| |||||| | ||||||||||||||||||| ||||
Sbjct 840 GAGTAATGTGGTGTTT-AGAATCGAAAGAGGGGGTGAAGATTTCGATATTCGGGTTACAC 898
Query 889 CGGATAAGAACTTTGATGGGACGGGGAAGATTGGTGTTCAGTTGTCTCCAAATGTTAGAA 948
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 899 CGGATAAGAACTTTGATGGGACGGGGAAGATCGGTGTTCAGTTGTCTCCAAATGTTAGAA 958
Query 949 TCACTAAGGTGAGACCGAGGAACATTCCGGAAACGTTTAGATTCGTGGGAAGGGAGTTTA 1008
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 959 TCACTAAGGTGAGACCGAGGAACATTCCGGAAACGTTTAGATTTGTGGGAAGGGAGTTTA 1018
Query 1009 TGGGGCTATCGTCTAATGTTTTGGATGGTCTAAAACAAACGTTCTTCAACTTTTCTCAAA 1068
|||||||||| |||||||||||||| ||| |||||||||| ||||| ||||| ||||| |
Sbjct 1019 TGGGGCTATCTTCTAATGTTTTGGACGGTTTAAAACAAACATTCTTTAACTTCTCTCAGA 1078
Query 1069 CTGCAAGTAAAGTAGCAGGTCCTGTGGCAATTATTGCAGTGGGAGCAGAAGTGGCAAGAT 1128
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 CAGCAAGTAAAGTAGCAGGTCCTGTGGCAATTATTGCAGTGGGAGCAGAAGTGGCAAGAT 1138
Query 1129 CAAATATCGACGGGCTTTACCAATTCGCAGCGTTGCTGAATATCAACCTTGCGGTGATCA 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CAAATATCGACGGGCTTTACCAATTCGCAGCGTTGCTGAATATCAACCTTGCGGTGATCA 1198
Query 1189 ATCTCTTGCCATTACCGGCTCTTGACGGTGGAACTTTGGCATTGATATTGTTGGAAGCTG 1248
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1199 ATCTCTTGCCGTTACCGGCTCTTGACGGTGGAACATTGGCATTGATATTGTTGGAAGCTG 1258
Query 1249 TTAGAGGAGGGAAGAAGCTTCCTGTAGAGGTAGAACAAGGGATAATGTCTTCAGGGATCA 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TTAGAGGAGGGAAGAAGCTTCCTGTAGAGGTAGAACAAGGGATAATGTCTTCAGGGATCA 1318
Query 1309 TGCTTGTGATATTCCTTGGATTGTTTCTCATCGTTAAGGACACACTTAGCCTTGATTTTA 1368
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1319 TGCTTGTGATATTCCTTGGATTGTTTCTCATCGTTAAGGACACACTTAGCCTTGATTTCA 1378
Query 1369 TCAAAGAAATGTTGTAGTTATCTCTTTGAGGAGGAAGAGAGAAACTTTAGTGTGAAGAGG 1428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 TCAAAGAAATGTTGTAGTTATCTCTTTGAGGAGGAAGAGAGAAACTTTAGTGTGAAGAGG 1438
Query 1429 TTGAGAGTTTAGATCAAATTTGGTTATCCAACACAAACACATGGTGATGAATTTATGGTA 1488
||||||||||||| ||||||||| ||||||||||||| | |||||||||||||||||||
Sbjct 1439 TTGAGAGTTTAGAACAAATTTGGCTATCCAACACAAAGA--TGGTGATGAATTTATGGTA 1496
Query 1489 CATA--T-T-CATGTAATAGTTCTACTCTTGTTATCCATTATAAAAGATGTGTTTGT 1541
|||| | | ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1497 CATACATATTCATGTAATAGTTCTACTCTTGTTATCCCTTATAAAAGATGTGTTTGT 1553
> AT2G32470.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr2:13787172-13788894 FORWARD LENGTH=1723
Length=1723
Score = 617 bits (334), Expect = 7e-176
Identities = 363/376 (97%), Gaps = 6/376 (2%)
Strand=Plus/Minus
Query 1170 ATCAACCTTGCGGTGATCAATCTCTTGCCATTACCGGCTCTTGACGGTGGAACTTTGGCA 1229
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1723 ATCAACCTTGCGGTGATCAATCTCTTGCCGTTACCGGCTCTTGACGGTGGAACATTGGCA 1664
Query 1230 TTGATATTGTTGGAAGCTGTTAGAGGAGGGAAGAAGCTTCCTGTAGAGGTAGAACAAGGG 1289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1663 TTGATATTGTTGGAAGCTGTTAGAGGAGGGAAGAAGCTTCCTGTAGAGGTAGAACAAGGG 1604
Query 1290 ATAATGTCTTCAGGGATCATGCTTGTGATATTCCTTGGATTGTTTCTCATCGTTAAGGAC 1349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1603 ATAATGTCTTCAGGGATCATGCTTGTGATATTCCTTGGATTGTTTCTCATCGTTAAGGAC 1544
Query 1350 ACACTTAGCCTTGATTTTATCAAAGAAATGTTGTAGTTATCTCTTTGAGGAGGAAGAGAG 1409
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1543 ACACTTAGCCTTGATTTCATCAAAGAAATGTTGTAGTTATCTCTTTGAGGAGGAAGAGAG 1484
Query 1410 AAACTTTAGTGTGAAGAGGTTGAGAGTTTAGATCAAATTTGGTTATCCAACACAAACACA 1469
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
Sbjct 1483 AAACTTTAGTGTGAAGAGGTTGAGAGTTTAGAACAAATTTGGCTATCCAACACAAAGA-- 1426
Query 1470 TGGTGATGAATTTATGGTACATA--T-T-CATGTAATAGTTCTACTCTTGTTATCCATTA 1525
||||||||||||||||||||||| | | ||||||||||||||||||||||||||| |||
Sbjct 1425 TGGTGATGAATTTATGGTACATACATATTCATGTAATAGTTCTACTCTTGTTATCCCTTA 1366
Query 1526 TAAAAGATGTGTTTGT 1541
||||||||||||||||
Sbjct 1365 TAAAAGATGTGTTTGT 1350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76053825675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5