BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482182
Length=1357
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32560.1 | Symbols: | F-box family protein | chr2:13824794-... 2102 0.0
AT2G26850.1 | Symbols: | F-box family protein | chr2:11449269-... 1166 0.0
> AT2G32560.1 | Symbols: | F-box family protein | chr2:13824794-13826986
FORWARD LENGTH=1367
Length=1367
Score = 2102 bits (1138), Expect = 0.0
Identities = 1290/1363 (95%), Gaps = 11/1363 (1%)
Strand=Plus/Plus
Query 1 AAAGGCAACACAATAATACTGTCTAAATGcttctctactttctcatcacttgtctctctt 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAGGCAGCACAATAATACTGTCTAAATGCTTCTCTACTTTCTCATCACTTGTCTCTCTT 60
Query 61 tctttttctttaccaaatctctatctcttcCTCCATGGGCATCTGAAACCAAAACCTTGC 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTTTTTCTTTACCAAATCTCTTTCTCTTCCTCCATGGGCATCTGAAACCAAAACCTTGC 120
Query 121 TCTCCTTCTACTTCATCAAGAATCCCTTCATGAATACCCTACATCAGACCACACACGATC 180
|||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||
Sbjct 121 TCTCCTTCTACTTCATCAAGAATCCCTTTATGAACACCCTACATCAGACCAAACACGATC 180
Query 181 CAGCCTCTCCGGTGATCGACCAAATGTCGGTTCTTGACCTCCCTGAGCTGGCTCTTGACT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAGCCTCTCCGGTGATCGACCAAATGTCGGTTCTTGACCTCCCTGAGCTGGCTCTTGACT 240
Query 241 GCATTCTCGACCTTCTTCCACCCTCTGGACTCTGCAGCATGGCTAGGGTTTGTAGCTCCT 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCATTCTTGACCTTCTTCCACCCTCTGGACTCTGCAGCATGGCTAGGGTTTGTAGCTCCT 300
Query 301 TGAGGGAGAGATGTGTGAGTGATCATCTATGGGAGAAACATTTGAAGACCAAATGGGGCA 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGAGGGAGAGATGTGTTAGTGATCATCTATGGGAGAAACATTTGAAGACCAAATGGGGCA 360
Query 361 AAATTCTTGGCCCTGCTGCTCACAGAGAGTGGCAATGCTTTATCTC-T-T-CCACATATC 417
|||| |||||||||||||||||||||||||||||||||| |||||| | | |||||||||
Sbjct 361 AAATCCTTGGCCCTGCTGCTCACAGAGAGTGGCAATGCTATATCTCCTCTTCCACATATC 420
Query 418 ATCTTGATTCTCCTCATCAACAAACTGGGAATCTTGGTTTTGCCAAAATCGTTTCTCTGA 477
||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||
Sbjct 421 ATCTTGATTCTCCTCATCATCAAACTGGGAATCTTGGTTTTGCCAAAATCATCTCTCTGA 480
Query 478 TCCGATCGCTTTCATCCGTTTTTCGAGATGATAAACAAAGGAGGGTATATTCATCTTCTC 537
||||||| |||||||||||||| ||||| |||||||||||||||| |||| |||||||||
Sbjct 481 TCCGATCTCTTTCATCCGTTTTCCGAGAGGATAAACAAAGGAGGGGATATGCATCTTCTC 540
Query 538 TGCCACTTGATTCCAGCATGAGCTGCTACCTCTCCCTTGAAACAGGTCGTTTTTGGTTCC 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TGCCACTTGATTCCAGCATGAGCTGCTACCTCTCCCTTGAAACAGGTCGTTTTTGGTTCC 600
Query 598 CTGCTCAAGTCTACAACCGTGAGAATGGGCATGTAGGGTTCATGTTGTCATGCTATGATG 657
| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 601 CAGCTCAAGTTTACAACCGTGAGAATGGACATGTAGGGTTCATGTTGTCATGCTATGATG 660
Query 658 CCGAGCTCAGCTATGATACTCACACTGATACTTTCCTAGCCAGGTATCCACCACATGGTA 717
| ||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||
Sbjct 661 CGGAGCTCAGCTATGATACTCACACGGATACGTTCCAAGCCAGGTATCCACCACATGGTA 720
Query 718 GACGAGCAGCTGCGGTTGAAAAGGGTGTGACATGGGATAGAATAAGAGAAGCTCCCATTG 777
|||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 721 GACGAGCATCTGCGATTGAAAAGGGTGTGACATGGGATAGAATAAGAGCAGCTCCCATTG 780
Query 778 ATGCATCGCCTCATCATCTCTATGTGTCAGATTCTTTAAAAGAATTAAAACCTGGAGATC 837
||||||| ||||||| |||| |||| ||||||||||||||||| || |||||||||||||
Sbjct 781 ATGCATCACCTCATCTTCTCCATGTATCAGATTCTTTAAAAGAGTTGAAACCTGGAGATC 840
Query 838 ACATCGAGATCCAGTGGAGAAGGAACAAAGAGTTCCCATATGGATGGTGGTATGGTGTTG 897
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 841 ACATCGAAATCCAGTGGAGAAGGAACAAAGAGTTCCCATATGGATGGTGGTATGGTCTTG 900
Query 898 TTGGCCATTTGGAATCCTGTGATGGAGATC-TCAACCATTGCCATTGCCAACTTAGCGAG 956
|| |||| |||||||||||||||||||||| | ||||||||||||||||| ||||| |||
Sbjct 901 TTCGCCACTTGGAATCCTGTGATGGAGATCAT-AACCATTGCCATTGCCATCTTAGTGAG 959
Query 957 ACGGTAGTGTTGAAATTCAACCAGTACACAGTCGGATCGAGGTGGAGAAGAACGATGGTG 1016
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 960 ACGGTAGTGTTGGAATTCAACCAGTACACAGTCGGATCAAGGTGGAGAAGAACGATGATC 1019
Query 1017 AGGAGAGATCATAAAGAGGAAGGTAATGAAGAAGACGGGTTCTATGGAGGAATCCGAAAG 1076
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1020 ATGAGAGATCATAAAGAGGAAGGTAACGAAGAAGACGGGTTCTATGGAGGAATCCGAAAG 1079
Query 1077 CTAAATTGTAAAGAAGAGATTGCAATGTGGAAGCGTCACTGGCCTTGCTCCATCTTGGAA 1136
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1080 CTAAATTGTAAAGAAGAGATTGCAATGTGGAAACGTCACTGGCCTTGCTCCATCTTGGAA 1139
Query 1137 TAGCATGAA-GAAGCTTTGCTTAAACACTTGGGGAAATATGTTACACATCACTGTACAGA 1195
|||||| || |||||||||||||||||| |||||||| || |||||||||||| ||| ||
Sbjct 1140 TAGCATTAAAGAAGCTTTGCTTAAACACATGGGGAAAGATATTACACATCACTATACTGA 1199
Query 1196 GAGTAGGATGTTGAATATAGACGTCTATTCTCTTTTATCCAAAGTATGGTTGATCGTGAA 1255
||||||| |||| ||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1200 GAGTAGGTTGTTAAATTTAGACGTCTATTCTCTTTTATCCAATGTATGGTTGATCGTGAA 1259
Query 1256 TTATTTGTTTGGAATATAGTCAAAATACGTGAAACTATTGTGTCACTTGGATTTGAGAAA 1315
||||||||| |||||| |||| | ||||||||| ||||||||||||| |||||||||||
Sbjct 1260 TTATTTGTTGGGAATAAAGTCTA--TACGTGAAATTATTGTGTCACTTCGATTTGAGAAA 1317
Query 1316 TATTGTGGTGTATAGG-AAAA-TATAATACAATTGATTTGAAT 1356
||||||| |||||||| |||| | |||||||||||||||||||
Sbjct 1318 TATTGTGTTGTATAGGGAAAACT-TAATACAATTGATTTGAAT 1359
> AT2G26850.1 | Symbols: | F-box family protein | chr2:11449269-11451239
REVERSE LENGTH=1566
Length=1566
Score = 1166 bits (631), Expect = 0.0
Identities = 982/1152 (85%), Gaps = 22/1152 (2%)
Strand=Plus/Plus
Query 6 CAACAC-AATAATA-CTGTCTAAATGcttctctactttctcatcacttgtctctctttct 63
|||||| |||| || || ||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 329 CAACACAAATAGTACCT-TCTAAATGCTTCTATACTTGCTCATCACTTGTCTCTCTTTCT 387
Query 64 ttttctttaccaaatctctat-ctcttcCTCCATGGGCATCTGAAACCAAAACCTTGCTC 122
| |||||| |||||||| ||| || |||||| |||||||||| ||||||||| ||||||
Sbjct 388 TCTTCTTTTCCAAATCTTTATCCT-TTCCTCAATGGGCATCTAAAACCAAAAATTTGCTC 446
Query 123 TCCTTCTACTTCAT-CAAGAATCCCTTCATGAATACCCTACATCAGACCACACACGATCC 181
|||||||||||| | |||| || || | || | ||||| |||| ||||| |||||
Sbjct 447 TCCTTCTACTTC-TCCAAGTATTTGTTTACAAACAGTCTACACCAGATCACACCCGATCT 505
Query 182 AGCCTCTCCGGTGATC-GACCAAATGTCGGTTCTTGACCTCCCTGAGCTGGCTCTTGACT 240
||||||||||||| || || ||||||| |||||||||||||||| || | || ||||
Sbjct 506 AGCCTCTCCGGTGCTCGGA-AAAATGTCAATTCTTGACCTCCCTGACCTTCCACTCGACT 564
Query 241 GCATTCTCGACCTTCTTCCACCCTCTGGACTCTGCAGCATGGCTAGGGTTTGTAGCTCCT 300
||||||| || |||||||||||||||| ||| || | |||||||||||| |||||||| |
Sbjct 565 GCATTCTTGAACTTCTTCCACCCTCTGAACTATGTACCATGGCTAGGGTCTGTAGCTCGT 624
Query 301 TGAGGGAGAGATGTGTGAGTGATCATCTATGGGAGAAACATTTGAAGACCAAATGGGGCA 360
| || ||||||||||| ||||||||| ||||||||||||| |||||||| |||||||| |
Sbjct 625 TAAGAGAGAGATGTGTAAGTGATCATTTATGGGAGAAACACTTGAAGACTAAATGGGGAA 684
Query 361 AAATTCTTGGCCCTGCTGCTCACAGAGAGTGGCAATGCTTTATCTCTTC-CACATATCAT 419
|||| ||||| ||| ||||||||| ||| |||||||||| | | ||||| | ||||||||
Sbjct 685 AAATCCTTGGACCTTCTGCTCACAAAGAATGGCAATGCTATCTATCTTCTC-CATATCAT 743
Query 420 CTTGATTCTCCTCATCAAC-AAACTGGGAATCTTGGTTTTGCCAAAATCGTTTCTCTGAT 478
|| ||||||||||||| || ||||| | |||||||||| ||||||||| | ||||| ||
Sbjct 744 CTCGATTCTCCTCATC-ACAAAACTAGTCATCTTGGTTTGGCCAAAATCATATCTCTTAT 802
Query 479 CCGATCGCTTTCATCCGTTTTTCGAGATGATAAACAAAGGAGG-GTATATTCATCTTCTC 537
||||||||||||||| |||||||||||||| | || |||||| | |||| |||||||
Sbjct 803 GCGATCGCTTTCATCCATTTTTCGAGATGATGATCATAGGAGGAG-ATATCCATCTTCAA 861
Query 538 TGCCACTTGATTCCAGCATGAGCTGCTACCTCTCCCTTGAAACAGGTCGTTTTTGGTTCC 597
| || ||||| || | ||||| || |||||| ||||| ||||||||||| |||||||| |
Sbjct 862 TCCCTCTTGACTCTACCATGAACTTCTACCTATCCCTCGAAACAGGTCGCTTTTGGTTTC 921
Query 598 CTGCTCAAGTCTACAACCGTGAGAATGGGCATGTAGGGTTCATGTTGTCATGCTATGATG 657
| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 922 CAGCTCAAGTTTACAACCGTGAGAATGGACATGTAGGGTTCATGTTGTCATGCTATGATG 981
Query 658 CCGAGCTCAGCTATGATACTCACACTGATACTTTCCTAGCCAGGTATCCACCACATGGTA 717
| |||||||||||||| ||| ||||| ||||||| | ||| |||||||||||||||||||
Sbjct 982 CTGAGCTCAGCTATGACACTGACACTAATACTTTTCAAGCTAGGTATCCACCACATGGTA 1041
Query 718 GACGAGCAGCTGCGGTTGAAAAGGGTGTGACATGGGATAGAATAAGAGAAGCTCCCATTG 777
| ||||| |||||||||||| | ||||||||||| || ||||||| ||||||| |||
Sbjct 1042 AAAGAGCAATTGCGGTTGAAAAAGACGTGACATGGGAGAGGATAAGAGCAGCTCCCGTTG 1101
Query 778 ATGCATCGCCTCATCATCTCTATGTGTCAGATTCTTTAAAAGAATTAAAACCTGGAGATC 837
||||||| || ||| |||||||||||||||||||| |||| || |||||||| ||||| |
Sbjct 1102 ATGCATCACCCCATAATCTCTATGTGTCAGATTCTCTAAATGAGTTAAAACCCGGAGACC 1161
Query 838 ACATCGAGATCCAGTGGAGAAGGAACAAAGAGTTCCCATATGGATGGTGGTATGGTGTTG 897
|||| ||||||||||||||||||||||||||||| || ||||||||||||||| ||||||
Sbjct 1162 ACATAGAGATCCAGTGGAGAAGGAACAAAGAGTTTCCTTATGGATGGTGGTATAGTGTTG 1221
Query 898 TTGGCCATTTGGAATCCTGTGATGG-AGATCTCAACCATTGCCATTGCCA-ACTTAGCGA 955
|||| || ||||||| |||||||| | |||| |||||||| || ||||| | | |||||
Sbjct 1222 TTGGACACATGGAATCTTGTGATGGCA-ATCTAAACCATTGTCAATGCCATAAT-AGCGA 1279
Query 956 GACGGTAGTGTTGAAATTCAACCAGTACACAGTCGGATCGAGGTGGAGAAGAACGATGGT 1015
|| | | |||||| |||| |||||||||||||||||||| |||||||||| ||||||| |
Sbjct 1280 GATGATGGTGTTGGAATTTAACCAGTACACAGTCGGATCAAGGTGGAGAAAAACGATGAT 1339
Query 1016 GA---GGAGAGATCATAAAGAGGAAGGTAATGAAGAAGACGGGTTCTATGGAGGAATCCG 1072
| |||||||||||| |||| ||||||| || ||||||||||||||||||||||| ||
Sbjct 1340 TAACAGGAGAGATCATAGAGAGAAAGGTAACGAGGAAGACGGGTTCTATGGAGGAATTCG 1399
Query 1073 AAAGCTAAATTGTAAAGAAGAGATTGCAATGTGGAAGCGTCACTGGCCTTGCTCCATCTT 1132
||| |||||||||||||||| |||| |||||||||||||| ||||| | |||||||||
Sbjct 1400 AAAAATAAATTGTAAAGAAGATATTGAAATGTGGAAGCGTCTTTGGCCATCCTCCATCTT 1459
Query 1133 GGAATAGCATGA 1144
||| ||| ||||
Sbjct 1460 GGAGTAGGATGA 1471
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66816925395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5