BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482183
Length=787
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32580.1 | Symbols: | Protein of unknown function (DUF1068)... 1168 0.0
> AT2G32580.1 | Symbols: | Protein of unknown function (DUF1068)
| chr2:13827663-13829317 FORWARD LENGTH=920
Length=920
Score = 1168 bits (632), Expect = 0.0
Identities = 745/797 (93%), Gaps = 17/797 (2%)
Strand=Plus/Plus
Query 1 TTCAGTTGAATCACCACCGACACCATTATTTTGAGTGCAAGAGT-C--A------ATCAG 51
|||||||||||| |||||||||||| || | ||||||||||||| | | |||||
Sbjct 48 TTCAGTTGAATCTCCACCGACACCA-TAATCTGAGTGCAAGAGTCCATACTCTCCATCAG 106
Query 52 AGAGACTCAAATCCAATTCTCATTACTGCAACAGCTCAAATTTGGAATCTTTTCTAAAAA 111
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 107 AGAGACTCAAATCCAATTCTCCTTACTGCAACAGCTCAAATTTGGAATCTTTTGTAAAAA 166
Query 112 CCCAGATCACCGGATCTCGAATGGCGAAGCACACGGCGGCGTTGAAGGTGGGACTGGCTT 171
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 167 CCCAGATCAGCGGATCTCGAATGGCGAAGCACACGGCAGCGTTGAAGGTGGGACTAGCTT 226
Query 172 TGCTGGCGCTGAGCATGATTGGTTACATACTTGGTCCGCCGCTCTACTGGCACCTCACGG 231
| ||||| || ||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 227 TACTGGCCCTCAGCATGATTGGCTACATACTTGGTCCACCGCTCTACTGGCACCTCACGG 286
Query 232 AGGCCTTAGCTGTTTCAGCTACTTCTTGCTCTGCTTGCGTCTGTGATTGCTCTTCGTCGC 291
| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 287 AAGCCTTAGCCGTTTCAGCCACTTCTTGCTCTGCTTGCGTCTGTGATTGCTCTTCGTTGC 346
Query 292 CTCTTCTCACCATCCCAACTGGACTCAGCAATGTTTCATTCGCTGATTGTGCAAAGCGTG 351
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 347 CTCTTCTCACCATCCCAACTGGACTCAGCAATGGTTCATTCACTGATTGTGCAAAGCGTG 406
Query 352 ATCCAGAGGTGAACGAAGACACAGAGAAGAACTACGCCGAACTTTTAACAGAGGAACTGA 411
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 407 ATCCAGAGGTGAACGAAGACACAGAGAAGAACTACGCTGAACTTTTAACAGAGGAACTGA 466
Query 412 AGCAGCGTGAAGCAGCATCGATGGAGAAACACAAACGAGTAGACACAGGTTTGCTAGAGG 471
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 467 AGCAGCGTGAAGCAGCATCGATGGAGAAACACAAACGAGTAGACACGGGTCTGCTAGAGG 526
Query 472 CTAAGAAGATAACATCATCATACCAAAAGGAGGCAGATAAGTGTAACTCGGGTATGGAGA 531
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 527 CCAAGAAGATAACATCATCTTACCAAAAGGAGGCAGATAAGTGTAACTCGGGTATGGAGA 586
Query 532 CTTGTGAAGAAGCAAGAGAGAAGGCGGAAAAAGCACTTGTAGAGCAGAAGAAGCTGACTT 591
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 587 CTTGTGAAGAAGCAAGAGAGAAGGCGGAGAAAGCACTTGTGGAGCAGAAGAAGCTGACTT 646
Query 592 CTATGTGGGAACAGAGAGCTCGTCAGAAAGGATACAGAGATGGAGCCACCAAGTCAACTG 651
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 647 CTATGTGGGAACAGAGAGCTCGTCAGAAAGGATACAAAGATGGAGCCACCAAGTCAACTG 706
Query 652 TTAAATCCAAAAGCAGCGCTCAGGTTGCTTAAGTACACACCAAAGGTTTTGCTTTCTTAT 711
|||||||||||||| || || |||||||||||| ||||||||||||||||| ||||||||
Sbjct 707 TTAAATCCAAAAGCGGCACTGAGGTTGCTTAAGGACACACCAAAGGTTTTGATTTCTTAT 766
Query 712 CACACGAAAGATA-GTTTCATGTTACGCGTAACTGTGAATTTGATTCATACTATTGTATT 770
||||||||||| | |||||| || | || ||||||||||||||||||||||||||||
Sbjct 767 CACACGAAAGAAAAGTTTCA-GT---G--TATCTGTGAATTTGATTCATACTATTGTATT 820
Query 771 TTAGTTTTCTGATGGAG 787
| |||||||||||||||
Sbjct 821 TAAGTTTTCTGATGGAG 837
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38278420014
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5