BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482185
Length=1123
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32600.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 1727 0.0
AT5G37445.1 | Symbols: | pseudogene, similar to Similar to spl... 708 0.0
> AT2G32600.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr2:13833545-13835663 REVERSE LENGTH=1206
Length=1206
Score = 1727 bits (935), Expect = 0.0
Identities = 1047/1099 (95%), Gaps = 15/1099 (1%)
Strand=Plus/Plus
Query 30 TAGCGTGAAAGGAGATCGAAGTATTAAGAAGCTATGGACAGAGAATGGGGTTCCAAGCCT 89
||||||||||||||||| || | || ||||||||| |||||||||||||||||||||
Sbjct 110 TAGCGTGAAAGGAGATC---CTAGT-AGCAGCTATGGATAGAGAATGGGGTTCCAAGCCT 165
Query 90 GGTAGTGGAGGCGCCGCCTCCGGCCAAAACGAGGCCATAGATCGCCGCGAGCGTCTCCGT 149
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 166 GGTAGTGGCGGCGCCGCCTCCGGCCAAAACGAGGCCATAGATCGCCGTGAGCGTCTCCGT 225
Query 150 CGTCTTGCTCTTGAAACCATAGACCTTGCGAAAGATCCCTATTTCATGCGAAATCATCTT 209
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 226 CGTCTTGCTCTTGAAACCATAGACCTTGCTAAAGATCCGTATTTCATGCGAAATCATCTT 285
Query 210 GGAAGCTACGAGTGTAAACTATGTCTAACGCTGCATAACAACGAAGGAAACTACTTGGCA 269
|||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 286 GGAAGCTATGAGTGTAAACTATGTCTAACACTGCATAACAATGAAGGAAACTACTTGGCA 345
Query 270 CATACTCAAGGTAAGAGGCATCAGACAAACTTGGCAAAGAGAGCTGCTCGAGAGGCCAAG 329
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 346 CATACTCAAGGTAAGAGGCATCAGACAAACTTGGCAAAGAGAGCTGCTCGAGAGGCTAAG 405
Query 330 GATGCTCCTACTAAGCCTCAGCCACTCAAGCGCAATGTCTCAGTTCGCAGAACAGTTAAA 389
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 GATGCTCCTACTAAGCCGCAGCCACTCAAGCGCAATGTCTCAGTTCGCAGAACAGTTAAA 465
Query 390 ATTGGTAGACCAGGGTACCGGGTAACAAAGCAGTACGATCCCGAGCTGCAACAAAGATCT 449
||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 466 ATTGGTAGACCAGGGTACCGGGTTACAAAACAGTATGATCCCGAGCTGCAACAAAGATCT 525
Query 450 CTTCTGTTCCAGATTGAATATCCTGAGATAGAAGACAACATAAAGCCAAGACATCGTTTC 509
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 526 CTTCTGTTCCAGATTGAATATCCTGAGATAGAGGACAACATAAAGCCAAGACATCGTTTC 585
Query 510 ATGTCATCTTATGAGCAGAAAGTTCAACCTTATGACAAGAGATATCAATACCTTCTATTT 569
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 586 ATGTCATCTTATGAGCAGAAAGTTCAACCTTATGACAAGAGCTATCAATACCTTCTATTT 645
Query 570 GCAGCTGAACCATATGAAATCATAGCTTTCAAGGTTCCTAGCACAGAGGTTGATAAATCA 629
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 GCAGCCGAACCATATGAAATCATAGCTTTCAAGGTTCCTAGCACAGAGGTTGATAAATCA 705
Query 630 ACCCCAAAGTTTTTCTCTCACTGGGATCCAGACTCCAAGATGTTTACTCTGCAGGTGTAT 689
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 706 ACCCCAAAGTTTTTCTCTCACTGGGATCCAGACTCCAAGATGTTTACACTGCAGGTGTAT 765
Query 690 TTCAAGCCTACCAAGCCAGAACCAAACAAGCCTCAGTCCGCTGTTGGAGCAAATGGTCTT 749
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 766 TTCAAGCCTACCAAGCCAGAACCAAACAAGCCTCAGTCAGCTGTTGGAGCAAATGGTCTT 825
Query 750 ccaccgccaccaccaccaccgcc--a-caagctcaaccgccaccaccTCCTCCATCTGGT 806
||||||||||||||||| ||||| | |||||||||||||||||||| ||||||||||||
Sbjct 826 CCACCGCCACCACCACCCCCGCCTCATCAAGCTCAACCGCCACCACCACCTCCATCTGGT 885
Query 807 TTACTACCACCGCCACCACCTCCAATGGCAAACAATGGTTTTAGGCCCATGCCACCAGCT 866
||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 886 TTATTCCCACCGCCACCACCTCCAATGGCTAACAATGGTTTTAGGCCCATGCCACCAGCT 945
Query 867 GGAGGTTTCGGACATCCTAACATGTGAAAGAGAAACTAGCGAAGCAGTTTAAAAACACAG 926
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 946 GGAGGTTTCGGACATCCTAACATGTGAAAGAGAATCCAGCGAAGCAGTTTAAAAACACAG 1005
Query 927 TACTCTTATCATGATTTACTAAGAGAGAATGTGCTCTTTGACTGAAAAATATCAAATCTG 986
|||||| |||||| |||||||||||||| | |||||||||||||||||| ||||||||
Sbjct 1006 TACTCTGATCATGGTTTACTAAGAGAGACT-TGCTCTTTGACTGAAAAA---CAAATCTG 1061
Query 987 TTTTGACATGGATTCTCAAAGCTGTGATCTCTACAGG-TGTATTAGCTCTCTAGATACCT 1045
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1062 TTTTGACATGGATTCTCAAAGCTGTGATCTCTAC-GGATGTATTAGCTCTCTAGATACCT 1120
Query 1046 TCTA-GAAGTTTCTTCTATCTGTTTCTCGTATGTACCCTTTTGACAGGATTGGTTTCCGT 1104
||| || |||||||||||||| |||||||||||||| |||||||| ||||| |||||||
Sbjct 1121 TCTTTGA-GTTTCTTCTATCTGCTTCTCGTATGTACCATTTTGACAAGATTGTTTTCCGT 1179
Query 1105 TAATAGTACAATTAGAGTT 1123
||||||||||||||| |||
Sbjct 1180 TAATAGTACAATTAGCGTT 1198
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 1 AAATTTTCCAGCAATCGAGAGAGCAGCAC 29
|||||||||||||||||||||||||||||
Sbjct 48 AAATTTTCCAGCAATCGAGAGAGCAGCAC 76
> AT5G37445.1 | Symbols: | pseudogene, similar to Similar to splicing
factor 3a, subunit 2, 66kDa, blastp match of 60% identity
and 1.2e-63 P-value to GP|27371271|gb|AAH41254.1||BC041254
Similar to splicing factor 3a, subunit 2, 66kDa {Xenopus
laevis} | chr5:14851654-14852479 REVERSE LENGTH=826
Length=826
Score = 708 bits (383), Expect = 0.0
Identities = 571/659 (87%), Gaps = 24/659 (4%)
Strand=Plus/Plus
Query 63 ATGGACAGAGAATGGGGTTCCAAGCCTGGTAGTGGAGGCGCCGCCTCCGGCCAAAACGAG 122
||||| |||| ||||| || || |||||||| |||||||||||| ||||| | ||||||
Sbjct 1 ATGGATAGAGCGTGGGGGTCGAATCCTGGTAGCGGAGGCGCCGCCACCGGCTAGAACGAG 60
Query 123 GCCATAGATCGCCGCGAGCGTCTCCGTCGTCTTGCTCTTGAAACCATAGACCTTGCGAAA 182
|||||||||||||| || ||||||||||||||||||||||| |||||| || |||| |||
Sbjct 61 GCCATAGATCGCCGTGATCGTCTCCGTCGTCTTGCTCTTGACACCATAAACATTGCAAAA 120
Query 183 GATCCCTATTTCATGCGAAATCATCT-TGGAAGCTACGAGTGTAAACTATGT-CTAACGC 240
||||| ||||||| | |||||| || ||||||||| ||||||| ||||||| | ||||
Sbjct 121 GATCCTTATTTCAAACAAAATCA-CTATGGAAGCTATGAGTGTAGACTATGTGC-AACGT 178
Query 241 TGCATAACAACGAAGGAAACTACTTGGCACATACTCAAGGTAAGAGGCATCAGACAAACT 300
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 179 TGCATAACAACGAAGGAAACTACTTGGTACATACTCAAGGTAAGAAGCATCAGACAAACT 238
Query 301 TGGCAAAGAGAGCTGC-TCGAGAGGCCAAGGATGCT-C--CT-A-CT--AAGC-CT-CAG 350
|||||||||||||||| | | ||||| ||| ||||| | || | | || | || |||
Sbjct 239 TGGCAAAGAGAGCTGCCTTG-GAGGCTAAGAATGCTTCAGCTCAGCCGCAACCGCTGCAG 297
Query 351 CCAC-TCAAGCGCAATGTCTCAGTTCGCAGAACAGTTAAAATTGGTAGACCAGGGTACCG 409
|||| | |||||||| ||||||||||||| |||||||||||| |||||||||||||| |
Sbjct 298 CCACAT-AAGCGCAAAGTCTCAGTTCGCAAAACAGTTAAAATCGGTAGACCAGGGTATAG 356
Query 410 GGTAACAAAGCAGTACGATCCCGAGCTGCAA-CAAAGATCTCTTCTGTTCCAGATTGAAT 468
||| |||||||| |||||||| |||||| || ||||||||| || |||||||||||||||
Sbjct 357 GGTTACAAAGCAATACGATCCTGAGCTG-AAGCAAAGATCTATTATGTTCCAGATTGAAT 415
Query 469 ATCCTGAGATAGAAGACAACATAAAGCCAAGACATCGTTTCATGTCATCTTATGAGCAGA 528
|||||||||| || |||||||||||||| |||||||||| ||||||||||||||| ||||
Sbjct 416 ATCCTGAGATTGAGGACAACATAAAGCCGAGACATCGTTCCATGTCATCTTATGAACAGA 475
Query 529 AAGTTCAACCTTATGACAAGAGATATCAATACCTTCTATTTGCAGCTGAACCATATGAAA 588
| |||||||||| |||||||| ||||||||||||| || |||||||||||||||||||||
Sbjct 476 ATGTTCAACCTTGTGACAAGAAATATCAATACCTTTTAATTGCAGCTGAACCATATGAAA 535
Query 589 TCATAGCTTTCAAGGTTCCTAGCACAGAGGTTGATAAATCAACCCCAAAGTTTTTCTCTC 648
|||| ||||||| ||||| ||||| ||| |||||||||||||| || |||||||||||
Sbjct 536 CCATATCTTTCAAAGTTCCAAGCACTGAGATTGATAAATCAACC--AA-GTTTTTCTCTC 592
Query 649 ACTGGGATCCAGACTCCAAGATGTTTACTCTGCAGGTGTATTTCAA-GCCTACCAAGCC 706
| |||||||| ||||||||||| |||||| |||| |||| ||| || ||| || |||||
Sbjct 593 ATTGGGATCCTGACTCCAAGATATTTACTTTGCATGTGTGTTTTAAAGCCAAC-AAGCC 650
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55069997865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5