BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482187
Length=1818
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32630.1 | Symbols: | Pentatricopeptide repeat (PPR-like) s... 2752 0.0
AT1G05061.1 | Symbols: | Pseudogene of AT2G32630; pentatricope... 388 8e-107
> AT2G32630.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr2:13844834-13846708 FORWARD LENGTH=1875
Length=1875
Score = 2752 bits (1490), Expect = 0.0
Identities = 1687/1782 (95%), Gaps = 13/1782 (1%)
Strand=Plus/Plus
Query 49 AAGCAGCCAGAAGAATCACGGCGTGCCTGGT-G-G---------ATCGGAAAACTCCAGT 97
||||||||||||||||||||||||||||||| | | ||||||||||| || |
Sbjct 95 AAGCAGCCAGAAGAATCACGGCGTGCCTGGTGGAGAAATCCACCATCGGAAAACTTCAAT 154
Query 98 CGAATCCATCTCTTCTCTTCAATTTGAATTCAAACGTAACCCGTCTCGTTCTATCTGACC 157
|||||||||| || |||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 155 CGAATCCATCACTCCTCTTCAATTTGAATTCAAATGTTACCCGTCTCGTTCTATCTGAGC 214
Query 158 CATCTCTTGCCACTCAATCGTGCATCGATTTCTTCAAGTTTCTCCGCGAATTTGAATCCA 217
|| ||||| |||||||||| |||||||||||||||||| |||| |||||||| ||||| |
Sbjct 215 CAACTCTTCCCACTCAATCCTGCATCGATTTCTTCAAGCTTCTTCGCGAATTCGAATCTA 274
Query 218 ATCTCAAACCCGATCTCACGGCAGTAGTAACTTTATCTCACCGGTTATATTCTAACCGGA 277
|||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 275 ATCTCAAACCTGATCTCACGGCGGTAGTGACTTTATCTCACCGGTTATATTCTAACCGGA 334
Query 278 GGTTCAGTGAGATGAGATTGCTTCTGAATTCGGTTGTTAACGACGGGTTTTACGAGCGCC 337
|||||| ||||||||||| |||||||||||| ||||||||||||||||||||| |||| |
Sbjct 335 GGTTCAATGAGATGAGATCGCTTCTGAATTCAGTTGTTAACGACGGGTTTTACAAGCGTC 394
Query 338 CAGTTGA-GAGTTTAGGATCAGCGATGGTGGATTGTGACATTTCTGAAGAAAAGTTTGAA 396
| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 CGGTTGAGGAG-TTAGGATCAGCGATGGTGGATTGTGACATTTCTGAAGAAAAGTTTGAA 453
Query 397 TTTTGGGAAAAGTTTTTCGATTTGGTCTTTAGGGTTTATGTTGATAACGGAATGTTTGAA 456
|||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 454 TTTTTCGAAAAGTTTTTCGATTTGGTATTTAGGGTGTATGTTGATAACGGAATGTTTGAA 513
Query 457 GAGGGTTTAAGGGTTTTCGATTACATGGTTAAAAAGGGATTGAGTATTGATGAAAGATCA 516
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 514 GAGGGTTTAAGGGTTTTTGATTACATGGTTAAAAAGGGATTGAGTATTGATGAAAGATCC 573
Query 517 TGCATTGTGTTTTTGGTTGCGGCGAAGAAACGCCGGAGAATTGATCTCTGTTTGGAAATT 576
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 574 TGCATTGTGTTTTTGGTTGCGGCGAAGAAGCGACGGAGAATTGATCTCTGTTTGGAAATT 633
Query 577 TTCCGGCGAATGGTTGATTCTGGAGTGAAGATAACTGTCTATTCATTGACAATTGTGGTT 636
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 634 TTCCGGCGAATGGTTGATTCTGGAGTGAAGATAACTGTTTATTCATTGACGATTGTGGTT 693
Query 637 GAAGGATTATGTAGAAGAGGTGAAGTTGAGAAGAGTAAGAAGCTGATTAAGGAGTTTTCT 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 GAAGGATTATGTAGAAGAGGTGAAGTTGAGAAGAGTAAGAAGCTGATTAAGGAGTTTTCT 753
Query 697 GGTAAAGGGATTAAACCTGAAGCTTATACTTACAACACTATTATCAATGCTTATCTTAAA 756
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 754 GTTAAAGGGATTAAACCTGAAGCTTATACTTACAACACTATTATCAATGCTTATGTTAAA 813
Query 757 CACAGAGATTTCTCTGGTGTAGAAAAGATTTTGAAGTTGATGAAGAAAGATGGTGTGGTG 816
|| ||||||||||| ||||| ||| | |||||||| |||||||||| ||||||||||||
Sbjct 814 CAGAGAGATTTCTCGGGTGTGGAAGGGGTTTTGAAGGTGATGAAGAAGGATGGTGTGGTG 873
Query 817 TATAATAAGGTTACGTATACGCTTTTGATAGAATTGAGTGTTAAGAATGGGAAAATGAAT 876
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 874 TATAACAAGGTTACGTATACGCTTTTGATGGAATTGAGTGTTAAGAATGGGAAAATGAGT 933
Query 877 GATGTGGAGAAGCTGTTTGATGGAATGCGTGAGAGAGGGATAGAATCTGATATTCATGTG 936
|||| |||||||||||| |||| ||||||||||||||| |||||||||||| ||||||||
Sbjct 934 GATGCGGAGAAGCTGTTCGATGAAATGCGTGAGAGAGGAATAGAATCTGATGTTCATGTG 993
Query 937 TATACTTCTTTAATAAGTTGGCATTGTAGAAAGGGAAATATAAAAAGAGCGTTTTTGTTG 996
||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 994 TATACTTCTTTGATAAGTTGGAATTGTAGAAAGGGAAATATGAAAAGAGCGTTTTTGTTG 1053
Query 997 TTTGATGAATTGACGGAGAAGGGACTTTCGCCGAGTAGTCATACTTATGGGGCACTTATC 1056
|||||||||||||| |||||||||||||||||||||||| |||| || ||||| |||||
Sbjct 1054 TTTGATGAATTGACAGAGAAGGGACTTTCGCCGAGTAGTTATACCTACGGGGCGCTTATT 1113
Query 1057 GACGGGGTGTGTAAGGTAGGGGAAATGAGTGCAGCTGAGATATTGATGAACGAGATGCAA 1116
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1114 GACGGGGTGTGTAAGGTAGGGGAAATGGGTGCAGCTGAGATATTGATGAACGAGATGCAA 1173
Query 1117 AGTAAAGGAGTTAATATCACTCAGGTGGTGTTTAATACGTTGATTAATGGGTATTGCAGG 1176
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1174 AGTAAAGGAGTTAATATCACTCAGGTGGTGTTTAATACGTTGATTGATGGGTATTGCAGG 1233
Query 1177 AAAGGGATGATTGATGAAGCGTCAATGATTTATGATGTGATGGAGAAGAAAGGGTTTCAA 1236
||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1234 AAAGGGATGGTTGATGAAGCATCAATGATTTATGATGTGATGGAGCAGAAAGGGTTTCAA 1293
Query 1237 GCTGATGTTTTCACTTGTAATACGATTGCTAGCTGTTTCAATAGATTGAAAAGGTATGAT 1296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1294 GCTGATGTTTTCACTTGTAATACGATTGCTAGCTGTTTCAATAGATTGAAAAGGTATGAT 1353
Query 1297 GAGGCAAAGCAATGGCTGTTTAGGATGATGGAGGGTGGAGTGAAGCTTAGCACGGTTAGT 1356
|||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1354 GAGGCAAAACAATGGCTGTTCAGGATGATGGAGGGTGGTGTGAAGCTTAGCACGGTTAGT 1413
Query 1357 TATACTAATTTGATCGATGTTTACTGCAAAGAAGGGAACGTTGAGGAGGCAAAGAGGCTA 1416
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1414 TATACTAATTTGATCGATGTTTACTGCAAAGAAGGGAACGTTGAAGAGGCAAAGAGGCTA 1473
Query 1417 TTTGTAGAGATGAGCAGCAAGGAAGTACAGCCCAACGCTATCACCTACAATGTGATGATT 1476
||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1474 TTTGTGGAGATGAGCAGCAAGGGAGTACAGCCCAACGCTATCACGTACAATGTGATGATC 1533
Query 1477 TATGCGTACTGCAAGCAAGGGAAAGTAAAAGAAGCACGTAAACTATGGGCCAACATGGAA 1536
|| || |||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1534 TACGCTTACTGCAAGCAAGGGAAAATAAAAGAAGCACGTAAACTAAGGGCCAACATGGAA 1593
Query 1537 GCAAATGGGATGAATCCGGATTCATATACCTACACGTCACTCATACACGGGGAATGTATT 1596
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1594 GCAAATGGGATGGATCCGGATTCATATACCTACACGTCGCTCATACACGGGGAATGTATT 1653
Query 1597 GCTGATAACGTGGATGAAGCAATGAGGCTCTTTAGCGAGATGGGGTTGAAGGGTTTGGAC 1656
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1654 GCTGATAATGTGGATGAAGCAATGAGGCTCTTTAGCGAGATGGGGTTGAAGGGTTTGGAC 1713
Query 1657 CAGAATTCTGTTACATACACGGTGATGATCTCGGGTTTGTCCAAAGCTGGAAAATCAGAC 1716
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1714 CAGAATTCTGTTACGTACACGGTGATGATCTCGGGTTTGTCCAAAGCTGGAAAATCAGAC 1773
Query 1717 GAAGCCTTTGGATTGTACGATGAGATAAAAAGGAAAGGGTATACAATAGATAATAAGGTT 1776
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1774 GAAGCCTTTGGATTGTACGATGAGATGAAAAGGAAAGGGTATACAATAGATAATAAGGTT 1833
Query 1777 TATACTGCACTCATTGGAAGTATGCATTCACCTGAGACTTAA 1818
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1834 TATACTGCACTCATTGGAAGTATGCATTCACCTGAGACTTAA 1875
> AT1G05061.1 | Symbols: | Pseudogene of AT2G32630; pentatricopeptide
(PPR) repeat-containing protein | chr1:1453216-1454260
REVERSE LENGTH=1045
Length=1045
Score = 388 bits (210), Expect = 8e-107
Identities = 669/876 (76%), Gaps = 89/876 (10%)
Strand=Plus/Plus
Query 717 AGCTTATACTT-ACAACACTATTATCAATGCTTATC-TTAAACACAGAGATTTCTCTGG- 773
||||||||||| ||||||| |||||||||||||| | ||||| | ||||||| | |||
Sbjct 36 AGCTTATACTTAACAACACCATTATCAATGCTTA-CGTTAAAAAGGGAGATTT-TTTGGC 93
Query 774 TGTAGAAAAGATTTTGAAGTTGATGAAGAAAGATG-GTGTGGTGTATAATAAGGTTACGT 832
|||||||||||| ||||| |||||||||| || | ||| |||||| | |||
Sbjct 94 GGTAGAAAAGATTCTGAAGGTGATGAAGAAGGA-GAACGTGACGTATAACGCTGCTAC-- 150
Query 833 ATACGCTTTTGATAGAATTGAGTGT-TAAG-AATGGGAAAATGAATGATGTGGAGAAGCT 890
||||| ||||||| | || || || |||| || |||||| || ||||| ||||| ||
Sbjct 151 ATACGATTTTGATTGGGTT-AG-GTATAAGTAACGGGAAATTGGTTGATGCAGAGAAACT 208
Query 891 GTTTGATGGAATGCGTGAGAGAGGGATAGAATCT-GATATTCATGTG-TATACTTCTTTA 948
||| || | ||||| ||||||||| ||||||| | ||||| |||||| ||||||||| |
Sbjct 209 GTTCGACGAAATGCCTGAGAGAGGAATAGAAT-TAGATATACATGTGTTATACTTCTCTC 267
Query 949 ATAAGTTGGCATTGTAGAAAG-GGAAATATAAAAAGAGCGTTTTTGTTGTTTGATGAATT 1007
||||||| | |||| |||||| || ||| | ||||||||| ||||||||||||||||||
Sbjct 268 ATAAGTTAGAATTGCAGAAAGAGG-AATGTCAAAAGAGCG--TTTGTTGTTTGATGAATT 324
Query 1008 GACGGAGAAGGGACTTTCGCCGAGTAGTCATACTTATGGGGCACTTATCGACGGG-GTGT 1066
|| ||| |||| ||||| |||||||||| ||||| | | | | | ||| | |
Sbjct 325 GATAGAGCAGGGTCTTTCACCGAGTAGTC--ACTTA--GAG-A---A---AAGGGATTAT 373
Query 1067 GTAAGGT-AGGGGAAATGAGTGCAGCTGAGATATT-GAT-GAACGAGATGCAAAGTAAAG 1123
|| ||| |||||||||||| | |||||||| || | | ||| |||||||| || |
Sbjct 374 GT-TGGTGTGGGGAAATGAGTACGGCTGAGATGTTGGTTGGAA-GAGATGCAGAGCCGTG 431
Query 1124 GAGTTAATATCACTCAGGTGGTGTTTAATACGTT-GATTAATGGGTATTGCAGGAAA-GG 1181
||||||| || |||||||||||||| ||||| || ||||||||||| ||||| ||| ||
Sbjct 432 GAGTTAACATTACTCAGGTGGTGTTCAATAC-TTCAATTAATGGGTACTGCAGAAAAGGG 490
Query 1182 -G-AT-GAT--TG-A-TGA-AGCG-TCA-ATGAT-T-T--A--TGATGTGATGGAGAAGA 1225
| || ||| || | ||| |||| | | || || | | | |||||||||||||||||
Sbjct 491 AGTATCGATGATGCATTGATAGCGTTGAGAT-ATATCTCAAGCTGATGTGATGGAGAAGA 549
Query 1226 AAGGGTTTCAAGCTGATG-TTTTCACTTGTAATAC-GATTGCTAGCTGTTTCAATAGATT 1283
|||||||||||||||||| |||| |||| ||| | | |||||| | | | | | |
Sbjct 550 AAGGGTTTCAAGCTGATGCTTTT-ACTTATAACGCGGTTTGCTA--AG--T--A-A-A-T 599
Query 1284 GAAAA-GGTATGATGAGGCAAAGCAATGGCTGTTTAGGATGATGGAGGGT-GGAGTGAAG 1341
|||| | |||| |||||||||||| ||| |||| | |||||| || | | |||| ||
Sbjct 600 CAAAACGATATGGTGAGGCAAAGCACTGGTTGTTCACGATGATTGA---TAGAAGTG-AG 655
Query 1342 CTTAGCACGGTTAG-TTATACTAATTTGATCGATGTTTACTGCAAAGA-AGGGAACGTT- 1398
| || |||||| | |||||||| |||| ||| ||||||||||| | || |||| ||
Sbjct 656 CGTAAAACGGTT-GACCATACTAATCTGATTGATATTTACTGCAAA-ATAGAGAAC-TTC 712
Query 1399 GAGGAGGCAAAGAGGCTATTTGTAGAGATGAG-CAGC-AAGGAAGTACAGC--CC-AACG 1453
| |||||||||| |||| ||| ||||||| | || | ||| || ||| | || || |
Sbjct 713 AAAGAGGCAAAGAAGCTACTTGAAGAGATG-GCCATCTGAGGGAGAACAACAACCTAATG 771
Query 1454 CTATCACCTACAATGTGATGATTTATGCGTACTGCAAGCAAGGGAAAGTAAAAGAAGCAC 1513
| |||| || ||||||||||| |||||||||||||||||||||||||||| ||||| |
Sbjct 772 TTGTCACTTAAAATGTGATGATCAATGCGTACTGCAAGCAAGGGAAAGTAAAGGAAGCTC 831
Query 1514 GTAAACTATGGGCCAACATGGAAG-CAAATGGGATG 1548
| |||||| || | || |||||| |||| || |||
Sbjct 832 GGAAACTAAGGACGGACTTGGAAGACAAAAGG-ATG 866
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89959376640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5