BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482190
Length=597
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32650.1 | Symbols: | RmlC-like cupins superfamily protein ... 688 0.0
AT2G32180.1 | Symbols: PTAC18 | plastid transcriptionally activ... 682 0.0
AT2G32645.1 | Symbols: | Domain of unknown function (DUF313) ... 492 2e-138
AT2G32179.1 | Symbols: | other RNA | chr2:13671841-13673376 FO... 475 2e-133
AT2G27402.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 265 4e-70
> AT2G32650.1 | Symbols: | RmlC-like cupins superfamily protein
| chr2:13851062-13852080 FORWARD LENGTH=636
Length=636
Score = 688 bits (372), Expect = 0.0
Identities = 515/577 (89%), Gaps = 37/577 (6%)
Strand=Plus/Plus
Query 56 CTCACTCACAGTTCCGATATGGTTTCACAAGA-T---T-G--GCAGCCATGGCAAGTCTG 108
|||||||||| ||||| ||||||||||||| | | | ||||||||||||||||||
Sbjct 57 CTCACTCACACTTCCG--CTGGTTTCACAAGATTGGATAGAAGCAGCCATGGCAAGTCTG 114
Query 109 ATAATGACCACACCATTCCCAGGTTCTGTCACTACATGTAAGAAGACAAATAACCTGTCT 168
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 115 ATAATGACTACACCATTCCCAGGTTCTGTCACTGCATGTAAGAAGACAAATAACCTGTCT 174
Query 169 GTTCAGAGAGCTTTTAGGGTGACATGTATGCAGACTGAGAAACCCTTGGAAGAGCTATAC 228
||||||||||| |||| |||||| ||||||||||| |||||||| || || |||||||||
Sbjct 175 GTTCAGAGAGCCTTTAAGGTGACTTGTATGCAGACAGAGAAACCATTAGAGGAGCTATAC 234
Query 229 AATGTTAAAGTGGAAAGGAAAGTTTCACAGAAACGGTTGGAGGAACTCGGGGTTTCGAGA 288
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 AATGTTAAAGTGGAACGGAAAGTTTCACAGAAACGGTTGGAGGAACTCGGGGTTTCGAGA 294
Query 289 TGGTCAGTTTGGAAGACAGGCAAGTGCAAATTGCCATGGGATTGGCAGGTGGATCAGTTG 348
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 295 TGGTCAGTTTGGAAGACAGGGAAATGCAAATTGCCATGGGATTGGCAGGTGGATCAGTTG 354
Query 349 GTTTACATTGAAGAAGGAGAGGTTCGAGTTGTTCCTGAAGGAAGCAAGAGGTATATGCAG 408
|||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 355 GTTTACATTGAACAAGGAGAGGTTCGAGTAGTTCCCGAAGGAAGCAAGAGGTATATGCAG 414
Query 409 TTTTTAGCTGGAGATCTTGTTCGGTATCCAAAATGGTTGGAAGCGGATCTTTTCTTTAAT 468
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 415 TTTTTAGCTGGAGATCTTGTTCGGTATCCGAAATGGTTGGAAGCTGATCTTTTCTTTAAC 474
Query 469 GCTCCGTACCGTGAACGGTATTGTTTCAAGGCCTA---TG--G--TG-----A--T-GA- 512
||||| || ||| |||||||||||||||||||| || | || | | ||
Sbjct 475 GCTCCTTATATTGAGCGGTATTGTTTCAAGGCCTATGGTGATGATTGATCCAACTTAGAC 534
Query 513 --TTGA-----T--TAGAGCCAAGAAACTTTACAC---TTGTGTGTTGTTGTAGCCTGAT 560
|||| | ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 535 TTTTGAGTTTTTAGTAGAGCCAAGAAACTTTACACTTGTTGTGTGTTGTTGTAGCCTGAT 594
Query 561 GGATCTTTTTGTGATAATATAAGAAAACAAGTTCTCT 597
|||||||||||||||||||||||||||||||||||||
Sbjct 595 GGATCTTTTTGTGATAATATAAGAAAACAAGTTCTCT 631
> AT2G32180.1 | Symbols: PTAC18 | plastid transcriptionally active
18 | chr2:13672250-13673256 REVERSE LENGTH=628
Length=628
Score = 682 bits (369), Expect = 0.0
Identities = 514/577 (89%), Gaps = 37/577 (6%)
Strand=Plus/Plus
Query 56 CTCACTCACAGTTCCGATATGGTTTCACAAGATT-G------GCAGCCATGGCAAGTCTG 108
|||||||||| ||||| |||||| |||||||| | ||||||||||||||||||
Sbjct 51 CTCACTCACACTTCCG--CTGGTTTGACAAGATTGGATAAAAGCAGCCATGGCAAGTCTG 108
Query 109 ATAATGACCACACCATTCCCAGGTTCTGTCACTACATGTAAGAAGACAAATAACCTGTCT 168
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 109 ATAATGACTACACCATTCCCAGGTTCTGTCACTACATGTAAGAAGACAAATAACCTGTCA 168
Query 169 GTTCAGAGAGCTTTTAGGGTGACATGTATGCAGACTGAGAAACCCTTGGAAGAGCTATAC 228
||||| ||||| ||||||||||| ||||||||||| |||||||| || || |||||||||
Sbjct 169 GTTCAAAGAGCCTTTAGGGTGACTTGTATGCAGACAGAGAAACCATTAGAGGAGCTATAC 228
Query 229 AATGTTAAAGTGGAAAGGAAAGTTTCACAGAAACGGTTGGAGGAACTCGGGGTTTCGAGA 288
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 229 AATGTTAAAGTGGAACGGAAAGTTTCACAGAAACGGTTGGAGGAACTTGGGGTTTCGAGA 288
Query 289 TGGTCAGTTTGGAAGACAGGCAAGTGCAAATTGCCATGGGATTGGCAGGTGGATCAGTTG 348
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 289 TGGTCAGTTTGGAAGACAGGGAAATGCAAATTGCCATGGGATTGGCAGGTGGATCAGTTG 348
Query 349 GTTTACATTGAAGAAGGAGAGGTTCGAGTTGTTCCTGAAGGAAGCAAGAGGTATATGCAG 408
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 349 GTTTACATTGAACAAGGAGAGGTTCGAGTTGTTCCCGAAGGAAGCAAGAGGTATATGCAG 408
Query 409 TTTTTAGCTGGAGATCTTGTTCGGTATCCAAAATGGTTGGAAGCGGATCTTTTCTTTAAT 468
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 409 TTTTTAGCTGGAGATCTTGTTCGGTATCCGAAATGGTTGGAAGCTGATCTTTTCTTTAAC 468
Query 469 GCTCCGTACCGTGAACGGTATTGTTTCAAGGCCTA---TG--G--TG-----A---TGA- 512
||||| || ||| |||||||||||||||||||| || | || | |||
Sbjct 469 GCTCCTTATATTGAGCGGTATTGTTTCAAGGCCTATGGTGATGATTGATCCAACTTTGAC 528
Query 513 --TTGA-----T--TAGAGCCAAGAAACTTTACAC---TTGTGTGTTGTTGTAGCCTGAT 560
|||| | ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 529 TTTTGAGTTTTTAGTAGAGCCAAGAAACTTTACACTTGTTGTGTGTTGTTGTAGCCTGAT 588
Query 561 GGATCTTTTTGTGATAATATAAGAAAACAAGTTCTCT 597
|||||||||||||||||||||||||||||||||||||
Sbjct 589 GGATCTTTTTGTGATAATATAAGAAAACAAGTTCTCT 625
> AT2G32645.1 | Symbols: | Domain of unknown function (DUF313)
| chr2:13851667-13853343 REVERSE LENGTH=1376
Length=1376
Score = 492 bits (266), Expect = 2e-138
Identities = 364/406 (90%), Gaps = 28/406 (7%)
Strand=Plus/Minus
Query 220 GAGCTATACAATGTTAAAGTGGAAAGGAAAGTTTCACAGAAACGGTTGGAGGAACTCGGG 279
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1373 GAGCTATACAATGTTAAAGTGGAACGGAAAGTTTCACAGAAACGGTTGGAGGAACTCGGG 1314
Query 280 GTTTCGAGATGGTCAGTTTGGAAGACAGGCAAGTGCAAATTGCCATGGGATTGGCAGGTG 339
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1313 GTTTCGAGATGGTCAGTTTGGAAGACAGGGAAATGCAAATTGCCATGGGATTGGCAGGTG 1254
Query 340 GATCAGTTGGTTTACATTGAAGAAGGAGAGGTTCGAGTTGTTCCTGAAGGAAGCAAGAGG 399
||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||
Sbjct 1253 GATCAGTTGGTTTACATTGAACAAGGAGAGGTTCGAGTAGTTCCCGAAGGAAGCAAGAGG 1194
Query 400 TATATGCAGTTTTTAGCTGGAGATCTTGTTCGGTATCCAAAATGGTTGGAAGCGGATCTT 459
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1193 TATATGCAGTTTTTAGCTGGAGATCTTGTTCGGTATCCGAAATGGTTGGAAGCTGATCTT 1134
Query 460 TTCTTTAATGCTCCGTACCGTGAACGGTATTGTTTCAAGGCCTA---TG--G--TG---- 508
|||||||| ||||| || ||| |||||||||||||||||||| || | ||
Sbjct 1133 TTCTTTAACGCTCCTTATATTGAGCGGTATTGTTTCAAGGCCTATGGTGATGATTGATCC 1074
Query 509 -A--T-GA---TTGA-----T--TAGAGCCAAGAAACTTTACAC---TTGTGTGTTGTTG 551
| | || |||| | ||||||||||||||||||||| |||||||||||||
Sbjct 1073 AACTTAGACTTTTGAGTTTTTAGTAGAGCCAAGAAACTTTACACTTGTTGTGTGTTGTTG 1014
Query 552 TAGCCTGATGGATCTTTTTGTGATAATATAAGAAAACAAGTTCTCT 597
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 TAGCCTGATGGATCTTTTTGTGATAATATAAGAAAACAAGTTCTCT 968
> AT2G32179.1 | Symbols: | other RNA | chr2:13671841-13673376
FORWARD LENGTH=1004
Length=1004
Score = 475 bits (257), Expect = 2e-133
Identities = 355/397 (89%), Gaps = 28/397 (7%)
Strand=Plus/Minus
Query 229 AATGTTAAAGTGGAAAGGAAAGTTTCACAGAAACGGTTGGAGGAACTCGGGGTTTCGAGA 288
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 493 AATGTTAAAGTGGAACGGAAAGTTTCACAGAAACGGTTGGAGGAACTTGGGGTTTCGAGA 434
Query 289 TGGTCAGTTTGGAAGACAGGCAAGTGCAAATTGCCATGGGATTGGCAGGTGGATCAGTTG 348
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 433 TGGTCAGTTTGGAAGACAGGGAAATGCAAATTGCCATGGGATTGGCAGGTGGATCAGTTG 374
Query 349 GTTTACATTGAAGAAGGAGAGGTTCGAGTTGTTCCTGAAGGAAGCAAGAGGTATATGCAG 408
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 373 GTTTACATTGAACAAGGAGAGGTTCGAGTTGTTCCCGAAGGAAGCAAGAGGTATATGCAG 314
Query 409 TTTTTAGCTGGAGATCTTGTTCGGTATCCAAAATGGTTGGAAGCGGATCTTTTCTTTAAT 468
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 313 TTTTTAGCTGGAGATCTTGTTCGGTATCCGAAATGGTTGGAAGCTGATCTTTTCTTTAAC 254
Query 469 GCTCCGTACCGTGAACGGTATTGTTTCAAGGCCTA---TG--G--TG-----A---TGA- 512
||||| || ||| |||||||||||||||||||| || | || | |||
Sbjct 253 GCTCCTTATATTGAGCGGTATTGTTTCAAGGCCTATGGTGATGATTGATCCAACTTTGAC 194
Query 513 --TTGA-----T--TAGAGCCAAGAAACTTTACAC---TTGTGTGTTGTTGTAGCCTGAT 560
|||| | ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 193 TTTTGAGTTTTTAGTAGAGCCAAGAAACTTTACACTTGTTGTGTGTTGTTGTAGCCTGAT 134
Query 561 GGATCTTTTTGTGATAATATAAGAAAACAAGTTCTCT 597
|||||||||||||||||||||||||||||||||||||
Sbjct 133 GGATCTTTTTGTGATAATATAAGAAAACAAGTTCTCT 97
> AT2G27402.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: plastid transcriptionally active 18 (TAIR:AT2G32180.1);
Has 35333 Blast hits to 34131 proteins in 2444 species:
Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991;
Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source:
NCBI BLink). | chr2:11723525-11724362 FORWARD LENGTH=838
Length=838
Score = 265 bits (143), Expect = 4e-70
Identities = 159/167 (95%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 101 CAAGTCTGATAATGACCACACCATTCCCAGGTTCTGTCACTACATGTAAGAAGACAAATA 160
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 496 CAAGTCTGATAATGACCACATCATTCCCAGGTTCTGTCACTACATGTAAGAAGACAAATA 555
Query 161 ACCTGTCTGTTCAGAGAGCTTTTAGGGTGACATGTATGCAGACTGAGAAACCCTTGGAAG 220
||||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||| |
Sbjct 556 ACCTGTCTGTTCAGAGAGCCTTTAGGGTGACTTGTATGCAGACAGAGAAACCGTTGGAGG 615
Query 221 AGCTATACAATGTTAAAGTGGAAAGGAAAGTTTCACAGAAACGGTTG 267
|| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 616 AGTTATACAATGTTAAAGTGGAAAGGAAAGTTTCAAAGAAACGGTTG 662
Score = 124 bits (67), Expect = 8e-28
Identities = 77/81 (95%), Gaps = 3/81 (4%)
Strand=Plus/Plus
Query 519 AGAGCCAAGAAACTTTACACTTG-T--GTGTTGTTGTAGCCTGATGGATCTTTTTGTGAT 575
||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||
Sbjct 746 AGAGCCAAGAAACTTTACACTTGTTGCGTGTTGTTGTAGCCTGATGGATCTTCTTGTGAT 805
Query 576 AATATAAGAAAACAAGTTCTC 596
|||||||||||||||||||||
Sbjct 806 AATATAAGAAAACAAGTTCTC 826
Score = 60.2 bits (32), Expect = 2e-08
Identities = 65/79 (82%), Gaps = 10/79 (13%)
Strand=Plus/Plus
Query 439 AAATGGTTGGAAGCGGATCTTTTCTTTAATGCTCCGTACCGTGAACGGTATTGTTTCAAG 498
||| ||||| |||| |||||||||||||| ||||| | | | ||||||||||||
Sbjct 654 AAACGGTTGTAAGCTGATCTTTTCTTTAACGCTCC-T----T--A---TATTGTTTCAAG 703
Query 499 GCCTATGGTGATGATTGAT 517
|||||||||||||||||||
Sbjct 704 GCCTATGGTGATGATTGAT 722
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28733932084
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5