BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482208
Length=700
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32720.1 | Symbols: B5 #4, ATCB5-B, CB5-B | cytochrome B5 is... 1085 0.0
> AT2G32720.1 | Symbols: B5 #4, ATCB5-B, CB5-B | cytochrome B5
isoform B | chr2:13876774-13878531 REVERSE LENGTH=728
Length=728
Score = 1085 bits (587), Expect = 0.0
Identities = 667/705 (95%), Gaps = 8/705 (1%)
Strand=Plus/Plus
Query 1 CTCTTGTATAAAGTTTTTAGCTTTAAATCTCAGAGTCAGGTTTTGGTGGGTTAATTCTGG 60
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 4 CTCTTGTATAAAGTTTTGAGCTTTAAGTCTCAGAGTCAGGTTTTGGTGGGTTAATTCTGG 63
Query 61 TAGACAAGAAT----CAAACAATGGGAGACGAAGCAAAGATCTTCACTCTTTCAGAAGTT 116
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 TAGACAAGAATCAAACAAACAATGGGAGACGAAGCAAAGATCTTCACTCTTTCAGAAGTT 123
Query 117 TCAGAGCATAATCAAGCTCATGACTGTTGGATTGTCATCAATGGAAAGGTGTACAATGTG 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 TCAGAGCATAATCAAGCTCATGACTGTTGGATTGTCATCAATGGAAAGGTGTACAATGTG 183
Query 177 ACCAAGTTTCTTGAAGACCATCCAGGTGGGGATGATGTTCTCTTGTCTTCAACAGGTAAG 236
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 184 ACCAAGTTTCTTGAAGACCATCCAGGTGGGGACGATGTTCTCTTGTCTTCAACAGGTAAG 243
Query 237 GATGCAACCGATGATTTTGAGGACGTGGGTCATAGCGAGAGTGCAAGAGAAATGATGGAG 296
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 244 GATGCAACGGATGATTTTGAGGACGTGGGTCACAGCGAGAGTGCAAGAGAAATGATGGAG 303
Query 297 CAATACTACGTAGGAGAGATTGATCCGACAACAATACCAAAGAAAGTCAAATACGCACCT 356
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 304 CAGTACTACGTAGGAGAGATTGATCCAACAACAATACCAAAGAAAGTCAAATACACACCT 363
Query 357 CCTAAACAGCCTCACTACAATCAAGACAAGACCTCTGAATTCATAATCAAGATCCTCCAA 416
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 364 CCTAAACAGCCTCACTACAATCAAGACAAGACCTCTGAATTCATAATCAAGCTCCTCCAG 423
Query 417 TTCCTTGTACCCCTTGCCATACTCGGTTTAGCAGTCGGGATTCGCATTTACACCAAATCA 476
||||| |||||||||||||| || |||||||||||||| || || || ||||||||||||
Sbjct 424 TTCCTCGTACCCCTTGCCATTCTTGGTTTAGCAGTCGGAATCCGTATCTACACCAAATCA 483
Query 477 GGGTAGGCTTCTTCtttttttCTGAGCATTACTACCATATATCTTATATATAGAGAGAAA 536
||||||||||||| |||||| |||||||||||| || |||||||||||||||||||||||
Sbjct 484 GGGTAGGCTTCTT-TTTTTT-CTGAGCATTACTTCCTTATATCTTATATATAGAGAGAAA 541
Query 537 GATTTAAGTCTTTTGAAAAGACAAATCTCAAAGTCTCTCCCTTTGTTCGTCTCTGTTCCC 596
|||| ||||||||||||||||||||||| |||||||||||||||||| | ||| |||||
Sbjct 542 GATTCAAGTCTTTTGAAAAGACAAATCTGAAAGTCTCTCCCTTTGTTATTGTCTCTTCCC 601
Query 597 ATATTTTGTTGTTTGAATGTGTTTTGGACAATTTCTTATCTATTGTGGTGTAACTGCATA 656
|||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 602 ATATTTTGCTGTTTGAATGTATTTTGGATAATTTCTTATCTATTGTGGTGTAACTGCATA 661
Query 657 TGAACAACAGTCTTGTTGGTGGTTTTGCCTTGA-GCAACTAATGA 700
| ||||||||||||||||||| ||||||||| | |||||||||||
Sbjct 662 TAAACAACAGTCTTGTTGGTGTTTTTGCCTT-ATGCAACTAATGA 705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33908049225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5